prot_H-paniculata_contig1369.2271.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1369.2271.1
Unique Nameprot_H-paniculata_contig1369.2271.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length578
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1369.2271.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 167..200
e-value: 1.0E-8
score: 32.8
coord: 377..411
e-value: 6.0E-6
score: 24.1
coord: 308..340
e-value: 1.9E-4
score: 19.4
coord: 342..375
e-value: 1.2E-7
score: 29.5
coord: 132..166
e-value: 1.2E-5
score: 23.1
coord: 203..236
e-value: 3.5E-6
score: 24.8
coord: 238..271
e-value: 2.1E-7
score: 28.7
coord: 482..508
e-value: 1.7E-4
score: 19.5
coord: 447..480
e-value: 7.9E-6
score: 23.7
coord: 272..305
e-value: 1.3E-7
score: 29.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 133..162
e-value: 1.4E-4
score: 21.9
coord: 238..267
e-value: 8.9E-5
score: 22.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 467..528
e-value: 5.4E-8
score: 32.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 164..211
e-value: 2.7E-11
score: 43.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 480..514
score: 10.72
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 235..269
score: 12.068
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 410..444
score: 9.909
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 200..234
score: 10.183
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 445..479
score: 10.611
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 11.762
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 10.337
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 130..164
score: 11.181
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..199
score: 12.836
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 270..304
score: 12.737
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 305..339
score: 10.391
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 515..549
score: 9.701
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 424..576
e-value: 1.0E-35
score: 125.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 91..211
e-value: 3.9E-29
score: 103.3
coord: 212..318
e-value: 8.6E-32
score: 111.9
coord: 319..423
e-value: 1.2E-28
score: 101.6
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 274..437
e-value: 2.7E-12
score: 46.5
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 108..262
coord: 259..408
coord: 393..562
coord: 160..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1369contigH-paniculata_contig1369:7173..8906 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1369.2271.1mRNA_H-paniculata_contig1369.2271.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1369 6723..12098 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1369.2271.1 ID=prot_H-paniculata_contig1369.2271.1|Name=mRNA_H-paniculata_contig1369.2271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=578bp
MVLRCASIAAGASINIAKRPWCTASGAVVARLSKVGLSSTAKETSRPSIN
DRQRRRGITGGHGGDRSGYRHVTRSGGEVGQAAGPSGDIMTIRKFYMDRL
KQARLQRDWNIAKQIFEEALARDDARLVMNSYVYNSVIDAAAKCGKWKAA
VGMLKFMRIKGVNPDVVSYNSAVKACGDGGQWEKALSLLKEMQTEGIAPN
DRSYTSAIKACGYGGKSEHALSLLKEMQVAGIIPDAMCYNSTINACGEGG
QWDRALLLLEEMRTAGVVPDVVSYNSAIKACGDGGQWQQSLSLLREMRRE
GISPDNRSYNSAITACGNGDQWEQSLLLLAEMRAEGVAPTVVVFTSVIKA
CGDGGQWEQAISLLREMEAEGIAPNHITYDSVIRACGDGGQWKQSLSLLK
EMRTKDIVLNVMNYNSAMKACRESGRWEQVLPLLREMQVEGIASNLVSYT
SAIVACGDGGRWQQAWSLLKEMETEGIVSDVVSYNAAIKACGDAGQWERS
LALLREMQMGYVTPDMVSYNLAITACGKGDEPRQAVAILREMNGEGVPAA
DTRTYNATIFAFWRGAHSSQHKVEQTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long