mRNA_H-paniculata_contig13738.2299.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13738.2299.1
Unique NamemRNA_H-paniculata_contig13738.2299.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13738.2299.1 vs. uniprot
Match: D7G0I7_ECTSI (PhyA2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I7_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 5.040e-19
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VRLLSHLSEDNPPGRVAITIPGCSEGEDLLCPLSKLRALAIRSVDAECIT 150
            +R L+ LS  NPPGRVAITIPGCS+GE+LLCPLSKLRALAIRSVDAECIT
Sbjct:  400 IRELTDLSPSNPPGRVAITIPGCSQGEELLCPLSKLRALAIRSVDAECIT 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13738.2299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0I7_ECTSI5.040e-1984.00PhyA2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13738contigH-paniculata_contig13738:398..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D7G0I7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs28MDD@1,2QTWT@2759
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-2
Ec32 orthologEc-20_002470.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929091.2785535-CDS-H-paniculata_contig13738:397..5471622929091.2785535-CDS-H-paniculata_contig13738:397..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13738 398..547 +
1691480727.9801233-CDS-H-paniculata_contig13738:397..5471691480727.9801233-CDS-H-paniculata_contig13738:397..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13738 398..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13738.2299.1prot_H-paniculata_contig13738.2299.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13738 398..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13738.2299.1

>prot_H-paniculata_contig13738.2299.1 ID=prot_H-paniculata_contig13738.2299.1|Name=mRNA_H-paniculata_contig13738.2299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
VRLLSHLSEDNPPGRVAITIPGCSEGEDLLCPLSKLRALAIRSVDAECIT
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mRNA from alignment at H-paniculata_contig13738:398..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13738.2299.1 ID=mRNA_H-paniculata_contig13738.2299.1|Name=mRNA_H-paniculata_contig13738.2299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig13738:398..547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGGTTGCTCTCTCATCTGTCGGAAGACAACCCTCCCGGACGGGTGGC
CATCACGATTCCTGGGTGCAGCGAGGGGGAGGATCTTCTGTGCCCCCTGT
CCAAGCTGCGGGCGCTTGCCATCCGGTCCGTCGACGCTGAATGCATCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig13738:398..547+

>mRNA_H-paniculata_contig13738.2299.1 ID=mRNA_H-paniculata_contig13738.2299.1|Name=mRNA_H-paniculata_contig13738.2299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig13738:398..547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGGTTGCTCTCTCATCTGTCGGAAGACAACCCTCCCGGACGGGTGGC
CATCACGATTCCTGGGTGCAGCGAGGGGGAGGATCTTCTGTGCCCCCTGT
CCAAGCTGCGGGCGCTTGCCATCCGGTCCGTCGACGCTGAATGCATCACG
GTTCGGTTGCTCTCTCATCTGTCGGAAGACAACCCTCCCGGACGGGTGGC
CATCACGATTCCTGGGTGCAGCGAGGGGGAGGATCTTCTGTGCCCCCTGT
CCAAGCTGCGGGCGCTTGCCATCCGGTCCGTCGACGCTGAATGCATCACG
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