prot_H-paniculata_contig13672.2260.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig13672.2260.1
Unique Name	prot_H-paniculata_contig13672.2260.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	97

Homology

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BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.240e-29
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 0

Query:    5 LEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETYT 97
            LEYASTNTPQQ+  ++R GRT AAMVRC+L DSGLP+FLW +LM  A  L  R PH+A+G  +PYK L G + +L  LR +GARAFVH+ET+T
Sbjct:   83 LEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLRAIGARAFVHVETHT 175

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BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 6.260e-29
Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 0

Query:    3 VSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETYT 97
            V LEYASTNTPQQI  ++R GRT AAMVRC+L DSGLPKFLW  LM  A  L  R PH+A+G  +PYK L   + +L  LR +GARAFVH+ET+T
Sbjct:  354 VKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLRAIGARAFVHVETHT 448

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BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.980e-26
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 0

Query:    3 VSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 96
            + LEYA+TNTPQQI  S+R G+T A + RC+L D   P  +W +LM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:   36 IKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 129

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BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.500e-25
Identity = 51/94 (54.26%), Postives = 64/94 (68.09%), Query Frame = 0

Query:    3 VSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 96
            + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W E+M  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:  147 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 240

[Close]

BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.780e-25
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 0

Query:    3 VSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 96
            + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERY 286

[Close]

BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.750e-25
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 0

Query:    3 VSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 96
            + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:   59 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 152

[Close]

BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.770e-25
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 0

Query:    3 VSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 96
            + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 286

[Close]

BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.910e-25
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 0

Query:    3 VSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 96
            + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 286

[Close]

BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.930e-25
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 0

Query:    3 VSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 96
            + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 286

[Close]

BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.140e-24
Identity = 52/94 (55.32%), Postives = 63/94 (67.02%), Query Frame = 0

Query:    3 VSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 96
            + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L    PDL  LRV+GARAFVH E Y
Sbjct:  517 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSPDLSGLRVIGARAFVHHERY 610

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L6R7_9PHAE	2.240e-29	61.29	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JWF9_9PHAE	6.260e-29	62.11	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KQ40_9PHAE	7.980e-26	54.26	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KF63_9PHAE	3.500e-25	54.26	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JRJ1_9PHAE	4.780e-25	55.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K5H2_9PHAE	6.750e-25	55.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K500_9PHAE	8.770e-25	55.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	8.910e-25	55.32	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	8.930e-25	55.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVF6_9PHAE	1.140e-24	55.32	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..90 e-value: 5.5E-8 score: 34.2
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig13672	contig	H-paniculata_contig13672:4386..4676 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig13672.2260.1	mRNA_H-paniculata_contig13672.2260.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig13672 3955..4676 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig13672.2260.1 ID=prot_H-paniculata_contig13672.2260.1|Name=mRNA_H-paniculata_contig13672.2260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFM
AEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETYT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf