mRNA_H-paniculata_contig13701.2282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13701.2282.1
Unique NamemRNA_H-paniculata_contig13701.2282.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: D7FIH9_ECTSI (Sof1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH9_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 1.120e-124
Identity = 193/214 (90.19%), Postives = 204/214 (95.33%), Query Frame = 1 
Query:   28 IQQVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKELT 669
            +++VVLQMRSNAVAWNPQEPMN VCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFAS SYDRTVRVFPHR+GRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLG +VPRE RK EYR SLK+RYEHMPEVRRIAKHRHVP ++KKAAEAER+QRDKERRK DNR+KHSK GTVE VPERKKK+VKELT
Sbjct:  234 MRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRDSLKKRYEHMPEVRRIAKHRHVPRIVKKAAEAERVQRDKERRKVDNRIKHSKAGTVETVPERKKKIVKELT 447
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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: W1P0N3_AMBTC (DDB1- and CUL4-associated factor 13 n=3 Tax=Magnoliopsida TaxID=3398 RepID=W1P0N3_AMBTC)

HSP 1 Score: 262 bits (670), Expect = 2.730e-78
Identity = 122/211 (57.82%), Postives = 166/211 (78.67%), Query Frame = 1 
Query:   34 QVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 666
            ++V+Q R+NA+AWNP+EPMN   ANED N Y++D+RN+ QA  +H+DHVSAVMD+ +SPTG+EF + SYDRTVR+F + +G SRE+YHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE +K EY  ++K R++H+PEV+RI +HRH+P  I KAA   R   D E++K + +  HS PGTV  VP RK+++V E+
Sbjct:  241 KIVMQTRTNAIAWNPREPMNFSLANEDCNCYSYDMRNMEQAKCVHRDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNAGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKQEYLDAVKERFKHLPEVKRIVRHRHLPKPIYKAASLRRTMADAEKKKEERKRAHSAPGTVVTVPLRKRRIVSEI 451
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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: B9RVU4_RICCO (DDB1- and CUL4-associated factor 13 n=2 Tax=Ricinus communis TaxID=3988 RepID=B9RVU4_RICCO)

HSP 1 Score: 261 bits (668), Expect = 5.390e-78
Identity = 120/210 (57.14%), Postives = 164/210 (78.10%), Query Frame = 1 
Query:   34 QVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKE 663
            +++++ R+N++AWNP EPMN   ANED N Y+FD R L++A  +HKDHVSAVMD+ FSPTG+EF + SYDRTVR+FP+  G SRE+YHTKRMQRVFCV FS D  ++++GSDDTNLR+WKA ASE+LG ++PRE ++ EY +++K RY+H+PE++RI +HRH+P  I KAAE  R   + E+RK D R  HS PG+V   P RK++++KE
Sbjct:  241 KLIMRTRTNSIAWNPMEPMNFTAANEDCNCYSFDARKLDEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSCDGSYIISGSDDTNLRLWKAKASEQLGVLLPRERKRHEYNEAVKNRYKHLPEIKRIVRHRHLPKPIYKAAEIRRTVTEAEKRKEDRRRAHSTPGSVVTEPLRKRRIIKE 450
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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A0A0K1Y9_CUCSA (DDB1- and CUL4-associated factor 13 n=12 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0K1Y9_CUCSA)

HSP 1 Score: 261 bits (666), Expect = 1.030e-77
Identity = 119/211 (56.40%), Postives = 168/211 (79.62%), Query Frame = 1 
Query:   34 QVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 666
            +V+++ ++N++ WNP+EPMN   ANED N Y++D R L++A  +H+DHVSAVMD+ FSP+G+EF + SYDRT+R+FP+  G SRE+YHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE+RK EY++++K RY+H+PEV+RI +HRH+P  I KAA   R   D ERRK + R  HS PG++  VP R+++++KE+
Sbjct:  240 KVIMRTKTNSICWNPREPMNFTAANEDCNCYSYDSRKLDEAKCVHRDHVSAVMDIDFSPSGREFVTGSYDRTIRIFPYNGGHSREIYHTKRMQRVFCVRFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPREKRKHEYQEAVKNRYKHLPEVKRIVRHRHLPKPIFKAAALRRTIIDAERRKEERRKAHSAPGSISTVPLRRRRIIKEV 450
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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A7N0TIW4_KALFE (Sof1 domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TIW4_KALFE)

HSP 1 Score: 261 bits (666), Expect = 1.060e-77
Identity = 120/211 (56.87%), Postives = 165/211 (78.20%), Query Frame = 1 
Query:   34 QVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 666
            ++++Q R+NA+AWNP EPMN   ANED N Y++D R L++A  +HKDHVSAVMD+ FSPTG+EFA+ SYDRTVR+FP+  G SREVYH KRMQRVFCV FS D  ++++GSDDTNLR+WKA ASE+LG ++PRE++K +Y +++K+RY+H+PEV+RI +HRH+P  I KAA   R   D  +RK + R  HS PG++   P R++K++KE+
Sbjct:  241 KIIMQTRTNAIAWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKDHVSAVMDIDFSPTGREFATGSYDRTVRIFPYNGGHSREVYHGKRMQRVFCVKFSCDGSYIISGSDDTNLRLWKAKASEQLGVLLPREKKKHDYLEAVKKRYKHLPEVKRIIRHRHLPKPIFKAAALRRTMEDASKRKEERRKAHSAPGSITTRPLRRRKIIKEI 451
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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A2Z7D023_9LAMI (DDB1- and CUL4-associated factor 13 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7D023_9LAMI)

HSP 1 Score: 261 bits (666), Expect = 1.090e-77
Identity = 118/211 (55.92%), Postives = 166/211 (78.67%), Query Frame = 1 
Query:   34 QVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 666
            +++++ ++N++AWNP EPMN   ANED N Y++D R LN+A  +HKDHVSAVMD+ +SPTG+EF + SYDRTVR+F +  G SRE+YHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE +K EY ++++ RY+H+PEV+RI +HRH+P  I KAA   R+  D ER+K + R  HS PG++  VP RK+++++E+
Sbjct:  242 KIIMRTKTNSIAWNPMEPMNFTAANEDCNCYSYDARKLNEARCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKHEYLEAVRNRYKHLPEVKRIVRHRHLPKAIYKAASLRRIMADAERKKAERRRAHSAPGSMAQVPLRKRRIIQEV 452
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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A5A7UV83_CUCME (DDB1- and CUL4-associated factor 13 n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UV83_CUCME)

HSP 1 Score: 265 bits (678), Expect = 1.860e-77
Identity = 124/242 (51.24%), Postives = 182/242 (75.21%), Query Frame = 1 
Query:   34 QVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKELT*LIVVNLNISLPSSSSCYCQSRARS*FAVI 759
            +V+++ ++N++ WNP+EPMN   ANED N Y++D R L++A  +H+DHVSAVMD+ FSP+G+EF + SYDRT+R+FP+  G SRE+YHTKRMQRVFCV FS+DA +V++GSDDTNLR+WKA ASE+LG ++PRE+RK EY++++K RY+H+PEV+RI +HRH+P  I KAA   R   D ERRK + R  HS PG++  VP R+++++KE+  +I   +  ++ S    + QS A +   ++
Sbjct:  240 KVIMRTKTNSICWNPREPMNFTAANEDCNCYSYDSRKLDEAKCVHRDHVSAVMDIDFSPSGREFVTGSYDRTIRIFPYNGGHSREIYHTKRMQRVFCVRFSSDASYVISGSDDTNLRLWKAKASEQLGVLLPREKRKHEYQEAVKNRYKHLPEVKRIVRHRHLPKPIFKAAALRRTIMDAERRKEERRKAHSTPGSISTVPLRRRRIIKEVEFMICSLMGSAISSVFKNFLQSDAMNISGIL 481
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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: UPI000C1D637B (DDB1- and CUL4-associated factor 13 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D637B)

HSP 1 Score: 256 bits (655), Expect = 8.450e-77
Identity = 118/211 (55.92%), Postives = 164/211 (77.73%), Query Frame = 1 
Query:   34 QVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 666
            +++++ ++N++AWNP EPMN   ANED N Y++D R LN+A  +HKDHVSAVMD+ +SPTG+EF S SYDRTVR+F +  G SREVYHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE +K EY +++K RY+H+PEV+RI +HRH+P  I KAA   R+  + ER+K + R  HS PG++     RK+++++E+
Sbjct:  182 KIIMRTKTNSIAWNPMEPMNFTAANEDCNCYSYDARKLNEARCVHKDHVSAVMDIDYSPTGREFVSGSYDRTVRIFQYNGGHSREVYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPKAIYKAASLRRIMSEAERKKEERRRAHSAPGSIPKESLRKRRIIEEV 392
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BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A024UAB8_9STRA (Sof1 domain-containing protein n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAB8_9STRA)

HSP 1 Score: 259 bits (661), Expect = 9.020e-77
Identity = 133/236 (56.36%), Postives = 176/236 (74.58%), Query Frame = 1 
Query:   28 IQQVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQR-----------------------VFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVKEL 666
            ++++V++MR+NA+AWNP EP +   ANED NLYTFD+RNL++A+MIHKDHVSAVMDV++SPTG+EF S SYDR++R+F  RS +SREVYHTKRMQR                       +F V FSADA+FV++GSDDTN+RIWKA AS  LG + PRE +KLEY  +LK+RY+H+ EV+RIAKHRHVP  IKKAA A++  +++E +K  N  KHSKPG V +V  RKK V++++
Sbjct:  232 MRKIVMEMRNNALAWNPMEPYHFTVANEDHNLYTFDMRNLDRAVMIHKDHVSAVMDVAYSPTGKEFVSGSYDRSIRIFNVRSAKSREVYHTKRMQRWVHKIAGWMHRGDLMGGLFLNCRIFAVKFSADAKFVLSGSDDTNIRIWKAQASRTLGKLNPRERKKLEYNDALKKRYQHLTEVKRIAKHRHVPKAIKKAAAAKQEGKERETKKLANVRKHSKPGKVPLVDIRKKSVIRQV 467
[Close]
BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Match: A0A803QJJ8_CANSA (DDB1- and CUL4-associated factor 13 n=4 Tax=Cannabaceae TaxID=3481 RepID=A0A803QJJ8_CANSA)

HSP 1 Score: 258 bits (658), Expect = 1.620e-76
Identity = 118/215 (54.88%), Postives = 166/215 (77.21%), Query Frame = 1 
Query:   16 SENEIQQVVLQMRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVRRIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKKKVVK 660
            +  E+ +++++ R+N++AWNP EP+N   ANED+N Y++D R L++A  +HKDHVSAVMD+ +SPTG+EF + SYDRTVR+FP   G SRE+YHTKRMQRVF V FS D  +V++GSDDTNLR+WKA ASE+LG ++PRE++K EY++++K RY+H+P+V+RI +HRH+P  I KA   +R   D ERRK + R  HS PG++   P RKK++VK
Sbjct:  235 TSKEVTKIIMRTRTNSIAWNPMEPINFTAANEDSNCYSYDARKLSEAKCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFPFNGGHSREIYHTKRMQRVFSVKFSCDGTYVISGSDDTNLRLWKAKASEQLGVLLPREQKKHEYQEAVKNRYKHLPDVKRIVRHRHLPKPIYKATNLKRTMTDAERRKEERRKAHSTPGSITTQPLRKKRIVK 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13701.2282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH9_ECTSI1.120e-12490.19Sof1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
W1P0N3_AMBTC2.730e-7857.82DDB1- and CUL4-associated factor 13 n=3 Tax=Magnol... [more]
B9RVU4_RICCO5.390e-7857.14DDB1- and CUL4-associated factor 13 n=2 Tax=Ricinu... [more]
A0A0A0K1Y9_CUCSA1.030e-7756.40DDB1- and CUL4-associated factor 13 n=12 Tax=Cucur... [more]
A0A7N0TIW4_KALFE1.060e-7756.87Sof1 domain-containing protein n=1 Tax=Kalanchoe f... [more]
A0A2Z7D023_9LAMI1.090e-7755.92DDB1- and CUL4-associated factor 13 n=1 Tax=Dorcoc... [more]
A0A5A7UV83_CUCME1.860e-7751.24DDB1- and CUL4-associated factor 13 n=2 Tax=Cucumi... [more]
UPI000C1D637B8.450e-7755.92DDB1- and CUL4-associated factor 13 n=1 Tax=Olea e... [more]
A0A024UAB8_9STRA9.020e-7756.36Sof1 domain-containing protein n=11 Tax=Aphanomyce... [more]
A0A803QJJ8_CANSA1.620e-7654.88DDB1- and CUL4-associated factor 13 n=4 Tax=Cannab... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13701contigH-paniculata_contig13701:836..6667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.6
Seed ortholog evalue1.5e-101
Seed eggNOG ortholog2880.D7FIH9
Preferred nameDCAF13
KEGG koko:K11806
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030054,GO:0030331,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035257,GO:0035258,GO:0036211,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051427,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG0268@1,KOG0268@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-28_000340.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04121
Exons5
Model size1623
Cds size624
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.3499599-UTR-H-paniculata_contig13701:835..17861622929088.3499599-UTR-H-paniculata_contig13701:835..1786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13701 836..1786 -
1691480726.7369497-UTR-H-paniculata_contig13701:835..17861691480726.7369497-UTR-H-paniculata_contig13701:835..1786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13701 836..1786 -
1622929088.4153278-UTR-H-paniculata_contig13701:6619..66671622929088.4153278-UTR-H-paniculata_contig13701:6619..6667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13701 6620..6667 -
1691480726.8031807-UTR-H-paniculata_contig13701:6619..66671691480726.8031807-UTR-H-paniculata_contig13701:6619..6667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13701 6620..6667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.360113-CDS-H-paniculata_contig13701:1786..18731622929088.360113-CDS-H-paniculata_contig13701:1786..1873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 1787..1873 -
1691480726.7507586-CDS-H-paniculata_contig13701:1786..18731691480726.7507586-CDS-H-paniculata_contig13701:1786..1873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 1787..1873 -
1622929088.3753457-CDS-H-paniculata_contig13701:3368..34801622929088.3753457-CDS-H-paniculata_contig13701:3368..3480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 3369..3480 -
1691480726.7585244-CDS-H-paniculata_contig13701:3368..34801691480726.7585244-CDS-H-paniculata_contig13701:3368..3480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 3369..3480 -
1622929088.3849578-CDS-H-paniculata_contig13701:4948..50741622929088.3849578-CDS-H-paniculata_contig13701:4948..5074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 4949..5074 -
1691480726.7689638-CDS-H-paniculata_contig13701:4948..50741691480726.7689638-CDS-H-paniculata_contig13701:4948..5074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 4949..5074 -
1622929088.3955512-CDS-H-paniculata_contig13701:6065..62591622929088.3955512-CDS-H-paniculata_contig13701:6065..6259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 6066..6259 -
1691480726.778835-CDS-H-paniculata_contig13701:6065..62591691480726.778835-CDS-H-paniculata_contig13701:6065..6259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 6066..6259 -
1622929088.4058974-CDS-H-paniculata_contig13701:6514..66191622929088.4058974-CDS-H-paniculata_contig13701:6514..6619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 6515..6619 -
1691480726.7932913-CDS-H-paniculata_contig13701:6514..66191691480726.7932913-CDS-H-paniculata_contig13701:6514..6619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13701 6515..6619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13701.2282.1prot_H-paniculata_contig13701.2282.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13701 1787..6619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13701.2282.1

>prot_H-paniculata_contig13701.2282.1 ID=prot_H-paniculata_contig13701.2282.1|Name=mRNA_H-paniculata_contig13701.2282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MRSNAVAWNPQEPMNLVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDV
SFSPTGQEFASASYDRTVRVFPHRSGRSREVYHTKRMQRVFCVNFSADAR
FVMTGSDDTNLRIWKANASEKLGTMVPREERKLEYRQSLKRRYEHMPEVR
RIAKHRHVPGMIKKAAEAERLQRDKERRKTDNRVKHSKPGTVEMVPERKK
KVVKELT*
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mRNA from alignment at H-paniculata_contig13701:836..6667-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13701.2282.1 ID=mRNA_H-paniculata_contig13701.2282.1|Name=mRNA_H-paniculata_contig13701.2282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5832bp|location=Sequence derived from alignment at H-paniculata_contig13701:836..6667- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTTTTTTTCTATTCTGAAAATGAAATTCAACAGGTTGTCCTCCAGAT
GCGATCAAACGCAGTAGCCTGGAATCCTCAGGAGCCCATGAACTTGGTGT
GCGCCAACGAGGACACGAACTTGTATACGTTCGACTTGAGAAATCTTAAT
CAGGTACAGAGGAAACGGTAGGCGAGTGTTGTGAGAACCTCGTTGCCTCT
TATCATTTTGTGTTCATTATTTAGTATGCACTACTGGAGTTCGATTACAG
TTCATTTGTTTTTTTATGAAGGTGGAGGAACATAGATAGACCAAAACGTT
TTTTGGTTTCCTTGCTTTGTTCCTGACTAAATGCCTCTTTTGTCTTTCCG
TTTGTCTCCAATTCAACCGTCTTGCCTTGGTATTTCTCTCTCTCCTCTCT
TTGGACAGGCGCTGATGATTCACAAGGACCACGTGTCGGCGGTGATGGAC
GTGTCGTTTTCGCCCACTGGGCAAGAGTTCGCCTCCGCTTCGTACGATAG
AACGGTCCGAGTGTTCCCCCACCGTTCAGGCCGCTCTCGAGAGGTCTACC
ACACTAAACGTATGCAACGTGTCTTTTGTGTCAACTTCAGCGCCGACGCG
AGGTAAATAATAAAATAAATGATTGGTATGCGCTTTTGAAAAATACTAAG
ACCTCGATGGTGATCAATTATGAATGATAAAAGGCTCGAGCGGTTTCAGG
GTGAGCATATGCGTATGTCTGTCCACGTTTTTTGCTGGGTTATGTGATAT
GATGTCATGTTTTAAGTACTTTAAACACGCGGGCGAGTGATGCAGTTACG
ACACCTCTTCCCCTCGCACAGTGAGGTTTTCAGGCAATTAAGAGGGATCT
TATGGGAATAACACACATGCTATAGTATAACCAAGTATTTCACAACACCT
CACTGAAACCAAGTAATATCTGGTGCTCCACTAGAAGCAAGTAGGGAAGT
TTTCCTCGTTTGTGTGAGTGTTTTTTCTCTGCGAGACGAGGATAGAGGGC
AATACCTATATCGATCATCCACTTGATTTTGAATATAAACATGTTGGCCA
ACGGTATCTACATCACTTCATATTGTATTACGTACCCTGCAACGGTGCCG
CGTGGGCTTGCTTTGTCCTAATCAATTATTACTTACTAGTTGCGTAGGTG
TTAGTTATTGCTAATTACTTATTACTTATGCAGTATATAATGCACGTAAT
GAGGTCGTCGTCGTTCCGGAACATATTTTGTAGTGTGTAACTCAACTGAA
TGGTCTTGGTACGTTACGAGTGTCAGCGTGGTGTGTAGGTAGACTTCAAA
ACACCTACTACACGACACGGGTCAGCATCGCCAATGCCCATACTCTATCT
AGTACTAAATTACTCTGATTTTCATGTTTTAAGGGGCATGTATTAAATAT
TGCTGGCACATGATCACCTTATTACTTGTACAGTTTATGCTGTTTGCCTT
CGTTTTGTGAGCTATTGTGCAGATCGCATTGAGGACGGTATGTACACACG
ACCGAGAATCGACGATGACGGATGAACCGAGATACACGCTCGTCGTTGGT
ACTGTGTTGTGTTGTGTGTTATCGGCTTTTGTGTTACCGTCAGGTTTGTG
ATGACGGGCAGTGACGATACGAACCTGAGGATATGGAAAGCCAACGCGTC
CGAAAAACTGGGCACGATGGTGCCTCGGGAGGAAAGGAAGTTGGAGTACA
GACAAAGCCTCAAGAGACGGTGGGTTGCTCTTTTGGGTATTATGGCATTA
GGCACGTACGGTACGGTATACCGTTCCCTTGGGTGAAGTCAAACATCAAA
GCTTGAAGGTTGGCTATTTTCATGCGTGTCTAAATATTTATCATGTGCGT
GTCTCTGTTGTTGTCTGAAGTCAACACACAAAAGAGAGTACATTGGATTG
TTTTGGAAAATGTGTAAATGTGTGTATGCTTTTTGTAGAGGTGGTATGGA
GTAGAGCGAAACATAATAAAGGTGTAAATGATGATGAGTTTGGTCCATAC
AACCAAAACGGTGCGACACATATTGAAAACCCGAAGAACACATTGTTTAT
TTTCTTGTTTCAAAAGGAGTGCACCTTTTCAACGGTTCGTTTCTATTAGC
GAGTGTAACCGAAGGAAGGCTGCCTGTTTAGCTATGCGACCGTTAATTTC
AGTCAGGACTAAGTAAACTGTTGATACTGCCATAGTTCGCAAAAATTGGT
CGTCTTGGAACAGTTTACAATATTTGATCCAAGTGGTTCATATGTCGTGT
TGCGTGTAAAAAAGGAGTGAGTGCAAATACGCTGTAGTTCTCGTTAAGAT
AGAAATACCCAGGGAGCTTACACAGGGCGTACGTAAGGTGGTAGCCTCGA
AGCCCTTCCGGCAAAACCGAGGCCGAAGAGATCGGAACGGAAGGTTTCCA
AGTTTTTTTCTCCGGGGTGCGCTGGAAGGCAAGTAAATTTCGATATTTTT
GTAGAAAGGTTTTCGAAGCATACGGGATAGCCATCAATGTCAATGGCCTC
AACCCTAGCGTAGAATTGATTGGCGAGAGCCTAACTGTAGCACAGTGATG
TACCGTGAGTTTACATGGAAATTCAGGTGAGTTACGGCCAAATGTTTTCC
CAGCACTTAAAATTACGGTTCTTTGTAGGCGACAAGCTGACCTTGTGTGT
TGTCTGTCTGTCTTTCTTGTCTTTCTTGTCTTTTCTTTCTACAAAACCTT
CTCCGGGTGGGCGAGATATTTAGGGACCCGATCTCCGCGGCAGAAACTGG
ATATATGATCCTTGTTGAAAAATACAAGGCCACTTAGATTAGCATGATGA
AGTTATACTGCTGATGTCGTGATCATTTTTCTATACCTTATTCAAGGGAT
TTCCGCACGATGGACGTCTGCTGTTTCTCGGAACATTTTTCCATGCTCTA
TCTAAGCTGATATGTCGGAAGCTTTGTTAACCTAATGATGCGGCGCATGT
AGGAACAAATAATAATTTCGCGAATCACACCGACCAAATTATCCTTTTTT
CTGTTCTTTTATTTCCTAAATGAGCAGCATCACCACCACCGCCACCGCTG
CTAACCTGGTACGTGCCGATATTTTGGCAAATTATTTTCTTGTCCAACCA
TTTGATTTCGCAAATGAAAAGATACATTTTGCCCGGACAAATGTCTTTTT
CCGTTGTTTTTTTTTCCACGTACGACCTTTGGGGCAGGTACGAGCACATG
CCCGAGGTCAGGCGCATCGCCAAGCATCGACACGTGCCGGGGATGATAAA
GAAAGCCGCGGAGGCAGAGCGACTGCAGAGAGACAAGGAACGCCGGAAGG
TACGCGTAAACTACTTACAGTACAGTATTATATAAAAGACATGAAACGAG
TGCGATTTACTCTTCCAACCTTTTCCAAGGGTGTTCTATAGCACAAGAGT
TGCAAATAGCCGAACCATAACACAATGGGATCAACCCATCGCCTTGTGGT
CCGTCGTGATTCACCGTACAGACGGTACTGCACAGGCACTGTCTGCACTT
GTCAGGTCCTCGACACATGACTACAAAATCTTTACGGTCAATGCAAACAG
CGTAGTACATTACATGGATCTGTCAGGTCATCGCCAATTCGTTTTTGTAC
TCTCATTCCAATATTACGATCAGTGCGCTCACGCCAGCCGAAGTCACGCT
ATCCAAGTGTATGAACCGTGAGCCTGGCTCTCTCTTCGCCTGTCGCGCGC
CAAACCAGACGTTCACTCAACTTGGCGTTGCTGCGGCAACTCTTGTAGTG
CCTCCAGCATTTGCAATAAATCAGGGCAGAGCATGGTCGTTTACCAATCG
AAATTCCGTATTTCTATATGGTTGACAGGAATGCTTATGGCGGCGCTTCC
GCCCAATTTCAAATGTTCCTAAATGCAAGGTGGCCTCTATGGCACCTGGA
TCCTCTCTGCAAGCAGCAAACAAGCTCTATTAGCCGCAATATTGCACTCG
AGGCAGGCATAGGCCGCTCACTAGCAACGAAGGTTGCTCCACCACTTGGG
GTCCCGACTTGTTGATAAAATAGAGACGACACAATCTGCTGTACGTTCAA
ATAATGGTGTGCTTTAATACAGTCCCCATCAAGGAAGTGGATACAGAGGT
CTCACGATGCTAGTAGCAGTGCAGTACGAAGAAGAAAAACAAACAGCTTG
CTGACAAACACAATACAGCCGAGATAATTTGAGGTTTTTCAACTTTTTCA
ACTGTTTTGGGGTTCATTTTCTGAATTTTCTCCTCCGACGACCATGGGGA
AGGGACGAGGCGGGTATCCAAAAATTTAGAGCACGGCACCCCTCGGTCAT
TCGATACCGAACTGTCGGAGAATCCGAATTTTTCGTGTGGTGAAAACGTG
AAAGTTGATACTGACTAAATATTATGACTAGCAAAATAGTGGATTGATCA
TGACTGAGAGAATCGCGAGGTCAAACAACTGTGGATATATTGGATAAATG
ATTTTCGTCTTGAGGATGAAATATATGCTCAAGATCTCAAGATTCAGTGT
CATTGTCCAACCCCAAAATATCGTTGAAAGTAGATGCGTTCGTTCGATAG
CTTGTTGCTGAGTGAAAAAATATTCAAGGTGGTGATTTTTTTGTTCGCAG
TTGGATATACCGCTCAAGTTGACACCGAAAAACGTTTGAGGTAAAAACCA
AAATGACCCTTCTCTATCCAAACTCATCAAGAATAGGATCATAATTGGCT
CATGTGTGCCCTTGTGGCTCATATCCTGTCGTTTCTCGTCCTCCTATACG
TGTGCGTATTGTCGTGAAACTTATATTCGTTTCGGACCGAACAGACGGAC
AACCGCGTCAAGCACAGCAAGCCTGGGACAGTGGAGATGGTACCCGAACG
AAAGAAGAAGGTGGTCAAGGAGCTCACGTGATTGATTGTCGTCAATCTCA
ATATATCATTGCCATCATCATCATCATGTTACTGTCAGTCGAGAGCACGC
TCGTAGTTCGCCGTTATTTCCTGCACAGGGCATCGGCCACGAGGATAGAT
GGTTCGTTCTTGGTTTCCCCCCAGAAATGTTGTGGCCGTCTCGATGCAAG
CAGTGTTGTTGGCGCCCCAGAAGCTGTATTGGACGTTGCCATGTCGACTA
CTTCGGTGAATGTGGTTGTAGAGCATGCACTAGCGGTTGGTCAGGGATAA
TCTTGGTGACCAGTCAAGTGATTGATGTTAGCAGTACCGTATGCATACCA
TCGTGTATGTATGATGTGAATCTGTGCCATACGATAGTGTGGCTCGCTGC
TGTCCCATACAGCAGTAATGGTAACCGAGGGGGATCTTGTTTCGATTTGG
TCCTTTTCAAGGAGGGAGGACGAAGCGAGGAGGGGGAGGAGATGAGAGGC
AATTAGAAATGATAAACACGCCACGTAATGTTGTTCGGAAGACTCGAAGA
CGACGACAAGAAGGGAGAGAAATGCGTTCTTACATACGTACGGGTCCTGT
GTTCTAATAGTTGATAGTTGCTCTCTCCCTCTCGTATATTCATGCGTATG
CTTGGTCCCCAAGCAAAGAAGCCCTACGCAACTCAATAAAACACATGGCA
AATACGGTGCAGGCTTCGTGACTTATTTCATCATCGAGGGTCATAGATGT
GTTGTGTGCATGTATGTGGCCAGTCGTGACCTTTGTTAGAACACGACGAG
ATGATACAGGACGAGATAGATAGGACGGGAAGTGATCTAGTTCAGTAGCA
TACCGGTAAACAGCCGATCCTCGAGATTGAGGATGAAACAGTTTTTGGTC
ATTTTACCAAGTACAATTGCTGAACCATGGTAAAACGGTCCAAGACTGCT
TGAAAATGCATGGTGTCAGTGTTGACGGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig13701:836..6667-

>mRNA_H-paniculata_contig13701.2282.1 ID=mRNA_H-paniculata_contig13701.2282.1|Name=mRNA_H-paniculata_contig13701.2282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig13701:836..6667- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATCAAACGCAGTAGCCTGGAATCCTCAGGAGCCCATGAACTTGGT
GTGCGCCAACGAGGACACGAACTTGTATACGTTCGACTTGAGAAATCTTA
ATCAGATGCGATCAAACGCAGTAGCCTGGAATCCTCAGGAGCCCATGAAC
TTGGTGTGCGCCAACGAGGACACGAACTTGTATACGTTCGACTTGAGAAA
TCTTAATCAGGCGCTGATGATTCACAAGGACCACGTGTCGGCGGTGATGG
ACGTGTCGTTTTCGCCCACTGGGCAAGAGTTCGCCTCCGCTTCGTACGAT
AGAACGGTCCGAGTGTTCCCCCACCGTTCAGGCCGCTCTCGAGAGGTCTA
CCACACTAAACGTATGCAACGTGTCTTTTGTGTCAACTTCAGCGCCGACG
CGAGGCGCTGATGATTCACAAGGACCACGTGTCGGCGGTGATGGACGTGT
CGTTTTCGCCCACTGGGCAAGAGTTCGCCTCCGCTTCGTACGATAGAACG
GTCCGAGTGTTCCCCCACCGTTCAGGCCGCTCTCGAGAGGTCTACCACAC
TAAACGTATGCAACGTGTCTTTTGTGTCAACTTCAGCGCCGACGCGAGGT
TTGTGATGACGGGCAGTGACGATACGAACCTGAGGATATGGAAAGCCAAC
GCGTCCGAAAAACTGGGCACGATGGTGCCTCGGGAGGAAAGGAAGTTGGA
GTACAGACAAAGCCTCAAGAGACGGTTTGTGATGACGGGCAGTGACGATA
CGAACCTGAGGATATGGAAAGCCAACGCGTCCGAAAAACTGGGCACGATG
GTGCCTCGGGAGGAAAGGAAGTTGGAGTACAGACAAAGCCTCAAGAGACG
GTACGAGCACATGCCCGAGGTCAGGCGCATCGCCAAGCATCGACACGTGC
CGGGGATGATAAAGAAAGCCGCGGAGGCAGAGCGACTGCAGAGAGACAAG
GAACGCCGGAAGGTACGAGCACATGCCCGAGGTCAGGCGCATCGCCAAGC
ATCGACACGTGCCGGGGATGATAAAGAAAGCCGCGGAGGCAGAGCGACTG
CAGAGAGACAAGGAACGCCGGAAGACGGACAACCGCGTCAAGCACAGCAA
GCCTGGGACAGTGGAGATGGTACCCGAACGAAAGAAGAAGGTGGTCAAGG
AGCTCACGTGAACGGACAACCGCGTCAAGCACAGCAAGCCTGGGACAGTG
GAGATGGTACCCGAACGAAAGAAGAAGGTGGTCAAGGAGCTCACGTGA
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