mRNA_H-paniculata_contig13785.2328.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13785.2328.1
Unique NamemRNA_H-paniculata_contig13785.2328.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13785.2328.1 vs. uniprot
Match: A0A6H5L6J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J3_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.530e-5
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   73 AFSYPTPGSDS--FRRLNLSPAGVSKSDLRRSVSSEDLLAGLTIR 201
            A+++P+P +D    RRL+LSPA   K DLRRSVSSEDLLAGL IR
Sbjct:  311 AYNFPSPSADRDILRRLSLSPASA-KRDLRRSVSSEDLLAGLRIR 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13785.2328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6J3_9PHAE1.530e-564.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13785contigH-paniculata_contig13785:3833..4352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size201
Cds size174
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13785.2328.1prot_H-paniculata_contig13785.2328.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13785 3833..4325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929095.8940184-CDS-H-paniculata_contig13785:3832..39291622929095.8940184-CDS-H-paniculata_contig13785:3832..3929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13785 3833..3929 -
1691480729.563571-CDS-H-paniculata_contig13785:3832..39291691480729.563571-CDS-H-paniculata_contig13785:3832..3929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13785 3833..3929 -
1622929095.9087517-CDS-H-paniculata_contig13785:4248..43251622929095.9087517-CDS-H-paniculata_contig13785:4248..4325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13785 4249..4325 -
1691480729.572518-CDS-H-paniculata_contig13785:4248..43251691480729.572518-CDS-H-paniculata_contig13785:4248..4325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13785 4249..4325 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929095.9227777-UTR-H-paniculata_contig13785:4325..43521622929095.9227777-UTR-H-paniculata_contig13785:4325..4352Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13785 4326..4352 -
1691480729.5834334-UTR-H-paniculata_contig13785:4325..43521691480729.5834334-UTR-H-paniculata_contig13785:4325..4352Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13785 4326..4352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13785.2328.1

>prot_H-paniculata_contig13785.2328.1 ID=prot_H-paniculata_contig13785.2328.1|Name=mRNA_H-paniculata_contig13785.2328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MRLVRDSTEGTTPLTAFSYPTPGSDSFRRLNLSPAGVSKSDLRRSVSSED
LLAGLTIR
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mRNA from alignment at H-paniculata_contig13785:3833..4352-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13785.2328.1 ID=mRNA_H-paniculata_contig13785.2328.1|Name=mRNA_H-paniculata_contig13785.2328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=520bp|location=Sequence derived from alignment at H-paniculata_contig13785:3833..4352- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGCGCTAATGGTTTGCTGAGCTGTATGAGGCTGGTGCGCGATAGCAC
CGAAGGGACGACCCCTTTAACCGCGTTTAGTTACCCTACCCCTGGGTCGG
ACAGGTGGGTGCCTTTTTTTTCTTGGCCGGGGGCGGGGGGGTACAGCGTT
TAGGGAGCTGCTACATACCCTTGGAACGAACAATTAAGCTGCTAGAATCA
ATTCAATTTAACAATACTTTTGTGGACGTACGTAGTAAGGGGGGGTTGGT
TTTGTGCAAAAAGATACAAGGACATTTCTCGAGGCCAGCTCAATACCTAT
ATACGTACGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTTTTGCATGTT
GGCGTTGTATTTTGGGGACGGGTTTTGGTTGGCGCTCGCTGTGCGTGGAT
GGATGGATGGATGGATGCGGTAGCTTTCGAAGATTGAATCTGTCTCCTGC
GGGAGTTTCGAAGTCGGACCTGCGACGGAGCGTGTCTAGCGAGGATCTAC
TGGCCGGACTCACGATCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13785:3833..4352-

>mRNA_H-paniculata_contig13785.2328.1 ID=mRNA_H-paniculata_contig13785.2328.1|Name=mRNA_H-paniculata_contig13785.2328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig13785:3833..4352- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCTGGTGCGCGATAGCACCGAAGGGACGACCCCTTTAACCGCGTT
TAGTTACCCTACCCCTGGGTCGGACAGATGAGGCTGGTGCGCGATAGCAC
CGAAGGGACGACCCCTTTAACCGCGTTTAGTTACCCTACCCCTGGGTCGG
ACAGCTTTCGAAGATTGAATCTGTCTCCTGCGGGAGTTTCGAAGTCGGAC
CTGCGACGGAGCGTGTCTAGCGAGGATCTACTGGCCGGACTCACGATCAG
GCTTTCGAAGATTGAATCTGTCTCCTGCGGGAGTTTCGAAGTCGGACCTG
CGACGGAGCGTGTCTAGCGAGGATCTACTGGCCGGACTCACGATCAGG
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