mRNA_H-paniculata_contig13742.2303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13742.2303.1
Unique NamemRNA_H-paniculata_contig13742.2303.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 9.760e-32
Identity = 68/143 (47.55%), Postives = 86/143 (60.14%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLW------LRENGKGCAGTT--LLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            RITFKG PFTP PT S  G    PRK S+AWE+   N ++ GHP NG+S+G+ E SW D R C  W      LR N          +LVLDD K H ++ F   LK++ANT  I IPGG   + QP D ++NK++KR +RGKY
Sbjct:   52 RITFKGTPFTP-PTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPNNGSIVQQRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMKRLLRGKY 193
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BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.100e-31
Identity = 69/143 (48.25%), Postives = 86/143 (60.14%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLWLRENGKGCAGT--------TLLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            RI FKG PF PP T    G    PRK SIAWE+   N S+ G P  GMS+G+ E SWCD R CKLW++++ K              +LVLDD K H +  F   LK+EANT  I IPGG I + QP DR++NK++KR +RG Y
Sbjct:  325 RIIFKGTPFVPPATPGK-GKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMY 466
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BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.050e-30
Identity = 68/143 (47.55%), Postives = 85/143 (59.44%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLWLRENGKGCAGT--------TLLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            RI FKG PF PP T    G    PRK SIAWE+   N S+ G P  GMS+G+ E SWCD R CKLW++++ K              +LVLDD K H +  F   LK+EANT  I IPGG   + QP DR++NK++KR +RG Y
Sbjct:  291 RIIFKGTPFVPPATPGK-GKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMY 432
[Close]
BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.500e-30
Identity = 66/143 (46.15%), Postives = 83/143 (58.04%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLW------LRENGKGCAGTT--LLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            RI FKG PF P PT S  G    PRK S+AWE+   N ++  HP NGMS+G+   SW D R C  W      LR N          +LVLDD K H ++ F   LK++ANT  I IPGG   + QP DR++NK++KR +RGKY
Sbjct:   32 RIIFKGTPFIP-PTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKY 173
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BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 3.910e-30
Identity = 67/143 (46.85%), Postives = 80/143 (55.94%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLW------LRENGKGCAGTT--LLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            R  FKG P  P P     G    PRK SIAWEM   N S+ G+P  GMS+G+ E SWCD R CKLW      LR N          +LVLDD K H +  F   LK++ANT  I IPGG   + QP DR++NK +KR +RG Y
Sbjct:  109 RTIFKGTPLIP-PDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMY 250
[Close]
BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.200e-30
Identity = 68/143 (47.55%), Postives = 83/143 (58.04%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLW------LRENGKGCAGTT--LLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            RI F G PF P PT S  G    PRK S+AWEM  TN ++ GHP NGMS+G+ E SW D R C  W      LR N          +LVLDD K H ++ F   LK++ANT  I IPGG   + QP DR++NK+ KR +R KY
Sbjct:  105 RIIFMGTPFIP-PTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKY 246
[Close]
BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: A0A6H5JB72_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB72_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.840e-29
Identity = 64/135 (47.41%), Postives = 87/135 (64.44%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLWLRENGKGCAGTTLLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            +I FKGKPF PP T    G    PRK SIA E    N ++ G+P +GMS+G+ E +WCD R C LWL E+       ++LVLDD + H ++ F E+L++  NT  ILIPGG   + QP DR++NKE+KR +RG+Y
Sbjct:  328 QIIFKGKPFIPPSTAGR-GRNTQPRKGSIAAESLPANRTKFGYPVSGMSFGVQEKNWCDARECILWLSESW------SILVLDDFRCHRSESFIEDLRRRTNTIVILIPGGLTPLFQPLDRMLNKEMKRLMRGRY 455
[Close]
BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.880e-29
Identity = 67/143 (46.85%), Postives = 85/143 (59.44%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLW------LRENGKGCAGTT--LLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            RI F+G PF P PT S  G    PRK  +AWEM   N ++ GHP NGMS+G+ E SW D R C  W      LR N          +LVLDD K H+++ F   LK++ANT  I IPGG   + QP DR++NK++KR +RGKY
Sbjct:  366 RIIFEGTPFIP-PTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKY 507
[Close]
BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.320e-29
Identity = 67/143 (46.85%), Postives = 84/143 (58.74%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLW------LRENGKGCAGTT--LLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            RI FKG PFTP PT S  G    PRK S+AWE+   N ++ GHP NGMS+G+ E SW D R C  W      LR N          +LVLDD K H ++ F   LK++ANT  I IPG    + QP DR++NK++KR +R KY
Sbjct:  171 RIIFKGTPFTP-PTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKY 312
[Close]
BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.650e-29
Identity = 67/143 (46.85%), Postives = 84/143 (58.74%), Query Frame = -1 
Query:    1 RITFKGKPFTPPPTHSHTGSPPAPRKRSIAWEMSLTNGSRCGHPPNGMSYGMHENSWCDNRGCKLWLRENGKGCAGT--------TLLVLDDCKFHSNQKFQENLKKEANTNTILIPGGQIAVNQPCDRIVNKEVKRGVRGKY 405
            RI FKG PF PP T    G    PRK SIAWE+   N S+ G P  GMS+G+ E SWCD R  KLW++++ K              +LVLDD K H +  F   LK+EANT  I IPGG   + QP DR++NK++KR +RG Y
Sbjct:  284 RIIFKGTPFVPPATPGK-GKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMY 425
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13742.2303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT06_9PHAE9.760e-3247.55DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE7.100e-3148.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRZ1_9PHAE2.050e-3047.55DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE3.500e-3046.15DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FXD3_ECTSI3.910e-3046.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE4.200e-3047.55DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JB72_9PHAE1.840e-2947.41DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE1.880e-2946.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6L9_9PHAE4.320e-2946.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE6.650e-2946.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13742contigH-paniculata_contig13742:1072..1478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929091.725604-CDS-H-paniculata_contig13742:1071..14761622929091.725604-CDS-H-paniculata_contig13742:1071..1476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13742 1072..1476 +
1691480728.1713996-CDS-H-paniculata_contig13742:1071..14761691480728.1713996-CDS-H-paniculata_contig13742:1071..1476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13742 1072..1476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13742.2303.1prot_H-paniculata_contig13742.2303.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13742 1072..1476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13742.2303.1

>prot_H-paniculata_contig13742.2303.1 ID=prot_H-paniculata_contig13742.2303.1|Name=mRNA_H-paniculata_contig13742.2303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
VFSAHPALHFLVDYAVARLVNRYLASRDEDGVCVGLLLQVLLELLVAMEL
AVVEHQQGCPRTSLPVFPQPQLAPPIVTPAVFVHPVRHAIRGVPTPAAVG
QTHLPRNGTLPRCRRAPRVRMRGGGGEWLALESNA
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mRNA from alignment at H-paniculata_contig13742:1072..1478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13742.2303.1 ID=mRNA_H-paniculata_contig13742.2303.1|Name=mRNA_H-paniculata_contig13742.2303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=407bp|location=Sequence derived from alignment at H-paniculata_contig13742:1072..1478+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATTTTCCGCGCACCCCGCGCTTCACTTCCTTGTTGACTATGCGGTCGC
AAGGCTGGTTAACCGCTATTTGGCCTCCAGGGATGAGGATGGTGTTTGTG
TTGGCCTCCTTCTTCAAGTTCTCCTGGAACTTCTGGTTGCTATGGAACTT
GCAGTCGTCGAGCACCAACAAGGTTGTCCCCGCACATCCCTTCCCGTTTT
CCCGCAGCCACAGCTTGCACCCCCGATTGTCACACCAGCTGTTTTCGTGC
ATCCCGTACGACATGCCATTCGGGGGGTGCCCACACCGGCTGCCGTTGGT
CAGACTCATCTCCCACGCAATGGAACGCTTCCGCGGTGCAGGCGGGCTCC
CCGTGTGAGAATGCGTGGGGGGGGGGGTGAATGGCTTGCCCTTGAAAGTA
ATGCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig13742:1072..1478+

>mRNA_H-paniculata_contig13742.2303.1 ID=mRNA_H-paniculata_contig13742.2303.1|Name=mRNA_H-paniculata_contig13742.2303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig13742:1072..1478+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATTTTCCGCGCACCCCGCGCTTCACTTCCTTGTTGACTATGCGGTCGC
AAGGCTGGTTAACCGCTATTTGGCCTCCAGGGATGAGGATGGTGTTTGTG
TTGGCCTCCTTCTTCAAGTTCTCCTGGAACTTCTGGTTGCTATGGAACTT
GCAGTCGTCGAGCACCAACAAGGTTGTCCCCGCACATCCCTTCCCGTTTT
CCCGCAGCCACAGCTTGCACCCCCGATTGTCACACCAGCTGTTTTCGTGC
ATCCCGTACGACATGCCATTCGGGGGGTGCCCACACCGGCTGCCGTTGGT
CAGACTCATCTCCCACGCAATGGAACGCTTCCGCGGTGCAGGCGGGCTCC
CCGTGTGAGAATGCGTGGGGGGGGGGGTGAATGGCTTGCCCTTGAAAGTA
ATGCGGTATTTTCCGCGCACCCCGCGCTTCACTTCCTTGTTGACTATGCG
GTCGCAAGGCTGGTTAACCGCTATTTGGCCTCCAGGGATGAGGATGGTGT
TTGTGTTGGCCTCCTTCTTCAAGTTCTCCTGGAACTTCTGGTTGCTATGG
AACTTGCAGTCGTCGAGCACCAACAAGGTTGTCCCCGCACATCCCTTCCC
GTTTTCCCGCAGCCACAGCTTGCACCCCCGATTGTCACACCAGCTGTTTT
CGTGCATCCCGTACGACATGCCATTCGGGGGGTGCCCACACCGGCTGCCG
TTGGTCAGACTCATCTCCCACGCAATGGAACGCTTCCGCGGTGCAGGCGG
GCTCCCCGTGTGAGAATGCGTGGGGGGGGGGGTGAATGGCTTGCCCTTGA
AAGTAATGCG
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