mRNA_H-paniculata_contig137.2279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig137.2279.1
Unique NamemRNA_H-paniculata_contig137.2279.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig137.2279.1 vs. uniprot
Match: A0A6H5K0J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J1_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 7.180e-47
Identity = 135/263 (51.33%), Postives = 152/263 (57.79%), Query Frame = 1 
Query:   31 SAGGRSEAFGISGG---------GVRGAPVSFS--RAPRGQ-GRPPPVPGHLSASTAAMLRSSPGNIASLAELDSYLEHHHRRLVEQVEGGVLTDDVEAEIKASRHQ-RQGTRSHQGLGTTDGSSNGLGSSSSSSGVPRTVGARVSTAPFFHSTLSADGDHPNNHXXXXXRDWNGRGRDGGRQGLK--------------------------GDHPLSSNGVDNGEWDPPQKRGP-YKRERGEPCEDSGDGGWGIHLRGFRGG 699
            +AGGR EAFG+SG              +PVS++  R  RGQ GRPPPVPGHLSASTAAM RSSPG+IASLAELDSYLEHHHRRLVEQVEG V+ DDVEAEI+ASR Q R+  RSH+      G+ +  GS SS S VPRTVGA V+T  FF STLSADG +  N    XX     RG                                   GD   SS+      WDPP +RGP YKR+R        DGGWG  LRGFRGG
Sbjct:  596 TAGGRLEAFGVSGXXXXXXXXXXSFMSSPVSYTSGRGSRGQQGRPPPVPGHLSASTAAMRRSSPGSIASLAELDSYLEHHHRRLVEQVEG-VVADDVEAEIEASRQQHRRNPRSHRSFEAGGGTRSHNGSCSSGSSVPRTVGAGVTTKCFFDSTLSADGYNDYNAGDDXXXXXXFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDQRTSSSRG----WDPPNQRGPGYKRDRDRA---EADGGWGATLRGFRGG 850
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BLAST of mRNA_H-paniculata_contig137.2279.1 vs. uniprot
Match: D8LF04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF04_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 9.460e-17
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:  103 RAPRGQ-GRPPPVPGHLSASTAAMLRSSPGNIASLAELDSYLEHHHRRLVEQ 255
            R  RGQ GRPPPVPGHLSASTAAM RSSPG+IASLAELDSYLEHHHRRLVEQ
Sbjct:  427 RGSRGQQGRPPPVPGHLSASTAAMRRSSPGSIASLAELDSYLEHHHRRLVEQ 478
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig137.2279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0J1_9PHAE7.180e-4751.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF04_ECTSI9.460e-1790.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig137contigH-paniculata_contig137:20143..22417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size720
Cds size720
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.0843606-CDS-H-paniculata_contig137:20142..206071622929087.0843606-CDS-H-paniculata_contig137:20142..20607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 20143..20607 -
1691480726.2076898-CDS-H-paniculata_contig137:20142..206071691480726.2076898-CDS-H-paniculata_contig137:20142..20607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 20143..20607 -
1622929087.100011-CDS-H-paniculata_contig137:22162..224171622929087.100011-CDS-H-paniculata_contig137:22162..22417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 22163..22417 -
1691480726.220228-CDS-H-paniculata_contig137:22162..224171691480726.220228-CDS-H-paniculata_contig137:22162..22417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig137 22163..22417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig137.2279.1prot_H-paniculata_contig137.2279.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig137 20143..22417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig137.2279.1

>prot_H-paniculata_contig137.2279.1 ID=prot_H-paniculata_contig137.2279.1|Name=mRNA_H-paniculata_contig137.2279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=240bp
RHGGGEGQSPSAGGRSEAFGISGGGVRGAPVSFSRAPRGQGRPPPVPGHL
SASTAAMLRSSPGNIASLAELDSYLEHHHRRLVEQVEGGVLTDDVEAEIK
ASRHQRQGTRSHQGLGTTDGSSNGLGSSSSSSGVPRTVGARVSTAPFFHS
TLSADGDHPNNHHNHHHRDWNGRGRDGGRQGLKGDHPLSSNGVDNGEWDP
PQKRGPYKRERGEPCEDSGDGGWGIHLRGFRGGGSDRGGG
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mRNA from alignment at H-paniculata_contig137:20143..22417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig137.2279.1 ID=mRNA_H-paniculata_contig137.2279.1|Name=mRNA_H-paniculata_contig137.2279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2275bp|location=Sequence derived from alignment at H-paniculata_contig137:20143..22417- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCACGGCGGGGGAGAGGGGCAATCACCTTCGGCTGGGGGTAGATCTGA
GGCGTTTGGGATATCCGGGGGCGGCGTTCGGGGCGCCCCTGTTTCGTTTT
CACGTGCTCCTCGGGGGCAAGGGAGGCCGCCGCCGGTGCCAGGCCACTTG
TCGGCATCGACGGCGGCCATGCTACGCAGTTCTCCGGGGAACATTGCCAG
TCTGGCGGAGCTGGACAGTTACCTGGAGCATCATCATCGACGGCTTGTGG
AACAGGTGGGTTGTATACTGTACATCGCTGAGCTTTATTCGGGATGATGA
GTAGGTTGTTTCTTTGCTTGCATTTGTAGCAGGAAACGGGTTTTGCCCGG
CGTTCGCTGGATCGTAGGTCGGGGTCGGGGCGCCTTGGAAATCCGAAGGC
CGCAAGCTGCAGTAGATCGCGATTTCACGTGCGGGGGCGTGCTTAGTCTC
TATGGACGTGTTTGGTGCAGCGAGCACAGCCGATTGGGAGAAGGGCCCCG
CATCGCCGTCCTTGGAAAGTATGAAGCTGCAGGCCGTTACTTGCGTACCG
TTCGATGTTTCAATCGTCACCAGTTTGTATACTTACCTTGAGCCTGGAGT
ACACCCATTCATGATTAGAGAGGCACCTAGCCCACTCCGATTGCTTCTTT
ATTTTGTTTTATTAGAATTATATACCAGCATATTTTTGCGGTTGATCTCT
AACGAAAAAGCAAAACGATTGACTTTATAAACACCTAAACACATGTCGTG
GAGAAACATGTATTCAGCTGTTTATTTCGATGACGTGCTGCCCCTGTCCC
CTTCACGGTCACGGCAGCTCGCCGTCCGCGAGGTAAGTCCAAGCCTTATC
GAACGCCTCTTTTATGGTGTGTAACCGCCCTCTCCATTATCCTCGCCCAT
TGCGCGGATTGCGTCTTTTCAAACCTTGAAAAGTGAAGAGACTTTGTCAT
CTCTCTTCCGAGTAGGCGTCGCACTTCTCATACTCGCTGGAAAAAGTCAT
CCCCCACACCGCACCCTTGCAAGAGGCAAACAAGCGCCAAGTCGTTGTTT
GTAGAATCGGGTGACTGAGAAGGCTGAGCTACCTTCAAAATTTGGAGTTT
TTTCGACCAAACGTTTTTTTTCGCGACGTGTCTTCTGCTCTTGAAAGTGT
CGTGTTTTACTCTTACCTTTTGGGGGATATACTCCAAAACCATGTATAAA
GCATTATTATATAATCAAGTGAAAATTGAAGGTGGTCAAGGGCCTCTCTA
ATCGTAAGTTTATTCACAGGACAAGAGGAAGTAGTCCTGTTAACTGTACG
TGCAAGCCACTCCTTGGGACATGGCATTATTTGCTATGGTTACAAAGACT
AGACGAGTCTGTGCGACCCAATATTGGAGGTTAGAAATCTGAACGTATCA
AATACGTAACGGAGGAACGACGGAGCATCAGAGCGAAGCTATCTGAGAGT
CAAAACTTTGAACATCTTTCTTCACCAATCATGTGCAGTAAGTACACGAA
GTATTGCCAAGTCGCTGAGAGAGCTTGATGGTTGGTAGCTTTTTATTTTC
GATTCGTATGTATGTAAGTACCATAAATAGCTTCTGCATTACAGATCCTA
AATTTCTAATGGGTTTGTTCAAAATTGACCTAATAGATTACCAAATGTAC
TTGGTAGTTCCGAGCCACGATGAATACATTTAAAAACAGAATCAACATGT
GAAATGGACATCGACTAACCCCCGGCTCAGTCCCCTCAATCCTCAATTAA
TCAATCGTTTGATCGATGGATGAATTGGTCCTGTTCCTCTTTTCCTCTTT
TCCTATTTAGGTGGAAGGAGGAGTCCTCACAGACGACGTGGAAGCCGAGA
TCAAAGCCAGCCGTCACCAACGGCAAGGCACACGATCTCACCAGGGCCTC
GGCACTACCGACGGCTCGAGCAACGGCCTCGGTAGCAGCAGCTCCAGCAG
CGGCGTGCCTCGAACAGTAGGAGCGCGTGTGTCTACCGCGCCCTTCTTCC
ACTCCACCCTCTCGGCAGACGGAGACCACCCCAACAACCATCACAACCAC
CATCACCGCGATTGGAACGGTCGGGGTCGAGATGGCGGGCGCCAGGGCCT
CAAAGGAGACCACCCTCTCAGCAGCAACGGGGTCGACAATGGAGAATGGG
ACCCGCCGCAAAAACGAGGGCCGTATAAACGCGAACGAGGCGAGCCGTGT
GAGGACAGCGGAGACGGTGGGTGGGGCATACACTTGCGTGGGTTCCGGGG
TGGGGGTTCAGACCGCGGCGGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig137:20143..22417-

>mRNA_H-paniculata_contig137.2279.1 ID=mRNA_H-paniculata_contig137.2279.1|Name=mRNA_H-paniculata_contig137.2279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at H-paniculata_contig137:20143..22417- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCACGGCGGGGGAGAGGGGCAATCACCTTCGGCTGGGGGTAGATCTGA
GGCGTTTGGGATATCCGGGGGCGGCGTTCGGGGCGCCCCTGTTTCGTTTT
CACGTGCTCCTCGGGGGCAAGGGAGGCCGCCGCCGGTGCCAGGCCACTTG
TCGGCATCGACGGCGGCCATGCTACGCAGTTCTCCGGGGAACATTGCCAG
TCTGGCGGAGCTGGACAGTTACCTGGAGCATCATCATCGACGGCTTGTGG
AACAGCGGCACGGCGGGGGAGAGGGGCAATCACCTTCGGCTGGGGGTAGA
TCTGAGGCGTTTGGGATATCCGGGGGCGGCGTTCGGGGCGCCCCTGTTTC
GTTTTCACGTGCTCCTCGGGGGCAAGGGAGGCCGCCGCCGGTGCCAGGCC
ACTTGTCGGCATCGACGGCGGCCATGCTACGCAGTTCTCCGGGGAACATT
GCCAGTCTGGCGGAGCTGGACAGTTACCTGGAGCATCATCATCGACGGCT
TGTGGAACAGGTGGAAGGAGGAGTCCTCACAGACGACGTGGAAGCCGAGA
TCAAAGCCAGCCGTCACCAACGGCAAGGCACACGATCTCACCAGGGCCTC
GGCACTACCGACGGCTCGAGCAACGGCCTCGGTAGCAGCAGCTCCAGCAG
CGGCGTGCCTCGAACAGTAGGAGCGCGTGTGTCTACCGCGCCCTTCTTCC
ACTCCACCCTCTCGGCAGACGGAGACCACCCCAACAACCATCACAACCAC
CATCACCGCGATTGGAACGGTCGGGGTCGAGATGGCGGGCGCCAGGGCCT
CAAAGGAGACCACCCTCTCAGCAGCAACGGGGTCGACAATGGAGAATGGG
ACCCGCCGCAAAAACGAGGGCCGTATAAACGCGAACGAGGCGAGCCGTGT
GAGGACAGCGGAGACGGTGGGTGGGGCATACACTTGCGTGGGTTCCGGGG
TGGGGGTTCAGACCGCGGCGGCGGCGTGGAAGGAGGAGTCCTCACAGACG
ACGTGGAAGCCGAGATCAAAGCCAGCCGTCACCAACGGCAAGGCACACGA
TCTCACCAGGGCCTCGGCACTACCGACGGCTCGAGCAACGGCCTCGGTAG
CAGCAGCTCCAGCAGCGGCGTGCCTCGAACAGTAGGAGCGCGTGTGTCTA
CCGCGCCCTTCTTCCACTCCACCCTCTCGGCAGACGGAGACCACCCCAAC
AACCATCACAACCACCATCACCGCGATTGGAACGGTCGGGGTCGAGATGG
CGGGCGCCAGGGCCTCAAAGGAGACCACCCTCTCAGCAGCAACGGGGTCG
ACAATGGAGAATGGGACCCGCCGCAAAAACGAGGGCCGTATAAACGCGAA
CGAGGCGAGCCGTGTGAGGACAGCGGAGACGGTGGGTGGGGCATACACTT
GCGTGGGTTCCGGGGTGGGGGTTCAGACCGCGGCGGCGGC
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