prot_H-paniculata_contig13720.2292.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13720.2292.1
Unique Nameprot_H-paniculata_contig13720.2292.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length66
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13720.2292.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.750e-13
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 0 
Query:    1 VRRLVASVVLANASDALLDERCFRQTLRVVSELWRGFRSHCKVELAVLLEGFLLRTLRAGSPQV 64
            +RRLV S+V+  +++ L+DER FR  L +V+ LW+ FR HCKVELAVL+E  +L+ LR G   V
Sbjct: 1402 IRRLVVSLVINISAEVLMDERIFRLVLELVTALWKRFRRHCKVELAVLMENLVLKLLREGGGAV 1465
[Close]
BLAST of mRNA_H-paniculata_contig13720.2292.1 vs. uniprot
Match: B7G9T2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9T2_PHATC)

HSP 1 Score: 61.2 bits (147), Expect = 2.350e-9
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:    1 VRRLVASVVLANASDALLDERCFRQTLRVVSELWRG--FRSHCKVELAVLLEGFLLRTLRAGSPQVMY 66
            +RR+V   +L N   AL D + F++ +R+VSELW    +RSHCKVEL VL+E + +R L  G PQ ++
Sbjct: 1015 IRRMVVPCLLENTRHALEDPQIFQRVVRIVSELWSSPIYRSHCKVELGVLMEHYGVRILNLG-PQFLF 1081
[Close]
BLAST of mRNA_H-paniculata_contig13720.2292.1 vs. uniprot
Match: A0A7S2LRX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LRX7_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.460e-5
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 0 
Query:    1 VRRLVASVVLANASDALLDERCFRQTLRVVSELWRG--FRSHCKVELAVLLEGFLLRTLRAGSPQV 64
            +RR+V   +L+N S ++ D R +++ LR+ S LW    +R   KV+LA+L+E F+L+ L  G PQ+
Sbjct:  245 IRRMVVPTMLSNTSASIEDCRVYQRVLRITSHLWCNSYYRRKMKVDLAILIEHFVLKILCLG-PQI 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13720.2292.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZFI0_9STRA3.750e-1351.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7G9T2_PHATC2.350e-945.59Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2LRX7_9STRA1.460e-539.39Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13720contigH-paniculata_contig13720:5842..6039 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13720.2292.1mRNA_H-paniculata_contig13720.2292.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13720 5842..6039 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13720.2292.1 ID=prot_H-paniculata_contig13720.2292.1|Name=mRNA_H-paniculata_contig13720.2292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
VRRLVASVVLANASDALLDERCFRQTLRVVSELWRGFRSHCKVELAVLLE
GFLLRTLRAGSPQVMY
back to top