mRNA_H-paniculata_contig13730.2296.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13730.2296.1
Unique NamemRNA_H-paniculata_contig13730.2296.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: A0A7S4QQZ2_9STRA (Alanine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQZ2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.420e-46
Identity = 69/82 (84.15%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H +W SSP VPHDD TLLF NAGMNQ+KPLFLGT DP L+MSKL RA NSQKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:   39 HTYWPSSPCVPHDDPTLLFANAGMNQYKPLFLGTCDPNLEMSKLKRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 120
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BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: A0A7S1TRR3_9STRA (Alanine--tRNA ligase (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRR3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 7.950e-46
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H FW SSPVVPHDD TLLF NAGMNQ+KPLFLGT DP+L M+KLTRA NSQKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:   63 HVFWPSSPVVPHDDPTLLFANAGMNQYKPLFLGTCDPSLDMAKLTRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 144
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BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: A0A0D2ZWB7_BRAOL (Alanine--tRNA ligase n=2 Tax=Brassica TaxID=3705 RepID=A0A0D2ZWB7_BRAOL)

HSP 1 Score: 151 bits (382), Expect = 3.810e-45
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H FW SSPVVPH+D TLLF NAGMNQ+KP+FLGT DP  ++SKLTRA N+QKCIRAGGKHNDLDDVGKD YH TFFEMLGNW
Sbjct:   71 HKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 152
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BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: A0A7J8PB19_GOSRA (Alanine--tRNA ligase n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8PB19_GOSRA)

HSP 1 Score: 153 bits (387), Expect = 4.670e-45
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H +W+SSPVVPH+D TLLF NAGMNQ+KP+FLGTVDP   MSKLTRA N+QKCIRAGGKHNDLDDVGKD YH TFFEMLGNW
Sbjct:   85 HVYWNSSPVVPHNDPTLLFANAGMNQYKPIFLGTVDPNTAMSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 166
[Close]
BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: A0A7S2Y168_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y168_9STRA)

HSP 1 Score: 159 bits (403), Expect = 7.860e-45
Identity = 72/82 (87.80%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H FW SSPVVPHDD TLLF NAGMNQ+KPLFLGT DP L MSKLTRA NSQKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:   71 HTFWPSSPVVPHDDPTLLFANAGMNQYKPLFLGTCDPKLPMSKLTRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 152
[Close]
BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: A0A835Z4U5_9STRA (Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U5_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.330e-44
Identity = 73/82 (89.02%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H FW SSPVVPHDD TLLF NAGMNQFKPLFLGTVDP+L +SKLTRA NSQKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:   36 HTFWPSSPVVPHDDPTLLFANAGMNQFKPLFLGTVDPSLPLSKLTRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 117
[Close]
BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: D7FPP9_ECTSI (Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP9_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 3.380e-44
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H FW SSPVVPHDD TLLF NAGMNQFKPLFLGT DPAL +SKLTRA NSQKCIRAGGKHNDLDDVGKD+YH TFFEMLGNW
Sbjct:   50 HTFWKSSPVVPHDDPTLLFANAGMNQFKPLFLGTADPALPLSKLTRATNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNW 131
[Close]
BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: A0A7R9WBZ2_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WBZ2_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.500e-44
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H FW SSP VPHDD TLLF NAGMNQ+KPLFLGT DP L++SKL RA NSQKCIRAGGKHNDLDDVGKDVYH T FEMLGNW
Sbjct:   11 HTFWPSSPCVPHDDPTLLFANAGMNQYKPLFLGTCDPNLELSKLKRAVNSQKCIRAGGKHNDLDDVGKDVYHHTMFEMLGNW 92
[Close]
BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: A0A2P5AYY8_PARAD (Alanine--tRNA ligase n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5AYY8_PARAD)

HSP 1 Score: 148 bits (374), Expect = 1.520e-43
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H F+ SSPVVPH+D TLLF NAGMNQFKP+FLG VDP   +SKLTRA N+QKCIRAGGKHNDLDDVGKD YH TFFEMLGNW
Sbjct:   89 HVFYKSSPVVPHNDPTLLFANAGMNQFKPIFLGQVDPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 170
[Close]
BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Match: A0A7J8T7Z0_GOSDV (Alanine--tRNA ligase (Fragment) n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8T7Z0_GOSDV)

HSP 1 Score: 152 bits (383), Expect = 1.760e-43
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:    1 HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 246
            H  W SSPVVPH+D TLLF NAGMNQFKP+FLGTVDP   MSKLTRA N+QKCIRAGGKHNDLDDVGKD YH TFFEMLGNW
Sbjct:   80 HVNWKSSPVVPHNDPTLLFANAGMNQFKPIFLGTVDPNTAMSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13730.2296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4QQZ2_9STRA1.420e-4684.15Alanine--tRNA ligase n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1TRR3_9STRA7.950e-4686.59Alanine--tRNA ligase (Fragment) n=2 Tax=Phaeomonas... [more]
A0A0D2ZWB7_BRAOL3.810e-4580.49Alanine--tRNA ligase n=2 Tax=Brassica TaxID=3705 R... [more]
A0A7J8PB19_GOSRA4.670e-4581.71Alanine--tRNA ligase n=1 Tax=Gossypium raimondii T... [more]
A0A7S2Y168_9STRA7.860e-4587.80Alanine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835Z4U5_9STRA1.330e-4489.02Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
D7FPP9_ECTSI3.380e-4487.80Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosu... [more]
A0A7R9WBZ2_9STRA3.500e-4482.93Alanine--tRNA ligase (Fragment) n=1 Tax=Pseudictyo... [more]
A0A2P5AYY8_PARAD1.520e-4380.49Alanine--tRNA ligase n=1 Tax=Parasponia andersonii... [more]
A0A7J8T7Z0_GOSDV1.760e-4382.93Alanine--tRNA ligase (Fragment) n=2 Tax=Gossypium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13730contigH-paniculata_contig13730:5295..6102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue3.5e-36
Seed eggNOG ortholog35128.Thaps40774
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain
EggNOG OGs2XACW@2836,COG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons2
Model size250
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929090.8374403-CDS-H-paniculata_contig13730:5294..53721622929090.8374403-CDS-H-paniculata_contig13730:5294..5372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13730 5295..5372 +
1691480727.7811291-CDS-H-paniculata_contig13730:5294..53721691480727.7811291-CDS-H-paniculata_contig13730:5294..5372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13730 5295..5372 +
1622929090.8549783-CDS-H-paniculata_contig13730:5931..61021622929090.8549783-CDS-H-paniculata_contig13730:5931..6102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13730 5932..6102 +
1691480727.7954547-CDS-H-paniculata_contig13730:5931..61021691480727.7954547-CDS-H-paniculata_contig13730:5931..6102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13730 5932..6102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13730.2296.1prot_H-paniculata_contig13730.2296.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13730 5295..6102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13730.2296.1

>prot_H-paniculata_contig13730.2296.1 ID=prot_H-paniculata_contig13730.2296.1|Name=mRNA_H-paniculata_contig13730.2296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
HAFWSSSPVVPHDDLTLLFVNAGMNQFKPLFLGTVDPALKMSKLTRAANS
QKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW*
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mRNA from alignment at H-paniculata_contig13730:5295..6102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13730.2296.1 ID=mRNA_H-paniculata_contig13730.2296.1|Name=mRNA_H-paniculata_contig13730.2296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=808bp|location=Sequence derived from alignment at H-paniculata_contig13730:5295..6102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCTTTCTGGTCCTCCAGTCCCGTGGTGCCGCACGACGACCTAACCCT
GCTATTCGTCAACGCTGGCATGAATCAGGTGAAGTGGAAAGTGACCTTGA
AATCGTTTTCTGGCACTCTGGTTACCCTTAGGATCTGTCTGTTTTGTATT
AGATAGAAAGGTGTAGGCCATGTATATTTTGGCGAGCAGTTTTTGAATTG
TGCGAGCTCTCCGTTATCGAGATACGTATTCGTTTTCGTCTTCAAAAACA
TCGACACCCCCCGGCTTTAGTGCAATAGATACTAACACAATGTCTGGCAG
TAAGTGGTCAACTGAATCGATAGCTGCTGCCCACACTGCATCGAGCAACA
ATCGGTGTCCGTAGGCCTATACAGATCGGAAGTGGTGATCACGTACAAAC
GATGGGTAGGGTACCGATCAGAGAGGTGGATATATTAACCATGCGCGGAT
CAAGACGGTCTACTGATCGTACGATGTGATGTATTGGCTCACAATGAGTG
GTATTTACTGTTAATGCTTTGATCTGATCTGATCTGATCGGTTCGGTGGA
CCGTGGATTCCCAGTTACAGCTGCCTACTTGAAGTGTCTTGTGCGTTGAC
GGTTCTTGCTGCTGTTGGGTTCTTGCTGCTGTTGTAGTTCAAGCCGCTTT
TCCTGGGAACTGTGGATCCCGCCCTGAAGATGTCCAAGCTCACTCGTGCG
GCTAACTCTCAAAAATGTATCCGTGCGGGGGGGAAGCACAATGACCTGGA
CGACGTGGGAAAGGACGTTTACCATGACACTTTCTTCGAAATGCTTGGCA
ACTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13730:5295..6102+

>mRNA_H-paniculata_contig13730.2296.1 ID=mRNA_H-paniculata_contig13730.2296.1|Name=mRNA_H-paniculata_contig13730.2296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig13730:5295..6102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCTTTCTGGTCCTCCAGTCCCGTGGTGCCGCACGACGACCTAACCCT
GCTATTCGTCAACGCTGGCATGAATCAGCACGCTTTCTGGTCCTCCAGTC
CCGTGGTGCCGCACGACGACCTAACCCTGCTATTCGTCAACGCTGGCATG
AATCAGTTCAAGCCGCTTTTCCTGGGAACTGTGGATCCCGCCCTGAAGAT
GTCCAAGCTCACTCGTGCGGCTAACTCTCAAAAATGTATCCGTGCGGGGG
GGAAGCACAATGACCTGGACGACGTGGGAAAGGACGTTTACCATGACACT
TTCTTCGAAATGCTTGGCAACTGGTGATTCAAGCCGCTTTTCCTGGGAAC
TGTGGATCCCGCCCTGAAGATGTCCAAGCTCACTCGTGCGGCTAACTCTC
AAAAATGTATCCGTGCGGGGGGGAAGCACAATGACCTGGACGACGTGGGA
AAGGACGTTTACCATGACACTTTCTTCGAAATGCTTGGCAACTGGTGA
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