mRNA_H-paniculata_contig13699.2275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13699.2275.1
Unique NamemRNA_H-paniculata_contig13699.2275.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13699.2275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13699contigH-paniculata_contig13699:3948..4554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size395
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.9803886-CDS-H-paniculata_contig13699:3947..41721622929086.9803886-CDS-H-paniculata_contig13699:3947..4172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13699 3948..4172 +
1691480726.1821992-CDS-H-paniculata_contig13699:3947..41721691480726.1821992-CDS-H-paniculata_contig13699:3947..4172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13699 3948..4172 +
1622929086.9999485-CDS-H-paniculata_contig13699:4385..45531622929086.9999485-CDS-H-paniculata_contig13699:4385..4553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13699 4386..4553 +
1691480726.1978095-CDS-H-paniculata_contig13699:4385..45531691480726.1978095-CDS-H-paniculata_contig13699:4385..4553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13699 4386..4553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13699.2275.1prot_H-paniculata_contig13699.2275.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13699 3948..4553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13699.2275.1

>prot_H-paniculata_contig13699.2275.1 ID=prot_H-paniculata_contig13699.2275.1|Name=mRNA_H-paniculata_contig13699.2275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
LKSFAGLSIPIEEIAGVDDQSWDKAVSSMVEDAAKASIDEACSAEVQILD
KARATGENLEQSALADGCQGVGSSNASRLPSQRNATETLEKFVQQLNEEG
HKRSSPSRPFLCFYTTMRLVDKAGEGIDWSW
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mRNA from alignment at H-paniculata_contig13699:3948..4554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13699.2275.1 ID=mRNA_H-paniculata_contig13699.2275.1|Name=mRNA_H-paniculata_contig13699.2275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=607bp|location=Sequence derived from alignment at H-paniculata_contig13699:3948..4554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAGAGCTTCGCAGGGTTAAGCATTCCCATTGAGGAGATCGCAGGTGT
GGATGATCAATCGTGGGACAAAGCGGTCTCATCGATGGTGGAGGACGCAG
CAAAAGCATCGATAGACGAAGCTTGTTCTGCTGAGGTACAGATCCTCGAC
AAAGCACGTGCGACCGGGGAAAATCTGGAACAGAGTGCCCTCGCGGATGG
TTGTCAAGGCGTGGGCAGTTCGAATGTAAGTGACACTGTGTGCAATGAGT
GTTGCACGCAGTGATCGCCCATGCAGCGAAACAAATGCTTCCCCCGATAC
AATAGTAGTAACTTGACGCACTCGGCGGTAACTCCAGCTGCAGGTAAGAC
ACATTTGCACCATCACACTGTGTCTTTACGCTACCCCAACTACCTTGCGC
CTCTGACCACAACTTTGGTGTAATCAATGCCCTCTTAGGCTAGCCGACTA
CCCTCGCAGAGGAATGCAACGGAGACGTTGGAGAAATTTGTACAGCAACT
AAACGAGGAAGGGCACAAAAGGAGCAGCCCCAGCCGCCCGTTTTTGTGCT
TCTACACCACAATGCGATTAGTTGATAAAGCGGGAGAAGGAATTGATTGG
TCGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13699:3948..4554+

>mRNA_H-paniculata_contig13699.2275.1 ID=mRNA_H-paniculata_contig13699.2275.1|Name=mRNA_H-paniculata_contig13699.2275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig13699:3948..4554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAGAGCTTCGCAGGGTTAAGCATTCCCATTGAGGAGATCGCAGGTGT
GGATGATCAATCGTGGGACAAAGCGGTCTCATCGATGGTGGAGGACGCAG
CAAAAGCATCGATAGACGAAGCTTGTTCTGCTGAGGTACAGATCCTCGAC
AAAGCACGTGCGACCGGGGAAAATCTGGAACAGAGTGCCCTCGCGGATGG
TTGTCAAGGCGTGGGCAGTTCGAATCTGAAGAGCTTCGCAGGGTTAAGCA
TTCCCATTGAGGAGATCGCAGGTGTGGATGATCAATCGTGGGACAAAGCG
GTCTCATCGATGGTGGAGGACGCAGCAAAAGCATCGATAGACGAAGCTTG
TTCTGCTGAGGTACAGATCCTCGACAAAGCACGTGCGACCGGGGAAAATC
TGGAACAGAGTGCCCTCGCGGATGGTTGTCAAGGCGTGGGCAGTTCGAAT
GCTAGCCGACTACCCTCGCAGAGGAATGCAACGGAGACGTTGGAGAAATT
TGTACAGCAACTAAACGAGGAAGGGCACAAAAGGAGCAGCCCCAGCCGCC
CGTTTTTGTGCTTCTACACCACAATGCGATTAGTTGATAAAGCGGGAGAA
GGAATTGATTGGTCGTGGGCTAGCCGACTACCCTCGCAGAGGAATGCAAC
GGAGACGTTGGAGAAATTTGTACAGCAACTAAACGAGGAAGGGCACAAAA
GGAGCAGCCCCAGCCGCCCGTTTTTGTGCTTCTACACCACAATGCGATTA
GTTGATAAAGCGGGAGAAGGAATTGATTGGTCGTGG
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