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Homology
BLAST of mRNA_H-paniculata_contig13778.2323.1 vs. uniprot
Match: D7FQK1_ECTSI (BRISC and BRCA1-A complex member 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK1_ECTSI) HSP 1 Score: 314 bits (804), Expect = 6.240e-103 Identity = 160/287 (55.75%), Postives = 198/287 (68.99%), Query Frame = 1
Query: 4 GLEEQIKG-FTQSEDIVVSIFVPYCEAGSEWEVVVDAESPNRCPDLVPVPSNEADAGKGFVPGMMETYDVFRIEFLPSLESWDLLRRPDSLAALALDLKRLRREYEVGRLHLSPLKSA-SFHFEAVKDRLEEVEVLVSRAVVRIVFPLWKEQGGEA---------DDGDESNDPDSSTAEA-GPVFVYGRLGIRLRLEWTQMGEGGEKPDVRVLFPPEAQGLARGFRHPPWTSGMTLYDYLPLTQAAVAEPWRQRKQLVATLGARYSVLEYDAQDFTFIHLFLKVCV 828
L+E + G F QSEDIVVS+F+PYCE+G+EWEVV+D ++P RCPDLVP PS E D +GF GM E Y+ +R+ L SL+ WDL RRP SLAALALD+K+LRR +E+ +L SPL SA SFH ++DR E++E+LVSRA R+ FPLW + A AE GP+FVYGR G+R+R+EWTQ+ +G PDVRVLFP EAQGL GFR P W+S TL DYLP QAAV PW +RK LVA L R++VLEYDAQDFT +HLF+KV V
Sbjct: 34 SLQEPVTGGFAQSEDIVVSVFIPYCESGAEWEVVIDGDAPERCPDLVPFPSTEGDVNRGFTQGMHEAYNTYRLASLESLKKWDLFRRPSSLAALALDIKQLRRNHEIQKLENSPLASAMSFHLGYLRDRQEDIELLVSRAGARLAFPLWPDPTAAAAXXXXXXXXXXXXXXXXXXXXDAEGEGPMFVYGRAGVRVRMEWTQV-DGNRPPDVRVLFPQEAQGLTMGFRQPSWSSETTLGDYLPRAQAAVVTPWSERKNLVAMLAKRHNVLEYDAQDFTMLHLFMKVKV 319
BLAST of mRNA_H-paniculata_contig13778.2323.1 vs. uniprot
Match: A0A7S3YK41_HETAK (BRISC and BRCA1-A complex member 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK41_HETAK) HSP 1 Score: 119 bits (299), Expect = 6.180e-28 Identity = 81/250 (32.40%), Postives = 126/250 (50.40%), Query Frame = 1
Query: 88 EWEVVVDAESPNRCPDLVPVPSNEADAGKGFVPGMMETYDVFRIEFLPSLESWDLLRRPDSLAALALDLKRLRREYEVGRLHLSPLKSASFHFEAVKDRLEEVEVLVS--RAVVRIVFPLWKEQGGEADDGDESNDPDSSTAEAGPVFVYGRLGIRLRLEWT--QMGEGGEKPD-VRVLFPPEAQGLARGFRHPPWTSGMTLYDYLPLTQAAVAEPWRQRKQLVATLGARYSVLEYDAQDFTFIHLFLKV 822
+W +VVD++S PDL+P VPG+ + Y VF + + SLESWD L D L LA+D++ R ++V ++ + +A++ R + V+VLV VR+ FPLW DE+ + +A P F+ I L L + + G PD V V FP + GF PPW +G +++DYLPL + A W R+++V L R + LE+DA D++ IH+ ++V
Sbjct: 2 QWVLVVDSKS-TLPPDLIPQQ----------VPGVDDIYQVFDLGEIESLESWDSLGE-DGLYLLAMDIRNCYRRHQVKKVREMGFQEVENTLDALQHREQSVDVLVDPMEGTVRLRFPLW----------DETTEAKEDLNKA-PSFMVDGCAICLDLTYRIESLTAGRSTPDHVEVSFPHRMKTTKNGFILPPWQAGTSMFDYLPLVRRQAARRWAFRREVVRVLAKRCASLEFDAVDYSSIHILVQV 228
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-01_008980.1 |
| Exons | 5 |
| Model size | 830 |
| Cds size | 828 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13778.2323.1 >prot_H-paniculata_contig13778.2323.1 ID=prot_H-paniculata_contig13778.2323.1|Name=mRNA_H-paniculata_contig13778.2323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
VGLEEQIKGFTQSEDIVVSIFVPYCEAGSEWEVVVDAESPNRCPDLVPVP
SNEADAGKGFVPGMMETYDVFRIEFLPSLESWDLLRRPDSLAALALDLKR
LRREYEVGRLHLSPLKSASFHFEAVKDRLEEVEVLVSRAVVRIVFPLWKE
QGGEADDGDESNDPDSSTAEAGPVFVYGRLGIRLRLEWTQMGEGGEKPDV
RVLFPPEAQGLARGFRHPPWTSGMTLYDYLPLTQAAVAEPWRQRKQLVAT
LGARYSVLEYDAQDFTFIHLFLKVCV back to topmRNA from alignment at H-paniculata_contig13778:2165..6871+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig13778.2323.1 ID=mRNA_H-paniculata_contig13778.2323.1|Name=mRNA_H-paniculata_contig13778.2323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4707bp|location=Sequence derived from alignment at H-paniculata_contig13778:2165..6871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGCCTCGAGGAGCAGATAAAGGGCTTTACCCAGAGCGAAGACATCGT
GGTGAGCATTTTCGTGCCCTACTGCGAGGCCGGGTCAGAGTGGGAGGTGG
TCGTAGACGCGGAATCGCCGAACCGATGCCCGGACCTGGTGCCGGTGCCG
TCCAACGAAGCAGATGCTGGCAAGGTGAGTGAGGGGGTGAAAAAATGATT
GAGAGAGTAAGTGAGAGAGGGAAGGAGGGAGAGAGAGAGAGAGGGAGAGA
GGGAGAGAGGGAGGGAGAGAGAGAGGGAGGGAGGGAGGGAGAGAGAGAGA
GAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGAGAGAGAGGGAGGGAAGGA
GTGTGCAAAAAATGCGCAGAGAAAAGGAGGAGAAAAAACGGTTAGCCCTT
TTGTGTGCCTTGGGTCGATTCCTATGGGCGTTCGAAACTTGCGCTTGAAA
ATTAATCTTTTGAAAAATCGAACGAGTCCCAGGTCGAGCCCCAGCCTATA
CGGTTTTTGCCAAGAATCGACTGCAGGTTTCGGAACCGTTTGATAGTGGT
ATTCAGCTGTGCCGTGTTCACGATATTTATTTAAGAAACGTTTTCCATGA
CTGTATAACACGTACTTTCATTCCTATTCATTACATTTTCATTTTTTTTT
TCGAGACAGGTTTGGAGGGAGGAGTTGCAATCTTCTGTTTCGTGTGTTGA
CAAGTTTGTTGGTGCTGATGGTATTGGCACAGGAAAGTAGGATATGGATA
TACGCTTTTCAGTACCCCATATACCGCACCGAAACCCGCGAGCATCTCTT
TCTTATGTGTCTATGCTGTGTGTGTACATAGATAACCAACCACATCGATC
GGTAGTGTTCATCTGTATCGCGACCGTCTTGTCACAACGGTTGTTATCGT
AAATAACCCCTCAAAAGATATTTTTGATATGTTTGGTTGTTTCCTTTTTT
TTTTTTTTTTGTCGTTCATCACTTTTTTCTTGTCTTCAATTTTAGTTTTT
GGCCTTTTTTTTTGTCTATTTTCGTCTCGTTTTTTTTTTTTTTTCATGTT
TGTTTTCAGGGATTCGTGCCCGGTATGATGGAAACGTACGATGTGTTCCG
CATCGAATTCCTCCCCAGCCTGGAGTCTTGGGATCTGCTCCGACGTCCCG
ACTCGCTGGCCGCTTTGGCCCTCGATCTCAAACGCCTACGACGGTAAGCA
CAAAAAGCATAAAAGCAAGAAAAGCTCCACGGTTTTCCAAATCTTTTCTC
TTTATGGCACCGATGTTTGTGGATCATAATGATACTATACGCAGACGGGG
AGGGGGGGGGGGGGTAGCGCAGTATAATTTATCCCGCAGTCACGTGGTAA
TGTAGGTGATCCCTGAGTGGATCTAAATTGTGAAATCAAAACGTTACCGA
CAGTACACCTTTGCCTCCCCCTCCTAATTAGCTTGGTTGATTTTTTGTTC
AGGCCACGTAGTATTTTAGTGCAACTATTGACCATGAAGCATCCGATAAA
GGTTTTTGCCTTAGCCTTCCGGGGGTTAAAAACAAAGCAAAACTATTGAC
CATACCCTCCAATTTGTGTTATGGTTGGTAATATCATTCTCACTACGACA
CGCGGTTTCACAAGCGTCACTTCCCAATTCCCCAACCTTTCCCAACGCTT
CAGACTCTCGCTTGATCTGTTCTGTCATGTTCTGTTGTGCCACGGTGTAT
GTGTGCTCTTTCTTGCGTGATGGTTTGGACCTTATTCCGGCACAGAGAGT
ATGAGGTAGGGAGACTACACCTTTCGCCGTTGAAGAGGTGAGTAAGCCTA
CGAGAGAAGATATCAAAGAGAGATAGATGAAGAGATACAGAGAGATATGG
AGAATAGAAGAGTTGCTTGTAAAAATACAAGGCGGTTGGTATGTAGCGTC
GAAAACGTACATTTGGGTATTTTTTAGTTAGTGCACCGTTAATATAAGAA
CGGTTTGATTTTTGTACTTGGAAGTTTAGTTACTTCAAAAACGTTTGTTA
TCATGAGGTTTCTATTCGCTTGACCCACCCACCCACCCCTTGACCTTCTT
AGCCCTCTTGGATTTTTAGAGTGCATGATTGTAGTCTACATTATTTCCCT
TAGCATGCCTTTTAACGAAACCAGTAACCCCCCCTCCCCCCCCCCCTCCC
TCTCCTACCACCATACCTGCTACTGCTACTTCTGCGGGTACCTCGATCAT
ATATTGATCGCCCACGTTTTCACATGCTCCTACACACACACACACACACA
TAACACGAAAAATAGTGCAAGTTTCCACTTCGAGGCGGTCAAGGATCGGC
TCGAGGAGGTTGAGGTGCTTGTGTCTAGGGCGGTGGTGAGGATAGTTTTT
CCGCTGTGGAAAGAACAGGGAGGGGAAGCAGACGATGGCGACGAGAGTAA
CGATCCGGACAGCAGCACGGCAGAGGCTGGACCCGTGTTCGTGTACGGGA
GATTGGGGATCAGGTTGCGACTGGAGTGGACGCAGATGGGCGAAGGGGGA
GAGAAACCCGGTACGGTCGTGATAGTGGCGTTTGCTCACTCACTGCGTGA
ATGCCTTTCGTGCTTTGAAACAGGGGTTTTTGTTTTGAGTGCTCGTTTAG
ATAAATCCCATGCCTTGTCAGTTTTTATTGCGTGTGTGTTTACGTGTTTT
TTTCGCCCTCCCCCGCCCTTTTTTTCTTTTTTTTTGTGGGTCACTCCTAC
GTTACAGGTGAATCCACAAGACTACCTCCCTTCCCTCACCCTCTCCAACC
CCTTTCGTCTGTCCGTTCGTTCGTCCAGCCGTCTCTTGCTGAAGAGGGCA
ATCAATCAGCGCTGACATTACATCCATTAAACGTTCCAAGTGCTCCTGGA
TTTGCGTGATAATGTTTATGGGTTTCGTACATGGTGGTTTTTGGCTCTGT
AACCTCAGCTATCTTAGATATGAGACAAGTTACAAAAGTTACGTGCTCTC
CAGTTGCCCTGACCCTTTCTGGATTATGGTTTTGCTGACAAGAGGACGCA
AGTGATTCTCGAGGCCGTCGGCATGACCTCCAGGATGGTTGTATATACGA
TAGACTTATTTTTGTTATGAACGTTATGGTTGTACTAACTGTGGGACGCG
GGTTGGTTTGGTTATGGATAAGACTTGCCGTGGGTGAAGGGGGGTTTCAT
TTCTATGATGCGTTCACGTGAAGTACATTTTATGTTCGCGTGCAGTACAT
GCTCGAGTGATAGAGTGATATTTCTCTGAGAAGGTTGTTGTAGCCCATGT
CGTGCTTGGTCAAAGAGGTGAGAGAAGCCCTGGTTCTCGGTCGTGATGAA
GTCAAGGTCTATGGTATGTGAGCAGTAGCATCCTGTTCAACTACCAAGCA
GCATATCCAAACATCCGTCAAAGTTCTGTTTAAAACTCAGTGCAGCTGGT
GAGCATGCATGTTTTGTCGTGGGTAAACTGCAGCAATGGTGATAACGCGA
TTAAACACTTGTTCATGTAGTACAGAGTTCTCTCAGCGTAGTGTACTCCA
AGGTCGCACGATGGGGTAAGCTGGGCCCCAGGCTACGAGCTAGCACTACT
AGGCTCACGTGTAAATAGGGGCTGTACGAAAAATGCTTGGTTATCCCCTC
TTTTCTGTCCCATGTGTGGCCACATACGTCGATGGTTGTGCCGCAAATTA
AGGTTTTTGGCTGTACCCGTTGGTCATGGGAAAAATACATGAGGGGAAAA
AAAAGTAAATATTTTGACATAAGGAGAATATGACAACCCCGCCCCTCCCG
GGCCGGTCAGAAGCCGACGTATTGCGCCGTCCCGCTCTTTCCTTTCCACC
CCAGAGTGTACACCCTCTGTACGCACCACAAGCCGTCCCGCTCTTGTGTG
GGAATGTGAGGTCAACAGCACTAGCCGCCGGCTCGCCCTCGTTTTTGGTT
GGGCGGTTGGACGGTTGAGTGATTTTTTATAGACGTATCCGTAAATCTAT
ACCTGGTACTACGCTGAGGAGCTGGGGATGTTTTTTAGGTCATATTCTCA
ACTCTGAATTCGAGTAACTTGTATGTTGTATAACACTGTGATCCACATAA
CAATTGGCGTAATTACGTTAGTTAGTTAGTTACCTTACCACCCCTTGTTG
ATTTTTTTTGCGTATTAGTGTCAATAACAAAAGATTGAAGTCAGCTATAC
TGCTTTACCTCAACGTGGGTACAGCGGATCTATTCTGTGAGCTTCAGAGC
TATGGTTCAATTGACTGGCATGGTTAACTTGCGCATGAATTTTTTCGAGT
TTTCTGTCGTTCATTTGAGAACTAGTTTTATGTTTTGCCTATAGTACAGT
ACAGTACAGTACATATGCGAGTGATACGTGAATACTCAAATTCCGTGTGA
TCTAATTTGGCTGATTAGTGTAAAACTGATGAAGTTTGAAGTCAGCTGCA
TGACCTCAACCCTTCGCCCCCCCCCCCCCAAACAAACAAACAAAAATACA
AAAAAAACGCGCACATGCTGGCAGACGTGCGAGTACTATTTCCTCCGGAG
GCACAAGGGCTCGCTCGGGGATTCCGTCACCCGCCGTGGACGTCAGGCAT
GACCCTGTACGACTACTTACCGCTGACTCAAGCGGCGGTGGCGGAGCCGT
GGCGGCAGCGCAAGCAGCTCGTGGCGACTCTTGGCGCGCGGTACAGCGTT
CTGGAGTATGACGCGCAGGACTTCACTTTCATTCATTTGTTTTTGAAGGT
TTGTGTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig13778:2165..6871+ >mRNA_H-paniculata_contig13778.2323.1 ID=mRNA_H-paniculata_contig13778.2323.1|Name=mRNA_H-paniculata_contig13778.2323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig13778:2165..6871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGCCTCGAGGAGCAGATAAAGGGCTTTACCCAGAGCGAAGACATCGT
GGTGAGCATTTTCGTGCCCTACTGCGAGGCCGGGTCAGAGTGGGAGGTGG
TCGTAGACGCGGAATCGCCGAACCGATGCCCGGACCTGGTGCCGGTGCCG
TCCAACGAAGCAGATGCTGGCAAGGTTGGCCTCGAGGAGCAGATAAAGGG
CTTTACCCAGAGCGAAGACATCGTGGTGAGCATTTTCGTGCCCTACTGCG
AGGCCGGGTCAGAGTGGGAGGTGGTCGTAGACGCGGAATCGCCGAACCGA
TGCCCGGACCTGGTGCCGGTGCCGTCCAACGAAGCAGATGCTGGCAAGGG
ATTCGTGCCCGGTATGATGGAAACGTACGATGTGTTCCGCATCGAATTCC
TCCCCAGCCTGGAGTCTTGGGATCTGCTCCGACGTCCCGACTCGCTGGCC
GCTTTGGCCCTCGATCTCAAACGCCTACGACGGGATTCGTGCCCGGTATG
ATGGAAACGTACGATGTGTTCCGCATCGAATTCCTCCCCAGCCTGGAGTC
TTGGGATCTGCTCCGACGTCCCGACTCGCTGGCCGCTTTGGCCCTCGATC
TCAAACGCCTACGACGAGAGTATGAGGTAGGGAGACTACACCTTTCGCCG
TTGAAGAGAGAGTATGAGGTAGGGAGACTACACCTTTCGCCGTTGAAGAG
TGCAAGTTTCCACTTCGAGGCGGTCAAGGATCGGCTCGAGGAGGTTGAGG
TGCTTGTGTCTAGGGCGGTGGTGAGGATAGTTTTTCCGCTGTGGAAAGAA
CAGGGAGGGGAAGCAGACGATGGCGACGAGAGTAACGATCCGGACAGCAG
CACGGCAGAGGCTGGACCCGTGTTCGTGTACGGGAGATTGGGGATCAGGT
TGCGACTGGAGTGGACGCAGATGGGCGAAGGGGGAGAGAAACCCGTGCAA
GTTTCCACTTCGAGGCGGTCAAGGATCGGCTCGAGGAGGTTGAGGTGCTT
GTGTCTAGGGCGGTGGTGAGGATAGTTTTTCCGCTGTGGAAAGAACAGGG
AGGGGAAGCAGACGATGGCGACGAGAGTAACGATCCGGACAGCAGCACGG
CAGAGGCTGGACCCGTGTTCGTGTACGGGAGATTGGGGATCAGGTTGCGA
CTGGAGTGGACGCAGATGGGCGAAGGGGGAGAGAAACCCGACGTGCGAGT
ACTATTTCCTCCGGAGGCACAAGGGCTCGCTCGGGGATTCCGTCACCCGC
CGTGGACGTCAGGCATGACCCTGTACGACTACTTACCGCTGACTCAAGCG
GCGGTGGCGGAGCCGTGGCGGCAGCGCAAGCAGCTCGTGGCGACTCTTGG
CGCGCGGTACAGCGTTCTGGAGTATGACGCGCAGGACTTCACTTTCATTC
ATTTGTTTTTGAAGGTTTGTGTGACGTGCGAGTACTATTTCCTCCGGAGG
CACAAGGGCTCGCTCGGGGATTCCGTCACCCGCCGTGGACGTCAGGCATG
ACCCTGTACGACTACTTACCGCTGACTCAAGCGGCGGTGGCGGAGCCGTG
GCGGCAGCGCAAGCAGCTCGTGGCGACTCTTGGCGCGCGGTACAGCGTTC
TGGAGTATGACGCGCAGGACTTCACTTTCATTCATTTGTTTTTGAAGGTT
TGTGTG back to top
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