mRNA_H-paniculata_contig13707.2284.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13707.2284.1
Unique NamemRNA_H-paniculata_contig13707.2284.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13707.2284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13707contigH-paniculata_contig13707:469..4630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size344
Cds size270
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13707.2284.1prot_H-paniculata_contig13707.2284.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13707 697..4630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.7603757-UTR-H-paniculata_contig13707:468..5181622929088.7603757-UTR-H-paniculata_contig13707:468..518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13707 469..518 -
1691480726.8617663-UTR-H-paniculata_contig13707:468..5181691480726.8617663-UTR-H-paniculata_contig13707:468..518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13707 469..518 -
1622929088.774251-UTR-H-paniculata_contig13707:673..6961622929088.774251-UTR-H-paniculata_contig13707:673..696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13707 674..696 -
1691480726.8727334-UTR-H-paniculata_contig13707:673..6961691480726.8727334-UTR-H-paniculata_contig13707:673..696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13707 674..696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.7913158-CDS-H-paniculata_contig13707:696..9071622929088.7913158-CDS-H-paniculata_contig13707:696..907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13707 697..907 -
1691480726.8862543-CDS-H-paniculata_contig13707:696..9071691480726.8862543-CDS-H-paniculata_contig13707:696..907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13707 697..907 -
1622929088.8071294-CDS-H-paniculata_contig13707:4571..46301622929088.8071294-CDS-H-paniculata_contig13707:4571..4630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13707 4572..4630 -
1691480726.8965623-CDS-H-paniculata_contig13707:4571..46301691480726.8965623-CDS-H-paniculata_contig13707:4571..4630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13707 4572..4630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13707.2284.1

>prot_H-paniculata_contig13707.2284.1 ID=prot_H-paniculata_contig13707.2284.1|Name=mRNA_H-paniculata_contig13707.2284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
RYSTSESIGRCPQKRKKQCRENRNKITTHLILATKIQRVNHARGCSRIYA
SSNPMMTRCHAYKTRKTLEGCWCGERETVQRGDTRGARL*
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mRNA from alignment at H-paniculata_contig13707:469..4630-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13707.2284.1 ID=mRNA_H-paniculata_contig13707.2284.1|Name=mRNA_H-paniculata_contig13707.2284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4162bp|location=Sequence derived from alignment at H-paniculata_contig13707:469..4630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTACAGCACATCAGAGAGCATTGGACGCTGCCCGCAGAAACGCAAGAA
ACAGTGTAGGTACGTTGGCGGAGCTGGGTCTGCTTTGATTTTGTCACGTC
AGTCACATCGGGGGCAAAAACATCTATTTTGCCATCCATAGAGCTGAAAA
TTTGTCCATGTATCATCTATTTTCCGTCGAGGCCATCTCTTGTCTCTCGT
TGTGAGGTGCCACCCCCGATCGGTGGAGTGGCTCCGGGGGGTGGAGTTCA
CGTGTGCTTACGTACCTTGATAACTCAAGGGCAAGACCACAACAGTGTGA
ATCGACAAAGGCTGTGCCACAAATCAGCAGCAGAGCAGAAGGAAGCTTTA
CACAACCACAACTACACCCCATCAAGAACCTTGTGGCTGACTGTCTGTAC
TGACTGTACCTGTCTTGCTGCCTTTGGTCTCGGCGCTGAATCACAGACAG
TCGTACAGGATACAGAGTGACACACCTCGCGATGGAAATTCAGACAGTAC
GTACGTAGACCCCGAGACCGTCAACTGAAAAGAGAAGATCCATGTTAAGA
CAGCCAGCGCTTGAAACTGGCTCTTATGTCCGCTACATATTGGGTTGCAA
CGACATCGAGTTAGTTTCTCACTGATGAATGAGGGTAGTGATGGTCGTGT
TGAAGTAACTTTAAATTCTCTACGATCATCAAGTGACAAGCAACACGTAG
GCTGCCCTGTCTCTCACCAGGATGCGGACGAATGTCCTGCTTTTGTTCCT
TCCAAGGCAGCCATCTCCCTTCCATTGTATCGCACGCTGTAAGTGAAGGA
GCGCTTGCTTTCCTAACAGAGTTACTCTCTTCGTGTCTGCGTCAACAGCG
GTGTGGTTGTGCGATACGAAGGGTGTCGCCAGAGGTCGAAATCTACAGGA
CCGACACGAAATAAGCGGCGCAATCTCGGTCATAGAACGCAGGGTTGATA
TGTCATTTTCCATCCAATGCCAACATCCCCAGTGGCAGGGTCACTGTGTC
TTTGGATCAGACGTTGATAAGGTTTTTCCTGTAGTTTTCCTGGAGTAGAT
ATTGTTGCCTGAGGGGGGTTATCTGTTGCAAGAAGGAGTGACGCGGTGGC
ATATGCGTGTTTATAGGTCTCTTCCTTCCAGGTTTTACACCCATGCTTGG
GGGAATTATACGTGGAGCTCCATGGCCGGGGGTGTGTCTGATGTCCAAAT
TCGATGTCTATCACATCGTGGCGTTGCTGCCCACGCCCTACAGAAGATAC
AGAGTTCTGTGGACTAAAAAGAATGTACTGTTGTAGTTTTGTGATGTGGT
TGCGTTTTACGAACTTGGGGGCGGGTAGAGAATTGGCAATTCCAAAATAG
AACAACACTAGATATTTAACGGCCACGGCACCGACCGTATCTTTTGTTCA
GCAGCCGCTTGCACGATCTTTGCACGATCTTTGGCGGGGTTCACGTGCTA
GCTTCAACTAGCTTTGTGTTTACAATACGCTTGCTTACATTTGCACCTTG
CCTCTCAGCTCTCCTGGCATCGGGATTTACACCGCGGTTTTACTGGACTG
ACAGTGGCATCCTACATCAACGTTTATACCTAATATAGAAAGCACATAAA
GTGATTATCTACTCCTACGCATGACACTTTTTGCAACCCGTAAAGCTTCG
CATGTACTATAAAACATTTTTCAAGTTAATATCCGAAAAATTTCAAACAC
GGGCAGAACACTATGCCATAGCACGGTGGTTCAATAGCGGCGAGTACCGC
AGCGCCATGATATCCAAAGCTGCGGGAACCATGCCCATCCCACCTGAGCT
TTGGTCAGAATTTGAGGTTGAGCTTGATCGCGCAATAGCAGTCACGCATT
CTGCGGAGAAGGGTTATGTGGATCGTCGAGGGATGTCGCTGGCCTGTATG
GCTGTGGTGTCGGCAGGAATAAGCTTGAGCAAGGTGATCTATTGTCTGGT
ACAGTATATGATGCGCCCAACAGCACGATATTGGGGATGTCAATCGCATC
GTAACCAATTCATCGTCGAAGAAGTCGTTGTTGTTGGAGCTATTGCAGCA
GCAGCAGTACCTTCATCATTTATGCGACAGTGTAACCGCCTAACGTTGCG
GTTATAATAGCCTCGAAGTCTGGTTTTTGGGGTAATACGCGAAGTCTTTT
TCGATTTGTCGACTCTCAAGTAACTTATGTGCAACTCTAGATATAGAATA
TAGCTGTAGAGTAAGGTTTACTGACCTAGGCGATAGAGTCAAATATTTTA
TGCGGTTTTGAAAACGTAGCTGGCTGATACAGCTCAACCGCGTATTGCTC
GTATATGCCTGCCCTGTAGGTCCGAGCAACTGCTCAGACCAGACATCTCT
CGAATGCAAAGGCGGCATTGAGCAAGGCTGCCCCCAAGGTCCGAGGAGCG
GCTTTTGCGTCTGTGGGGTAGGTGCCCGAACGATGTTTCAATCTTCATGT
TTTCCTGGCTCAGCAATTTTCAATGCTTTATCCCGAGCCTCACGCCTCGC
TCTACTGATTGCATTTTTTTTTTCCCAGCGTATTAGTACGTCAATTGATT
GATACGCGGGGTCCGAAGGCTGTAAGTGGGACTATAGAGTGTAATTCACC
AGCCGTTAACCGGATGGTGTCCAGGTTATTTGCTATAAATATATCACGCG
GTGGGGGCAGCAGTCCCACTCGATCGTCAACGTTGGAATTGGCGGCGTTG
TTCTCTTGCGAGTATTATTTCACAGGCAATTCTGATGGTTGCTACTCTAT
AATTTCTCCCAATGTTTGAGAACAGTAAATCGTGAGTCCCAAACACTAAA
CACACAACCCTACCGTAACGATGCGATGGGATGAGATTTGAAGCCTGTCA
CTTTGACCAAGGGAGGCGTGTTCATTGAAAACATCCGCTTTGTTCGACTG
GAGTATGACTGCGACAAACTGTGACCCCTACTGAGCGATTGCACTTTCTG
TTGTATGACTTCGAAGATTTTCACATAAGCTCTCTGCCAAACTCAAGTGT
ACACAACATAACAAAACAATCATTGTTCCACACGAAGCCCCGTGGCGCGA
GACATCGGATCCTCTGCCCACAACGCACATGTGACCATCGGCATTTTCTC
TTGGAATTTTTCTAGTCTACAATCGTAAGGAATTTGTGCGTTGGTACTAT
CTCAAAACAAGCAGGGACCCAGAACAAGCGATGCTTGAGGCGAATGTCAC
TATCTTATCCACTTTAGAGGCCCTTGTAGGGAGCATGGAAAATCCGCAGA
AGGAGCGAGTTCAGTTGAATGATGGCTTCAGCGGGGGACTTCAGGTAAAA
TAATCTTTCAGAAATGGGGATCGAAAACAACAAACCGCAGGCATCAATGC
TACTGGTAGAGAGTAGGAAGAAATTATCCAGTTTTTCGACGGTTAGGGGT
TGCTGCAAGTGAACGTTGATGGTTCATTTTTGCAGCCATTTGTCTATATC
ATGGCTATCGCGAATGTGCAAGTGTTGACGTCTGCTAATATACTAGAACA
CCACTGCGAAACCAAGTCCTGTATACGTAGACCATCTGACATGGGTAGAG
CAACATACACCGGGCAGCAGAAGCAGAAGCAGCAGCAGCAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACGATATTGAGTTTCTGTCAA
GCCTCCACACCTGTCCTCCGGAACGATCGACCCCTTTGCTAATCCACACA
CGCCGTCCGTTCACCGATCACAGAGAAAACCGGAACAAGATAACGACGCA
TTTGATTCTAGCGACAAAGATCCAAAGGGTAAACCATGCCAGGGGCTGTT
CCAGAATTTACGCGTCTTCGAACCCGATGATGACCCGCTGTCATGCTTAC
AAGACGAGGAAGACATTGGAAGGGTGTTGGTGTGGGGAAAGGGAAACCGT
GCAGAGGGGAGATACCCGAGGCGCCCGCTTGTAGCTGCTGTGGATCCGCG
GCTAGCGGTAAGCAAAAGTAGTAGAGGTGTCACAAAAAACATTATCCCGG
AGCGCCCGGGAGGGGTGAAGGTTCGTAATTATCGCATTATGATAATTATT
GATGAATCGAGAGCATCATTCATCCCTGCGCCATTGCCTTGTCTTCTGCG
TATGCATAGTAGGAGAGAGAGAGAAAGCTGTACTGGGGCACCACCAGGCT
GCATCAAAAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig13707:469..4630-

>mRNA_H-paniculata_contig13707.2284.1 ID=mRNA_H-paniculata_contig13707.2284.1|Name=mRNA_H-paniculata_contig13707.2284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig13707:469..4630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTACAGCACATCAGAGAGCATTGGACGCTGCCCGCAGAAACGCAAGAA
ACAGTGTAGCGCTACAGCACATCAGAGAGCATTGGACGCTGCCCGCAGAA
ACGCAAGAAACAGTGTAGAGAAAACCGGAACAAGATAACGACGCATTTGA
TTCTAGCGACAAAGATCCAAAGGGTAAACCATGCCAGGGGCTGTTCCAGA
ATTTACGCGTCTTCGAACCCGATGATGACCCGCTGTCATGCTTACAAGAC
GAGGAAGACATTGGAAGGGTGTTGGTGTGGGGAAAGGGAAACCGTGCAGA
GGGGAGATACCCGAGGCGCCCGCTTGTAGAGAAAACCGGAACAAGATAAC
GACGCATTTGATTCTAGCGACAAAGATCCAAAGGGTAAACCATGCCAGGG
GCTGTTCCAGAATTTACGCGTCTTCGAACCCGATGATGACCCGCTGTCAT
GCTTACAAGACGAGGAAGACATTGGAAGGGTGTTGGTGTGGGGAAAGGGA
AACCGTGCAGAGGGGAGATACCCGAGGCGCCCGCTTGTAG
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