mRNA_H-paniculata_contig13817.2344.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13817.2344.1
Unique NamemRNA_H-paniculata_contig13817.2344.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: A0A6H5JI06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI06_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 1.080e-102
Identity = 194/298 (65.10%), Postives = 220/298 (73.83%), Query Frame = 1 
Query:    1 VTLSLLTRFGLPPSCQMVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSG------------------LWLVGGASNVGCAVLRMEGF---VSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGAVNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQGLLPS---MKVSVPASSRMGGNSADG 822
            V+ S+ +RF LPP+C +VAGTTDSIAAFIAA+AT PG+AVTSLGSTLAVKMLSERRVEDAS GVYSHRLG+  G+     G    + E     ++G    GS                   LWLVGGASNVGCAVLR+EGF   +S ELE  S DIDPS DSPL YY PL RGT GERFPTNDPLK S+L+PRPE+R E+LHGLLQAIARVE EGYA LEALGAT+L RVDTAGGGAVNPTW+ MRQR+LGVPTGKA NTDAAYGCALL MQGL  +   +  + P SS+   NSA+G
Sbjct:  361 VSASMASRFSLPPTCSVVAGTTDSIAAFIAADATTPGHAVTSLGSTLAVKMLSERRVEDASLGVYSHRLGNA-GKVR---GAATAKVEESNQNQQGRRERGSNGVDXXXXXXXXXXXXXXDLWLVGGASNVGCAVLRVEGFEASISSELEARSSDIDPSTDSPLKYY-PLQRGTVGERFPTNDPLKKSILEPRPENRTEYLHGLLQAIARVESEGYAALEALGATRLNRVDTAGGGAVNPTWMAMRQRMLGVPTGKATNTDAAYGCALLAMQGLRSTGAAVATTTPTSSQ---NSANG 650
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: D7FVM2_ECTSI (Carbohydrate kinase, FGGY n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM2_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.200e-93
Identity = 168/249 (67.47%), Postives = 188/249 (75.50%), Query Frame = 1 
Query:    1 VTLSLLTRFGLPPSCQMVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTW-------------GRTSEG---GGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCAVLRMEGFVSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGAVNPTWITMRQRLLGVPT 699
            V+ S+ +RF LPP+C +VAGTTDSIAAFIAA+AT PG+AVTSLGSTLAVKMLSERRVEDASRGVYSHRLG+                +  +G   GG D +  +               LWLVGGASNVGCAVLR+EGF S ELE  S DIDPS DSPL+YY PL RGT GERFPTNDPLK S+L+PRPE+R E+LHGLL AIARVE EGYA LEALGATKL RVDTAGGGAVNPTW+ MRQR+LGVPT
Sbjct:  219 VSASMASRFNLPPTCSVVAGTTDSIAAFIAADATTPGHAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGNAGRDRGPANAKVEEINQNQQGRREGGSDGVNADDAXXXXXXXXXXXXXLWLVGGASNVGCAVLRVEGFESSELEARSSDIDPSTDSPLEYY-PLQRGTVGERFPTNDPLKKSILEPRPENRTEYLHGLLHAIARVESEGYAALEALGATKLNRVDTAGGGAVNPTWMAMRQRMLGVPT 466
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: W7TDC3_9STRA (Carbohydrate fggy n=4 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDC3_9STRA)

HSP 1 Score: 235 bits (599), Expect = 1.030e-66
Identity = 135/254 (53.15%), Postives = 164/254 (64.57%), Query Frame = 1 
Query:    1 VTLSLLTRFGLPPSCQMVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCAVLRMEGFVSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGAVNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQGLL 762
            V+ SL+   G P  C +V GTTDS+AAFIAA   EPG AVTSLGSTLA+KMLS + VEDA+RGVYSHRLG+ W                                LVGGASNVGCAVLR EGF + ELE LS +IDP +      YYPL  G  GERFP+ DP K ++L PRP  R E+L G+L+ IARVE++GY  L+ LGA +L  V TAGGGA N  W  +R++LLGVPTGKA  T+A+YG ALL ++ +L
Sbjct:  275 VSPSLVQSHGFPSDCTVVGGTTDSVAAFIAAGLQEPGQAVTSLGSTLAIKMLSNKAVEDATRGVYSHRLGNQW--------------------------------LVGGASNVGCAVLRQEGFSNPELERLSQEIDPRRPCRHLNYYPL-AGDAGERFPSCDPSKKALLTPRPPRRSEYLQGILEGIARVERDGYQILKDLGADELVEVRTAGGGARNKVWTRIRRQLLGVPTGKASETEASYGAALLALKTVL 495
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: A0A0M0JGE8_9EUKA (Carbohydrate fggy n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JGE8_9EUKA)

HSP 1 Score: 225 bits (573), Expect = 1.440e-64
Identity = 130/245 (53.06%), Postives = 151/245 (61.63%), Query Frame = 1 
Query:   22 RFGLPPSCQMVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCAVLRMEGFVSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGAVNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQG 756
            R+GLP  C +V GTTDSIAAF+AA ATE G AVTSLGSTLA+K+LS    EDA RGVYSHRLGD                                LWLVGGASN GCAVLR + F +GELE LS  IDPS   P   YYPL   T GERFP  DP    VL P P +R + LH +L  +A VEK+GY  L  LGA+ L RV T+GGGA NP W  +RQ++L VPT +A N +AAYG A+L  +G
Sbjct:  140 RWGLPIECIVVGGTTDSIAAFLAAGATEVGDAVTSLGSTLAIKLLSSTFAEDARRGVYSHRLGD--------------------------------LWLVGGASNAGCAVLREQAFDAGELERLSSAIDPSVPPPYTDYYPLSSSTVGERFPRPDPNAVGVLSPVPPERRDFLHCILHGLAVVEKQGYDALAELGASPLRRVLTSGGGAQNPQWTRLRQKMLSVPTSRAANIEAAYGAAMLACRG 352
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: A0A836CG13_9STRA (Carbohydrate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG13_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.100e-63
Identity = 139/255 (54.51%), Postives = 158/255 (61.96%), Query Frame = 1 
Query:   22 RFGLPPSCQMVAGTTDSIAAFIAANATEP-----GYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCAVLRMEGFVSGELETLSLDIDPSKDSPL-DYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATK-LARVDTAGGGAVNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQGLLP 765
            R GLPP C++ AGTTDSIAAF+AA+ +       G+AVTSLGSTLA+K+LS  RVEDASRGVYSHRLGD                               G+WLVGGASN GCAV R  GF   EL  LS D+  S    L + YYPL  G +GERFP NDP   ++L+P P  RGE+L GLLQ++ARVE EGYA L  LGA   LA V TAGGGA N  W  MR R LGVP   ARN DAAYG ALLG+   LP
Sbjct:  227 RHGLPPRCEVAAGTTDSIAAFLAADGSSXXXXXAGHAVTSLGSTLALKLLSATRVEDASRGVYSHRLGD-------------------------------GMWLVGGASNTGCAVFRQLGFSDAELAELSADMSESTGEELGEVYYPL-AGQQGERFPFNDPDMKAILEPVPASRGEYLAGLLQSLARVEAEGYALLHELGALPALAAVATAGGGANNGAWSAMRARRLGVPVTAARNGDAAYGVALLGLAQPLP 449
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: A0A0A9HYZ4_ARUDO (FGGY_C domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9HYZ4_ARUDO)

HSP 1 Score: 219 bits (558), Expect = 1.030e-61
Identity = 129/245 (52.65%), Postives = 155/245 (63.27%), Query Frame = 1 
Query:   22 RFGLPPSCQMVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCAVLRMEGFVSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGAVNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQG 756
            ++G   +C +  GTTDSIAAF+AA  TEPG AVTSLGSTLA+K++S+ RV+DA  GVYSHRL DTW                                LVGGASN G AVLR   F   +L  LS DIDPS  SPLDYY PLP+  KGERFP +DP     L PRPE   E+LHG+L++IAR+E  GY  L+ LGAT +  V TAGGGA N  W  +R+R+LGVP  KAR T+AAYG ALL ++G
Sbjct:  197 QYGFSKNCVVCTGTTDSIAAFLAARTTEPGRAVTSLGSTLAIKLVSKIRVDDARFGVYSHRLDDTW--------------------------------LVGGASNSGGAVLRQH-FTDDQLVALSKDIDPSVPSPLDYY-PLPK--KGERFPVSDPNMMPRLQPRPESDAEYLHGILESIARIEANGYNLLKELGATAVEEVFTAGGGAQNEKWTAIRERVLGVPVRKARETEAAYGAALLALKG 405
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: A0A2T2S1C1_9CYAN (Carbohydrate kinase n=1 Tax=Cyanobacteria bacterium QS_8_64_29 TaxID=1919134 RepID=A0A2T2S1C1_9CYAN)

HSP 1 Score: 219 bits (558), Expect = 1.380e-61
Identity = 128/245 (52.24%), Postives = 154/245 (62.86%), Query Frame = 1 
Query:   22 RFGLPPSCQMVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCAVLRMEGFVSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGAVNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQG 756
            R G P +CQ+ AGTTDSIAAF+A+ A  PG  +TSLGSTLA+K+LSE+RVEDA  G+YSHRLGD                                LWL GGASNVG AVLR   F   EL   S  IDP+++SPLDYY   P  + GERFP NDP K+  L+P+P D    LHGLL+++AR+E  GY  L+ALGA+ LARV TAGGGA NP W  +RQR LGVP   +++  AAYG A L  QG
Sbjct:  204 RLGCPRACQVCAGTTDSIAAFLASGARLPGEGITSLGSTLALKLLSEQRVEDARYGIYSHRLGD--------------------------------LWLTGGASNVGGAVLRHY-FSDAELAQYSARIDPAQESPLDYY---PLLSPGERFPVNDPDKEPQLEPQPADPVAFLHGLLESLARIEASGYRKLQALGASPLARVYTAGGGAQNPQWRAIRQRQLGVPVAPSQHAQAAYGAARLAQQG 412
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: A0A3L6QSR0_PANMI (Gluconokinase isoform X3 n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6QSR0_PANMI)

HSP 1 Score: 217 bits (552), Expect = 1.670e-61
Identity = 129/245 (52.65%), Postives = 152/245 (62.04%), Query Frame = 1 
Query:   22 RFGLPPSCQMVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCAVLRMEGFVSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGAVNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQG 756
            ++GL   C +  GTTDSIAAF+AA    PG AVTSLGSTLAVK++SE RV+DA  GVYSHRL D W                                LVGGASN G AVLR   F   +L  LS DIDP+  SPLDYY PLPR  KGERFP +DP     L PRPE   E+LHG+L++IAR+E  GY+ L  LGAT +  V TAGGGA N  W T+R+R+LGVP  KA  T+AAYG ALL ++G
Sbjct:  135 QYGLSKECVVCTGTTDSIAAFLAARTAGPGRAVTSLGSTLAVKLVSEARVDDARFGVYSHRLDDAW--------------------------------LVGGASNTGGAVLRQL-FTDDQLVALSRDIDPAAASPLDYY-PLPR--KGERFPVSDPDMAPRLQPRPESDAEYLHGILESIARIEARGYSLLRELGATAVEEVFTAGGGAQNEKWTTIRERVLGVPVRKAEQTEAAYGAALLALKG 343
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: UPI00168497F4 (FGGY-family carbohydrate kinase n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI00168497F4)

HSP 1 Score: 219 bits (557), Expect = 1.980e-61
Identity = 128/253 (50.59%), Postives = 158/253 (62.45%), Query Frame = 1 
Query:    1 VTLSLLTRFGLPPSCQMVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCAVLRMEGFVSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGAVNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQGL 759
            +T  +  +FGLP  CQ+ AGTTDSIAAF+A+    PG AVTSLGSTL +K+LS  R++DA  G+YSHRL D                                LWLVGGASN G AVLR + F   ELE+LS  IDP ++SPLDYY PL +   G+RFP NDP     L+PRP++  E LHGLL++IAR+E + Y  L+ LG TKL  V TAGGGA NP W  +R+RLL VP G   +T+AAYG ALL M+ L
Sbjct:  203 ITAEIAQQFGLPADCQVCAGTTDSIAAFLASGVQSPGEAVTSLGSTLVLKLLSRTRIDDARYGIYSHRLED--------------------------------LWLVGGASNTGGAVLR-QFFTDTELESLSRQIDPEQESPLDYY-PLIKA--GDRFPINDPNLPPRLEPRPDNPVEFLHGLLESIARIEAQAYQLLQELGTTKLTHVYTAGGGAKNPVWSAIRERLLNVPVGVPAHTEAAYGTALLAMRQL 419
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BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Match: A0A2A2TKH6_9CYAN (Carbohydrate kinase n=1 Tax=Calothrix elsteri CCALA 953 TaxID=987040 RepID=A0A2A2TKH6_9CYAN)

HSP 1 Score: 219 bits (557), Expect = 2.370e-61
Identity = 135/252 (53.57%), Postives = 160/252 (63.49%), Query Frame = 1 
Query:    1 VTLSLLTRFGLPPSCQMVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYSHRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCAVLRMEGFVSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKDSVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGAVNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQG 756
            +T  + TRF  P  C + AGTTDSIAAF+A+ A  PG AVTSLGSTLAVK+LS   VED+  G+YSHR  +    T+                K+ +D     LWLVGGASN G AVLR   F + ELE+LS +IDP K S LDYY PL +   GERFP ND      L+PRPE+  E LHGLL++IAR+E  GY  L+ LGA KL  V TAGGGA NPTW  +RQR L VP   + NT+AAYG ALL MQG
Sbjct:  201 ITEEIATRFNFPSDCLICAGTTDSIAAFLASGAKTPGEAVTSLGSTLAVKLLSRTYVEDSRYGIYSHRFPNFGQETN----------------KQEKD-----LWLVGGASNTGGAVLR-HFFSNAELESLSREIDPGKISELDYY-PLLKA--GERFPINDANLQPQLEPRPENNAEFLHGLLESIARIEARGYELLQELGADKLNWVYTAGGGAANPTWTAIRQRYLKVPVKSSVNTEAAYGSALLAMQG 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13817.2344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI06_9PHAE1.080e-10265.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM2_ECTSI1.200e-9367.47Carbohydrate kinase, FGGY n=1 Tax=Ectocarpus silic... [more]
W7TDC3_9STRA1.030e-6653.15Carbohydrate fggy n=4 Tax=Nannochloropsis gaditana... [more]
A0A0M0JGE8_9EUKA1.440e-6453.06Carbohydrate fggy n=1 Tax=Chrysochromulina tobinii... [more]
A0A836CG13_9STRA1.100e-6354.51Carbohydrate kinase n=1 Tax=Tribonema minus TaxID=... [more]
A0A0A9HYZ4_ARUDO1.030e-6152.65FGGY_C domain-containing protein n=1 Tax=Arundo do... [more]
A0A2T2S1C1_9CYAN1.380e-6152.24Carbohydrate kinase n=1 Tax=Cyanobacteria bacteriu... [more]
A0A3L6QSR0_PANMI1.670e-6152.65Gluconokinase isoform X3 n=1 Tax=Panicum miliaceum... [more]
UPI00168497F41.980e-6150.59FGGY-family carbohydrate kinase n=2 Tax=unclassifi... [more]
A0A2A2TKH6_9CYAN2.370e-6153.57Carbohydrate kinase n=1 Tax=Calothrix elsteri CCAL... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13817contigH-paniculata_contig13817:321..5942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.8
Seed ortholog evalue6.9e-76
Seed eggNOG ortholog2880.D7FVM2
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019150,GO:0019200,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046835,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.FGGY family of carbohydrate kinases, C-terminal domain
EggNOG OGs2QVMB@2759,COG1070@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1812
Cds size858
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929098.482026-UTR-H-paniculata_contig13817:320..3681622929098.482026-UTR-H-paniculata_contig13817:320..368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13817 321..368 +
1691480730.7301917-UTR-H-paniculata_contig13817:320..3681691480730.7301917-UTR-H-paniculata_contig13817:320..368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13817 321..368 +
1622929098.578351-UTR-H-paniculata_contig13817:5036..59421622929098.578351-UTR-H-paniculata_contig13817:5036..5942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13817 5037..5942 +
1691480730.789195-UTR-H-paniculata_contig13817:5036..59421691480730.789195-UTR-H-paniculata_contig13817:5036..5942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13817 5037..5942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929098.5007145-CDS-H-paniculata_contig13817:368..4821622929098.5007145-CDS-H-paniculata_contig13817:368..482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 369..482 +
1691480730.7401474-CDS-H-paniculata_contig13817:368..4821691480730.7401474-CDS-H-paniculata_contig13817:368..482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 369..482 +
1622929098.5182009-CDS-H-paniculata_contig13817:1601..18111622929098.5182009-CDS-H-paniculata_contig13817:1601..1811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 1602..1811 +
1691480730.7520168-CDS-H-paniculata_contig13817:1601..18111691480730.7520168-CDS-H-paniculata_contig13817:1601..1811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 1602..1811 +
1622929098.540745-CDS-H-paniculata_contig13817:2211..24051622929098.540745-CDS-H-paniculata_contig13817:2211..2405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 2212..2405 +
1691480730.7622898-CDS-H-paniculata_contig13817:2211..24051691480730.7622898-CDS-H-paniculata_contig13817:2211..2405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 2212..2405 +
1622929098.552622-CDS-H-paniculata_contig13817:3203..33371622929098.552622-CDS-H-paniculata_contig13817:3203..3337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 3204..3337 +
1691480730.7709227-CDS-H-paniculata_contig13817:3203..33371691480730.7709227-CDS-H-paniculata_contig13817:3203..3337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 3204..3337 +
1622929098.56357-CDS-H-paniculata_contig13817:4830..50361622929098.56357-CDS-H-paniculata_contig13817:4830..5036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 4831..5036 +
1691480730.7799346-CDS-H-paniculata_contig13817:4830..50361691480730.7799346-CDS-H-paniculata_contig13817:4830..5036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13817 4831..5036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13817.2344.1prot_H-paniculata_contig13817.2344.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13817 369..5036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13817.2344.1

>prot_H-paniculata_contig13817.2344.1 ID=prot_H-paniculata_contig13817.2344.1|Name=mRNA_H-paniculata_contig13817.2344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=286bp
MVAGTTDSIAAFIAANATEPGYAVTSLGSTLAVKMLSERRVEDASRGVYS
HRLGDTWGRTSEGGGEDAIRGEPQVDAKEGEDSTGSGLWLVGGASNVGCA
VLRMEGFVSGELETLSLDIDPSKDSPLDYYYPLPRGTKGERFPTNDPLKD
SVLDPRPEDRGEHLHGLLQAIARVEKEGYATLEALGATKLARVDTAGGGA
VNPTWITMRQRLLGVPTGKARNTDAAYGCALLGMQGLLPSMKVSVPASSR
MGGNSADGGTVPPPPPPTSSSKVSVEQEALRSRRN*
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mRNA from alignment at H-paniculata_contig13817:321..5942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13817.2344.1 ID=mRNA_H-paniculata_contig13817.2344.1|Name=mRNA_H-paniculata_contig13817.2344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5622bp|location=Sequence derived from alignment at H-paniculata_contig13817:321..5942+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACGCTCTCGTTGCTGACAAGGTTTGGGTTGCCGCCTTCGTGTCAAAT
GGTGGCCGGAACGACGGACAGCATCGCGGCGTTTATCGCTGCGAATGCGA
CGGAGCCGGGGTATGCCGTGACCAGCTTGGGCAGCACTCTTGCCGTGAAG
ATGCTCAGTGAGGTGGGACAAGCGACATACGTATTGTCTGCCGGTAGCTG
TTGCCGGTACTGTTGATTGCTTTACTGCAGCTGTAGATACATGGGGGGAG
TGCTCTAGTTGTTAGGCCATTGAGGACTAAGCTGTTTACTGGAGATATCG
GGGGGGGTGCGGGGGTGCGGTTAATTAGCAAAAATATGTAGGGAGTATAC
GTAAACGGAGTGCAACGTAATATGTCATGAAACGAAGACAGGTAGAAGAA
CGTGAAACGCGATATATATATCTGCAATATTTGAACGGCATGTCGACGCC
GAAAACAATACTGTGCTGCGGAGTTCATCTAGCTCTGTCATGCTGCAGTA
ATATTTTTTACGTTGTCTTTTCTCGGCGTATTTCCGCCATTTTTATGTTC
ATACATAATATAGAAATAAGTAGCAGTAGAGTCACGGCTACGCCCGTACA
GTTCGTGCTTATTCTCGACCCACAGGCTCCCTGCGCTCGCGTAAAGATTC
GTTTTCCAGGAGCTACTTGAATACAAAATCGAAACTATGTTCCGGATGAC
CCACCACCTTCAGCACCACCACGACCACCACCAGTACTCTACGGTATTAA
AAAGAAGGACGTTGGTAGAATAACCAATATGTGACGCTTTGGGTACCTGT
AGTTTCCGCTTTTTTTTTTGCTTTTTTTTTGAGAGAGAGGCTGTGATGGG
TGTGCCGTCAGCGAAACCACTGCGCGGTGAGCGGGATGCGAGGTAAATGG
GCTTAACTGACTGTGCTCAAATCGTGACATGAGAAAGGCATGGGAAGTCG
TTCTCCACAGACAGTGCACAAGCTTGAGGCGGTATATTTTAAACGTCTTG
GGTTGCATCCCGAAGACTTGTCTGCATTTGTGTGGACTTTGCTGCCTTAC
ATCGTTGTTGTCTTTGTTGTTGTTGTAGTAGTACAGCGACTACTCTAAAG
AGTTCTATGGATATGACTTATGATGCAGTAGAATGATACTGTCTCCGATC
GAGGAAAACACTCACAACCCCCTACCCACTGTGTTTGTCTGTCTGTCTGT
CTGTCTATCTGTCTGTCTCATCTCTCTCTCCTCTCCCCCCTCTCTCTCTC
TCAACACAAAAACATCGCGTCACGCTCGCAGCGTCGAGTCGAAGACGCAT
CCCGTGGGGTCTACAGCCACCGCTTGGGAGACACGTGGGGCAGAACAAGC
GAGGGTGGCGGTGAAGACGCCATTCGCGGGGAACCGCAGGTCGACGCAAA
GGAGGGGGAGGACTCTACCGGCTCGGGACTATGGTTGGTGGGCGGGGCGT
CGAACGTCGGTTGCGCGGTGCTTCGAATGGAGGGGTTTGTGGTGAGTTTT
GTTGAAGCCTGGGCGAGAGGGGGGCAGGAAACGCGGGGCCGGGGGTCGGG
GCCGGGGGCGCGGGGCGGGGTGGCAGATGGGAGAGCGGAAATTTAGGGTC
TTTTTCGAACGATCGGCTTGCTGCTTCTGTGCATATATGTAGAGCTCCAC
GTATATCTGTACAAGCAAGACAAACTATTTTCTCGTTCAAATTGACCCAA
TGTGCGTAGACTTGTTTAAGACAGAGGGGGGAAGTACGTAGATCCTCCAT
ACCCTCCATACCCTCCATACCCCCCCCTCCCGTTTTGAGATTCTGTTCGG
CGTTACGCTTGTGTGTGTGTGTGTATGTGTATGTGTGTGTATGTGTATGT
GTGTGTGTGTATGTGTGTGTGTTTTCTGTGCAATGAGGCAGTCAGGGGAG
CTAGAGACGCTGAGCTTGGACATTGACCCCTCGAAGGATTCCCCTCTTGA
TTACTATTACCCGCTGCCGAGGGGCACGAAAGGGGAGCGATTTCCCACGA
ACGACCCCCTCAAGGACTCTGTCTTGGATCCCCGTCCGGAAGACCGAGGG
GAGCATCTGCACGGACTGCTGCAGGCGATCGCGAGGTACCAGGGGAAGGA
TTTTTTGTATCTTCGATTGGCCGGGAGGTCCCGAGGACTTTTTTGCTAGT
GTAGTGTAGTGTAGTGTAGTGGATGTAATGTACGTACTGTAGGCCTCTGC
TGTGATATATATATATATATATATATATATTGAAATGAAACGTACCTGGC
AAGAAATACGAAGAACCCTGGGCAAAAGTTAGACTTATGCCTAATAGTGC
AGCATTGCAAAGAGCTATAACATAAAAATATGGGCATTATTATTCTTTTT
TCCCAGACCAGAGTATGGTGTGAGGACGTGCTGGATACTTTTCAAACTAG
TTTATATCTTGCTTTCTGCTTATTTAGACGGGGAGCTGTCGAAGCCCTCA
TGCATAGGAATCGCGGGTCGACCGCTCACGGTTAGGTTGTATGGGTTGGT
TGCACTAGTGTTGTCACTCGTCGGGGGGGAAGGAGGTATCATGGCGAAAG
CATAAAGATATTTGATTTTGTCATGCTGTGCGGGACATGTGACCGGCGAC
AGTTACCTTCCCAGCGCCTCGCGATGTGTCGTTTTTCTCTGGGCGCGTGG
CCGTAGCATGTGCTCCCAATTGGGTGCTGGTGATAATAGTACTTGTCACT
TATCTATGGTGTGCCCGTCGTTATAAAGCTTCCTCCATGTTTTCATTCAA
CGGGTGCGGATCGTGTGTCTCCGCGCTCTTTTTTTTTTTTTTTTACCCCC
GGAAGGCTGAGGTAAAAACCTTTACCGATGCTTCCATACTTAAGTATGTC
TCCGCGCTCTTGTCTTGTTTTTTGTCGAGACAGGGTAGAGAAGGAGGGGT
ATGCCACGCTGGAAGCGTTGGGAGCGACGAAGCTGGCTAGGGTCGATACG
GCGGGGGGGGGCGCCGTTAATCCCACCTGGATTACGATGCGGCAGAGATT
GCTGGGGGTTCCCACAGGTGAGCGTAGTGTACCTACATATGTACGATCCA
TCCGTGTGTTTAGGTCCTGTTCTCGCCAACGAGTGCAGGATCTATTTCAC
AGCTAGGACAAAGGTTTGATTTTCAAGTAATGAACACGCAACGAAACCTT
CATCCCTTTATGCTCAAAAGTAGAAATAACTGTGGAGGTGCGCTAGTTCT
CAAAAGTCGAACACTCCTCGAAGGTGTGCAGGATATCCATGCTATCGATT
TGTGGGTTTCGGAAGGCACCAGGTACCCTCGTGCTGGTATTGTTCCAAAA
CCCGCGACATCCTTCATCGACGGATGAAGGACCTTCGTCCGAGCTGTGAT
CTATTTATCGATCTTTCGATCTATCGATCTATCGATCGATGTATGAGATA
TACTGACGGCAGATTATTTCGTTTTGGATGCCACTTTTTTTTTGCCCTTT
GCCTCGTTCCGGTCGGTGCCCCTATTGAATGTTTATTGGTGGTGGTCGAT
ACTTGTAGCTCACTTCCATTACACGGCAGCTTTGATATACCTATACAAGT
TACTACACAACCTCACAGCGTGATACGAGCGCGCTTATCTGTAACCGTAA
AAACAAAATCAAAATCAATCACGAGACGGGCGGAGTGTACTTATAGGGGT
TTCATCATGTTCGCAATTTAATTGGTTTGTTGTAAAGTTGCTCATGATAT
ATATATATATATATATATATATATTAGTAATAAATAGTATGTAGCCATCC
ATCACTAGCGGGCAAAATACCCTCAGGATGAGATCAACTCTACTGAAAGA
AAAACTCTACCGGTACATAATGTAACAGATGCGAGGATCACGAAACGAGG
GTTGACAGACCTGTTTGATGAAAGTTTGGAAGTTGAGTCTGTATTTTTGT
CAGTGTTCATGTCAAAACTATGCCCTTCCTGTTTTTTTCCATCAGTTGGA
GATACGTAATCAAGCAGCTTGTAAATACCCTTTACTGACTTGAATTTTAA
TGATAAATAATATGAAAATTTAAGTCAGCTAGATGACCTTGACATGAGTA
CAATGGAGTTCGTTAGATCCTCCCCGCCCCTCCCAATTTGTGTTCTCTAG
ACTTAACATCACTATTTTGTTTACCTTCCGACAATGTACAGACTCGGATG
TGGCTGTTGGCAAGTAGTAAAAGGCAATCAATCGTAAACTAGAACGAAGA
ATCATGGAAAATCTATCTAACAGACTGCACAGTTATCATAATTTACCAAT
ATTTCTTCTTTGGAGTTCCCTCGGAAACCTATCAAACAGACGATGCGTGC
TACTGCATGATTATGTCAGTCACACGCGTCGTGTCCTGCACCCCATCTTT
CCCTCTGCCTCTCCCCCTCCCCCGGCGCGCTGCATCCCTGCTTGTCTTGC
TGTGTATATTATACATATATACGTGCAAACATTTTGCGCGGGTGGTTGCT
TACCCTGACCCGATCGTACCGTGCTCGGGATGGCTGCGGCTGTGGGGGGG
TTAAAAGCAGGGAAGGCACGAAATACCGACGCGGCCTATGGGTGCGCCTT
GCTGGGCATGCAAGGCTTGCTACCTTCCATGAAGGTTTCCGTTCCCGCTT
CTAGTCGTATGGGAGGCAATTCGGCTGACGGCGGTACTGTGCCGCCGCCT
CCGCCCCCTACTTCATCTTCAAAGGTTTCCGTCGAACAAGAGGCATTACG
ATCTAGACGGAATTAGAGAGTACACGAGCGGGGTTGGGTGCATGGTGTGA
TACGTCGTTCAGCAGCAGCGTTCGTTTAGTAGAAGGACTTTTCGGTAGGG
AAGAATGGAAGGAGCACGGTGCGGTGCGCACCGTACCATGTATAGCACCA
TGTATTATTCACTTGGTGCTTGAAAATACATGGTGTGTGTTTTTTTTGCA
AGTCTTAAAATGAAAAAGGAAACGATGTTGTTTCGGCAGCCCCCTCTCGG
TCTCCACCCTCCGTCTCCAGCATTCCGTCACTCGACTCTCGGCTCATTTG
TGGTGTGATAAGTAGTAGAGGTGGCGATAAGTAGAGCACCAGCATTGGTT
ACAGGAGTTGTATTATTATACCTGTGGGTATCATCGAGTGAACGTGTACA
CATGAGCTTCCCCGTGTTTCCCGTCTTGTTTTTTTTGTATAATATCTTGG
GTTTCGTTTGTTGGCTTTGACCTGGTATTTAGGCTCTGGGTACCGATTAA
TCAGATACACCACAGCGATTTGTTTGTCCTGTGGCAGCGCGGGCGGGTGT
TATTGAATGCCGCTGCTGGGGGATAGGGTGTGTTTGTTTGTTGGTACGCC
ATGTGTATGTCATTGGAGTACGTGAAGGGGGGGAAAACATGTTATTGGTG
AAATGAAGAACGATTGTTGTTGGAGAATGAGCTCTATATATATATTGTTT
TGTCCATGCCACCGATTTTTCCGCCTGAAGTAGTTTCCGACCAACGCGGC
CGATTCAGTGAGTTGATCGTTTAATCAAAAGCTCTCAATCACCCGATAAC
GTCAATACCTCCACTGGCTGAATCCGATCCATCCTTCGGAATTTATGGCA
GTGACAAAAATGGGCGGAAAATCGATTAATAATCCATTTGACGCGGATTT
TTTCAATCTGTGCTGTTGCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig13817:321..5942+

>mRNA_H-paniculata_contig13817.2344.1 ID=mRNA_H-paniculata_contig13817.2344.1|Name=mRNA_H-paniculata_contig13817.2344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1716bp|location=Sequence derived from alignment at H-paniculata_contig13817:321..5942+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCCGGAACGACGGACAGCATCGCGGCGTTTATCGCTGCGAATGC
GACGGAGCCGGGGTATGCCGTGACCAGCTTGGGCAGCACTCTTGCCGTGA
AGATGCTCAGTGAGATGGTGGCCGGAACGACGGACAGCATCGCGGCGTTT
ATCGCTGCGAATGCGACGGAGCCGGGGTATGCCGTGACCAGCTTGGGCAG
CACTCTTGCCGTGAAGATGCTCAGTGAGCGTCGAGTCGAAGACGCATCCC
GTGGGGTCTACAGCCACCGCTTGGGAGACACGTGGGGCAGAACAAGCGAG
GGTGGCGGTGAAGACGCCATTCGCGGGGAACCGCAGGTCGACGCAAAGGA
GGGGGAGGACTCTACCGGCTCGGGACTATGGTTGGTGGGCGGGGCGTCGA
ACGTCGGTTGCGCGGTGCTTCGAATGGAGGGGTTTGTGCGTCGAGTCGAA
GACGCATCCCGTGGGGTCTACAGCCACCGCTTGGGAGACACGTGGGGCAG
AACAAGCGAGGGTGGCGGTGAAGACGCCATTCGCGGGGAACCGCAGGTCG
ACGCAAAGGAGGGGGAGGACTCTACCGGCTCGGGACTATGGTTGGTGGGC
GGGGCGTCGAACGTCGGTTGCGCGGTGCTTCGAATGGAGGGGTTTGTGTC
AGGGGAGCTAGAGACGCTGAGCTTGGACATTGACCCCTCGAAGGATTCCC
CTCTTGATTACTATTACCCGCTGCCGAGGGGCACGAAAGGGGAGCGATTT
CCCACGAACGACCCCCTCAAGGACTCTGTCTTGGATCCCCGTCCGGAAGA
CCGAGGGGAGCATCTGCACGGACTGCTGCAGGCGATCGCGAGTCAGGGGA
GCTAGAGACGCTGAGCTTGGACATTGACCCCTCGAAGGATTCCCCTCTTG
ATTACTATTACCCGCTGCCGAGGGGCACGAAAGGGGAGCGATTTCCCACG
AACGACCCCCTCAAGGACTCTGTCTTGGATCCCCGTCCGGAAGACCGAGG
GGAGCATCTGCACGGACTGCTGCAGGCGATCGCGAGGGTAGAGAAGGAGG
GGTATGCCACGCTGGAAGCGTTGGGAGCGACGAAGCTGGCTAGGGTCGAT
ACGGCGGGGGGGGGCGCCGTTAATCCCACCTGGATTACGATGCGGCAGAG
ATTGCTGGGGGTTCCCACAGGGTAGAGAAGGAGGGGTATGCCACGCTGGA
AGCGTTGGGAGCGACGAAGCTGGCTAGGGTCGATACGGCGGGGGGGGGCG
CCGTTAATCCCACCTGGATTACGATGCGGCAGAGATTGCTGGGGGTTCCC
ACAGGGAAGGCACGAAATACCGACGCGGCCTATGGGTGCGCCTTGCTGGG
CATGCAAGGCTTGCTACCTTCCATGAAGGTTTCCGTTCCCGCTTCTAGTC
GTATGGGAGGCAATTCGGCTGACGGCGGTACTGTGCCGCCGCCTCCGCCC
CCTACTTCATCTTCAAAGGTTTCCGTCGAACAAGAGGCATTACGATCTAG
ACGGAATTAGGGAAGGCACGAAATACCGACGCGGCCTATGGGTGCGCCTT
GCTGGGCATGCAAGGCTTGCTACCTTCCATGAAGGTTTCCGTTCCCGCTT
CTAGTCGTATGGGAGGCAATTCGGCTGACGGCGGTACTGTGCCGCCGCCT
CCGCCCCCTACTTCATCTTCAAAGGTTTCCGTCGAACAAGAGGCATTACG
ATCTAGACGGAATTAG
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