prot_H-paniculata_contig13701.2282.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig13701.2282.1
Unique Name	prot_H-paniculata_contig13701.2282.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	208

Homology

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: D7FIH9_ECTSI (Sof1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH9_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 1.310e-126
Identity = 189/207 (91.30%), Postives = 197/207 (95.17%), Query Frame = 0

Query:    1 MRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKELT 207
            MRSNAVAWNPQEPMN VCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFAS SYDRTVRVFPHR+GRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLG +VPRE RK EYR SLK+RYEHMPEVRRIAKHRHVP ++KKAAEAER+QRDKERRK DNR+KHSK GTVE VPERKKK+VKELT
Sbjct:  241 MRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRDSLKKRYEHMPEVRRIAKHRHVPRIVKKAAEAERVQRDKERRKVDNRIKHSKAGTVETVPERKKKIVKELT 447

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: B9RVU4_RICCO (DDB1- and CUL4-associated factor 13 n=2 Tax=Ricinus communis TaxID=3988 RepID=B9RVU4_RICCO)

HSP 1 Score: 257 bits (657), Expect = 4.640e-81
Identity = 120/204 (58.82%), Postives = 159/204 (77.94%), Query Frame = 0

Query:    2 RSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKE 205
            R+N++AWNP EPMN   ANED N Y+FD R L++A  +HKDHVSAVMD+ FSPTG+EF + SYDRTVR+FP+  G SRE+YHTKRMQRVFCV FS D  ++++GSDDTNLR+WKA ASE+LG ++PRE ++ EY +++K RY+H+PE++RI +HRH+P  I KAAE  R   + E+RK D R  HS PG+V   P RK++++KE
Sbjct:  247 RTNSIAWNPMEPMNFTAANEDCNCYSFDARKLDEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSCDGSYIISGSDDTNLRLWKAKASEQLGVLLPRERKRHEYNEAVKNRYKHLPEIKRIVRHRHLPKPIYKAAEIRRTVTEAEKRKEDRRRAHSTPGSVVTEPLRKRRIIKE 450

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A2Z7D023_9LAMI (DDB1- and CUL4-associated factor 13 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7D023_9LAMI)

HSP 1 Score: 256 bits (654), Expect = 1.350e-80
Identity = 118/205 (57.56%), Postives = 161/205 (78.54%), Query Frame = 0

Query:    2 RSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 206
            ++N++AWNP EPMN   ANED N Y++D R LN+A  +HKDHVSAVMD+ +SPTG+EF + SYDRTVR+F +  G SRE+YHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE +K EY ++++ RY+H+PEV+RI +HRH+P  I KAA   R+  D ER+K + R  HS PG++  VP RK+++++E+
Sbjct:  248 KTNSIAWNPMEPMNFTAANEDCNCYSYDARKLNEARCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKHEYLEAVRNRYKHLPEVKRIVRHRHLPKAIYKAASLRRIMADAERKKAERRRAHSAPGSMAQVPLRKRRIIQEV 452

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A0A0K1Y9_CUCSA (DDB1- and CUL4-associated factor 13 n=12 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0K1Y9_CUCSA)

HSP 1 Score: 256 bits (653), Expect = 1.800e-80
Identity = 118/205 (57.56%), Postives = 163/205 (79.51%), Query Frame = 0

Query:    2 RSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 206
            ++N++ WNP+EPMN   ANED N Y++D R L++A  +H+DHVSAVMD+ FSP+G+EF + SYDRT+R+FP+  G SRE+YHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE+RK EY++++K RY+H+PEV+RI +HRH+P  I KAA   R   D ERRK + R  HS PG++  VP R+++++KE+
Sbjct:  246 KTNSICWNPREPMNFTAANEDCNCYSYDSRKLDEAKCVHRDHVSAVMDIDFSPSGREFVTGSYDRTIRIFPYNGGHSREIYHTKRMQRVFCVRFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPREKRKHEYQEAVKNRYKHLPEVKRIVRHRHLPKPIFKAAALRRTIIDAERRKEERRKAHSAPGSISTVPLRRRRIIKEV 450

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: W1P0N3_AMBTC (DDB1- and CUL4-associated factor 13 n=3 Tax=Magnoliopsida TaxID=3398 RepID=W1P0N3_AMBTC)

HSP 1 Score: 256 bits (653), Expect = 1.850e-80
Identity = 120/205 (58.54%), Postives = 161/205 (78.54%), Query Frame = 0

Query:    2 RSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 206
            R+NA+AWNP+EPMN   ANED N Y++D+RN+ QA  +H+DHVSAVMD+ +SPTG+EF + SYDRTVR+F + +G SRE+YHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE +K EY  ++K R++H+PEV+RI +HRH+P  I KAA   R   D E++K + +  HS PGTV  VP RK+++V E+
Sbjct:  247 RTNAIAWNPREPMNFSLANEDCNCYSYDMRNMEQAKCVHRDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNAGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKQEYLDAVKERFKHLPEVKRIVRHRHLPKPIYKAASLRRTMADAEKKKEERKRAHSAPGTVVTVPLRKRRIVSEI 451

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A7N0TIW4_KALFE (Sof1 domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TIW4_KALFE)

HSP 1 Score: 254 bits (650), Expect = 5.230e-80
Identity = 119/205 (58.05%), Postives = 160/205 (78.05%), Query Frame = 0

Query:    2 RSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 206
            R+NA+AWNP EPMN   ANED N Y++D R L++A  +HKDHVSAVMD+ FSPTG+EFA+ SYDRTVR+FP+  G SREVYH KRMQRVFCV FS D  ++++GSDDTNLR+WKA ASE+LG ++PRE++K +Y +++K+RY+H+PEV+RI +HRH+P  I KAA   R   D  +RK + R  HS PG++   P R++K++KE+
Sbjct:  247 RTNAIAWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKDHVSAVMDIDFSPTGREFATGSYDRTVRIFPYNGGHSREVYHGKRMQRVFCVKFSCDGSYIISGSDDTNLRLWKAKASEQLGVLLPREKKKHDYLEAVKKRYKHLPEVKRIIRHRHLPKPIFKAAALRRTMEDASKRKEERRKAHSAPGSITTRPLRRRKIIKEI 451

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: UPI000C1D637B (DDB1- and CUL4-associated factor 13 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D637B)

HSP 1 Score: 252 bits (643), Expect = 1.130e-79
Identity = 118/205 (57.56%), Postives = 159/205 (77.56%), Query Frame = 0

Query:    2 RSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 206
            ++N++AWNP EPMN   ANED N Y++D R LN+A  +HKDHVSAVMD+ +SPTG+EF S SYDRTVR+F +  G SREVYHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE +K EY +++K RY+H+PEV+RI +HRH+P  I KAA   R+  + ER+K + R  HS PG++     RK+++++E+
Sbjct:  188 KTNSIAWNPMEPMNFTAANEDCNCYSYDARKLNEARCVHKDHVSAVMDIDYSPTGREFVSGSYDRTVRIFQYNGGHSREVYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPKAIYKAASLRRIMSEAERKKEERRRAHSAPGSIPKESLRKRRIIEEV 392

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A024UAB8_9STRA (Sof1 domain-containing protein n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAB8_9STRA)

HSP 1 Score: 253 bits (645), Expect = 4.540e-79
Identity = 132/229 (57.64%), Postives = 169/229 (73.80%), Query Frame = 0

Query:    1 MRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQR-----------------------VFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 206
            MR+NA+AWNP EP +   ANED NLYTFD+RNL++A+MIHKDHVSAVMDV++SPTG+EF S SYDR++R+F  RS +SREVYHTKRMQR                       +F V FSADA+FV++GSDDTN+RIWKA AS  LG + PRE +KLEY  +LK+RY+H+ EV+RIAKHRHVP  IKKAA A++  +++E +K  N  KHSKPG V +V  RKK V++++
Sbjct:  239 MRNNALAWNPMEPYHFTVANEDHNLYTFDMRNLDRAVMIHKDHVSAVMDVAYSPTGKEFVSGSYDRSIRIFNVRSAKSREVYHTKRMQRWVHKIAGWMHRGDLMGGLFLNCRIFAVKFSADAKFVLSGSDDTNIRIWKAQASRTLGKLNPRERKKLEYNDALKKRYQHLTEVKRIAKHRHVPKAIKKAAAAKQEGKERETKKLANVRKHSKPGKVPLVDIRKKSVIRQV 467

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A2C9URQ4_MANES (DDB1- and CUL4-associated factor 13 n=4 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9URQ4_MANES)

HSP 1 Score: 252 bits (643), Expect = 5.900e-79
Identity = 119/204 (58.33%), Postives = 157/204 (76.96%), Query Frame = 0

Query:    2 RSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKE 205
            ++N++AWNP EPMN   ANED N Y++D R   +A  +HKDHVSAVMD+ FSPTG+EFA+ SYDRTVR+F +  G SRE+YHTKRMQRVFCV FS DA ++++GSDDTNLR+WKA ASE+LG ++PRE ++ EY ++LK RY+H+PEV+RI +HRH+P  I KAA   R   + ERRK + R  HS PG+V   P RK++++KE
Sbjct:  247 KTNSIAWNPMEPMNFTVANEDCNCYSYDARKFEEAKCVHKDHVSAVMDIDFSPTGREFATGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYIISGSDDTNLRLWKAKASEQLGVLLPRERKRHEYNEALKNRYKHLPEVKRIVRHRHLPKPIYKAAALRRTVTEAERRKEERRKAHSAPGSVVTEPLRKRRIIKE 450

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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: V4P4J6_EUTSA (DDB1- and CUL4-associated factor 13 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4P4J6_EUTSA)

HSP 1 Score: 252 bits (643), Expect = 5.900e-79
Identity = 120/205 (58.54%), Postives = 162/205 (79.02%), Query Frame = 0

Query:    2 RSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 206
            ++N++AWNP EPMNL  ANED + Y+FD R L++A  +HKDHVSAVMD+ +SPTG+EF + SYDR+VR+FP+  G SRE+YHTKRMQRVFCV +S DA +V++GSDDTN+R+WK+ ASE+LG ++PRE+RK EY +S+K RY+H+PEV+RI +H+HVP  I KA    R + D +RRK   R  HS PGTV  VP RK++++KE+
Sbjct:  247 KTNSIAWNPMEPMNLTAANEDGSCYSFDGRKLDEAKCVHKDHVSAVMDIDYSPTGREFITGSYDRSVRIFPYNGGHSREIYHTKRMQRVFCVKYSCDATYVISGSDDTNVRLWKSKASEQLGVLLPREQRKHEYDESVKNRYKHLPEVKRIVRHKHVPKPIFKAIGIIRAKNDSKRRKDARRKAHSAPGTVITVPLRKRRIIKEV 451

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FIH9_ECTSI	1.310e-126	91.30	Sof1 domain-containing protein n=2 Tax=Ectocarpus ...	[more]
B9RVU4_RICCO	4.640e-81	58.82	DDB1- and CUL4-associated factor 13 n=2 Tax=Ricinu...	[more]
A0A2Z7D023_9LAMI	1.350e-80	57.56	DDB1- and CUL4-associated factor 13 n=1 Tax=Dorcoc...	[more]
A0A0A0K1Y9_CUCSA	1.800e-80	57.56	DDB1- and CUL4-associated factor 13 n=12 Tax=Cucur...	[more]
W1P0N3_AMBTC	1.850e-80	58.54	DDB1- and CUL4-associated factor 13 n=3 Tax=Magnol...	[more]
A0A7N0TIW4_KALFE	5.230e-80	58.05	Sof1 domain-containing protein n=1 Tax=Kalanchoe f...	[more]
UPI000C1D637B	1.130e-79	57.56	DDB1- and CUL4-associated factor 13 n=1 Tax=Olea e...	[more]
A0A024UAB8_9STRA	4.540e-79	57.64	Sof1 domain-containing protein n=11 Tax=Aphanomyce...	[more]
A0A2C9URQ4_MANES	5.900e-79	58.33	DDB1- and CUL4-associated factor 13 n=4 Tax=Croton...	[more]
V4P4J6_EUTSA	5.900e-79	58.54	DDB1- and CUL4-associated factor 13 n=1 Tax=Eutrem...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 74..115 e-value: 0.041 score: 23.0 coord: 33..72 e-value: 1.7E-5 score: 34.2
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 38..71 e-value: 2.3E-4 score: 21.9 coord: 86..115 e-value: 2.8E-5 score: 24.8
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 40..81 score: 11.01
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 83..124 score: 11.511
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..141 e-value: 3.7E-25 score: 90.5
IPR007287	Sof1-like protein	PFAM	PF04158	Sof1	coord: 116..202 e-value: 3.2E-32 score: 110.6
None	No IPR available	PANTHER	PTHR22851	U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN	coord: 1..205
None	No IPR available	PANTHER	PTHR22851:SF0	DDB1- AND CUL4-ASSOCIATED FACTOR 13	coord: 1..205
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1..124 score: 19.802
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	SUPERFAMILY	50998	Quinoprotein alcohol dehydrogenase-like	coord: 4..120

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig13701	contig	H-paniculata_contig13701:1787..6619 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig13701.2282.1	mRNA_H-paniculata_contig13701.2282.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig13701 836..6667 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig13701.2282.1 ID=prot_H-paniculata_contig13701.2282.1|Name=mRNA_H-paniculata_contig13701.2282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDV
SFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADAR
FVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVR
RIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKK
KVVKELT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR007287	Sof1
IPR017986	WD40_repeat_dom
IPR011047	Quinoprotein_ADH-like_supfam