mRNA_H-paniculata_contig1376.2315.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1376.2315.1
Unique NamemRNA_H-paniculata_contig1376.2315.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1376.2315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1376contigH-paniculata_contig1376:16383..17083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size701
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929093.1389163-UTR-H-paniculata_contig1376:16382..165851622929093.1389163-UTR-H-paniculata_contig1376:16382..16585Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1376 16383..16585 +
1691480728.846778-UTR-H-paniculata_contig1376:16382..165851691480728.846778-UTR-H-paniculata_contig1376:16382..16585Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1376 16383..16585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929093.1507576-CDS-H-paniculata_contig1376:16585..170831622929093.1507576-CDS-H-paniculata_contig1376:16585..17083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1376 16586..17083 +
1691480728.8624265-CDS-H-paniculata_contig1376:16585..170831691480728.8624265-CDS-H-paniculata_contig1376:16585..17083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1376 16586..17083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1376.2315.1prot_H-paniculata_contig1376.2315.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1376 16586..17083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1376.2315.1

>prot_H-paniculata_contig1376.2315.1 ID=prot_H-paniculata_contig1376.2315.1|Name=mRNA_H-paniculata_contig1376.2315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MPSFHDPPSLSSTRRSTRLFRPQHSHGRPLHSPGSRDRCTKPSWLQQLQK
QQQQQQMQQQESVVYSGRDDHPWNCNSCPRHRCCSVSRRSARRWLLIITI
VTPLTLVANPQMLLSPQRILSSLGSRSSSYGQKGESGGADGDGGGIGGQL
GGRPKRGEFMAFQVR*
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mRNA from alignment at H-paniculata_contig1376:16383..17083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1376.2315.1 ID=mRNA_H-paniculata_contig1376.2315.1|Name=mRNA_H-paniculata_contig1376.2315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=701bp|location=Sequence derived from alignment at H-paniculata_contig1376:16383..17083+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTGGTGGGGTAAAAGGGACGCTCCCATATCATATTAAAGTCTGACGAC
ACATTCACAAGGACATCCCTCACCGGAGTCGGCCGGTGAACCTTGAGGGG
GAGGATTCACGGAGACCCTTCTCTTTCCCGTTGTCGAACCCATCATTCCT
CCGCAGTGGCTGGAAGAAAGCTGTGCAACAAAACTCTACACCGCAGTATT
TAAATGCCATCGTTCCATGACCCACCCAGCCTCTCGAGCACCCGAAGATC
GACGCGCTTGTTCAGGCCTCAACACTCTCATGGGCGTCCGCTGCACTCAC
CAGGCTCGAGAGATAGATGTACCAAACCTTCATGGCTACAGCAGCTGCAA
AAACAACAACAACAGCAGCAAATGCAACAGCAAGAGTCAGTGGTTTACAG
CGGTCGTGACGATCATCCGTGGAACTGCAATAGTTGTCCGAGGCATCGAT
GCTGCTCCGTTTCCCGGCGGTCTGCAAGGCGATGGCTGCTCATCATTACT
ATTGTGACACCCCTCACGCTCGTAGCCAACCCGCAGATGTTGTTATCCCC
GCAAAGGATCTTGAGCTCGCTGGGAAGCCGTAGCAGCAGCTATGGGCAGA
AGGGAGAGAGTGGTGGCGCTGATGGTGATGGTGGTGGTATCGGAGGCCAA
TTGGGTGGTCGACCAAAACGCGGAGAGTTTATGGCTTTTCAGGTTCGTTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig1376:16383..17083+

>mRNA_H-paniculata_contig1376.2315.1 ID=mRNA_H-paniculata_contig1376.2315.1|Name=mRNA_H-paniculata_contig1376.2315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig1376:16383..17083+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATCGTTCCATGACCCACCCAGCCTCTCGAGCACCCGAAGATCGAC
GCGCTTGTTCAGGCCTCAACACTCTCATGGGCGTCCGCTGCACTCACCAG
GCTCGAGAGATAGATGTACCAAACCTTCATGGCTACAGCAGCTGCAAAAA
CAACAACAACAGCAGCAAATGCAACAGCAAGAGTCAGTGGTTTACAGCGG
TCGTGACGATCATCCGTGGAACTGCAATAGTTGTCCGAGGCATCGATGCT
GCTCCGTTTCCCGGCGGTCTGCAAGGCGATGGCTGCTCATCATTACTATT
GTGACACCCCTCACGCTCGTAGCCAACCCGCAGATGTTGTTATCCCCGCA
AAGGATCTTGAGCTCGCTGGGAAGCCGTAGCAGCAGCTATGGGCAGAAGG
GAGAGAGTGGTGGCGCTGATGGTGATGGTGGTGGTATCGGAGGCCAATTG
GGTGGTCGACCAAAACGCGGAGAGTTTATGGCTTTTCAGGTTCGTTGAAT
GCCATCGTTCCATGACCCACCCAGCCTCTCGAGCACCCGAAGATCGACGC
GCTTGTTCAGGCCTCAACACTCTCATGGGCGTCCGCTGCACTCACCAGGC
TCGAGAGATAGATGTACCAAACCTTCATGGCTACAGCAGCTGCAAAAACA
ACAACAACAGCAGCAAATGCAACAGCAAGAGTCAGTGGTTTACAGCGGTC
GTGACGATCATCCGTGGAACTGCAATAGTTGTCCGAGGCATCGATGCTGC
TCCGTTTCCCGGCGGTCTGCAAGGCGATGGCTGCTCATCATTACTATTGT
GACACCCCTCACGCTCGTAGCCAACCCGCAGATGTTGTTATCCCCGCAAA
GGATCTTGAGCTCGCTGGGAAGCCGTAGCAGCAGCTATGGGCAGAAGGGA
GAGAGTGGTGGCGCTGATGGTGATGGTGGTGGTATCGGAGGCCAATTGGG
TGGTCGACCAAAACGCGGAGAGTTTATGGCTTTTCAGGTTCGTTGA
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