mRNA_H-paniculata_contig13672.2260.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13672.2260.1
Unique NamemRNA_H-paniculata_contig13672.2260.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.420e-53
Identity = 92/200 (46.00%), Postives = 130/200 (65.00%), Query Frame = 3 
Query:  120 KSHQLAHPKTADHKVKYPFQLVFTDLTGPITPAALGGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 719
            KS Q  HPKTA H    P Q V+TDL GPI+P A GGY YVSK +DE+++   +YL+RSKD+A +T   F+Q +V+P+GFR+E LR+  GGEY  + + D+C  + +  E+ +  TPQQ  +S+R GRT   +VRC++    LP+FLW EL      +  R PH  +  ++PY  + G +  LR LRV+G+ AFVH+ETY
Sbjct:   28 KSTQKKHPKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSTAFVHLETY 227
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 5.890e-53
Identity = 95/174 (54.60%), Postives = 125/174 (71.84%), Query Frame = 3 
Query:  201 GPITPAALGGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETYT 722
            GPI+  ALGG++YV+K+ DE TK  E +L+++K DA    Q F QS+VVP+ FR++ LR  KG E   + F +YCLQ+   LEYASTNTPQQ+  ++R GRT AAMVRC+L DSGLP+FLW +LM  A  L  R PH+A+G  +PYK L G + +L  LR +GARAFVH+ET+T
Sbjct:    2 GPISLPALGGFRYVNKLVDEKTKWKETFLMKTKRDAIKALQLFNQSLVVPTRFRLDCLRGDKGTECTCREFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLRAIGARAFVHVETHT 175
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 6.420e-53
Identity = 95/191 (49.74%), Postives = 119/191 (62.30%), Query Frame = 3 
Query:  117 GKSHQLAHPKTADHKVKYPFQLVFTDLTGPITPAALGGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVG 689
            G S Q  HPK A +    PFQLV TDL GP +P ALGG+ Y+ K  D+H K  E++L++ K       Q F QSV+ P   R+E +RA KGGEY   AF  YC  + + L +ASTNTPQ+I  ++R+GRT A MVRC+LADSGLP FLW EL   A  L  RSPHSA    +P+K L+G E  L  L  +G
Sbjct:  307 GNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNRSPHSASDNVTPFKALHGKEAYLGHLWAIG 497
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.020e-50
Identity = 90/200 (45.00%), Postives = 130/200 (65.00%), Query Frame = 3 
Query:  120 KSHQLAHPKTADHKVKYPFQLVFTDLTGPITPAALGGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 719
            KS Q  HPKTA H    P Q V+TDL GPI+P A GG+ YVSK +DE+++   +YL+R+KD+A  T + F+  +V+P+GFR+E LR+  GGEY  + +T +C  + +  E+ +  TPQQ  +S+R GRT   +VRC+L    LP++LW EL   A  +  R PH  +  ++PY  + G +  LR LRV+G+ AFVH+ETY
Sbjct:  510 KSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYLWGELCCTAVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSSAFVHVETY 709
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 4.600e-50
Identity = 94/203 (46.31%), Postives = 119/203 (58.62%), Query Frame = 3 
Query:  120 KSHQLAHPKTADHKVKYPFQLVFTDLTGPITPAAL---GGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 719
            K  Q  HPK +  ++  P QLV  D  GP+ P A    G + Y  KI+D++TK  E+YLLR K D      ++   V    G+R+E +R  KGGE  G  F DYC    + LEYA+TNTPQQI  S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:  460 KHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 662
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 4.650e-50
Identity = 93/203 (45.81%), Postives = 119/203 (58.62%), Query Frame = 3 
Query:  120 KSHQLAHPKTADHKVKYPFQLVFTDLTGPITPAAL---GGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 719
            K  Q  HPK +  ++  P QLV  D  GP+ P A    G + Y  K++D++TK  E+YLLR K D      ++   V    G+R+E +R  KGGE  G  F DYC    + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L    PDL  LRV+GARAFVH E Y
Sbjct:  408 KHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSPDLSGLRVIGARAFVHHERY 610
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.060e-49
Identity = 94/203 (46.31%), Postives = 120/203 (59.11%), Query Frame = 3 
Query:  120 KSHQLAHPKTADHKVKYPFQLVFTDLTGPITPAAL---GGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 719
            K  Q  HPK +  ++  P QLV  D  GP+ P A    G + Y  KI+D++TK  E+YLLR K D      ++   V    G+R+E +R  KGGE  G  F DYC    + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:   84 KHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 286
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.880e-49
Identity = 94/203 (46.31%), Postives = 120/203 (59.11%), Query Frame = 3 
Query:  120 KSHQLAHPKTADHKVKYPFQLVFTDLTGPITPAAL---GGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 719
            K  Q  HPK +  ++  P QLV  D  GP+ P A    G + Y  KI+D++TK  E+YLLR K D      ++   V    G+R+E +R  KGGE  G  F DYC    + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:   84 KHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 286
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.980e-49
Identity = 94/203 (46.31%), Postives = 120/203 (59.11%), Query Frame = 3 
Query:  120 KSHQLAHPKTADHKVKYPFQLVFTDLTGPITPAAL---GGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 719
            K  Q  HPK +  ++  P QLV  D  GP+ P A    G + Y  KI+D++TK  E+YLLR K D      ++   V    G+R+E +R  KGGE  G  F DYC    + LEYA+TNTPQQI +S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:   84 KHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 286
[Close]
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 5.630e-49
Identity = 94/203 (46.31%), Postives = 119/203 (58.62%), Query Frame = 3 
Query:  120 KSHQLAHPKTADHKVKYPFQLVFTDLTGPITPAAL---GGYKYVSKISDEHTK*TEIYLLRSKDDAFSTFQSFVQSVVVPSGFRVEWLRAVKGGEYIGKAFTDYCLQMRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFMAEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETY 719
            K  Q  HPK +  ++  P QLV  D  GP+ P A    G + Y  KI+D++TK  E+YLLR K D      ++   V    G+R+E +R  KGGE  G  F DYC    + LEYA+TNTPQQI  S+R G+T A + RC+L D   P  +W ELM  A  L  RSPHSA+G  +PY  L+   PDL  LRV+GARAFVH E Y
Sbjct:   84 KHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERY 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13672.2260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCZ9_9PHAE1.420e-5346.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L6R7_9PHAE5.890e-5354.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1J1_9PHAE6.420e-5349.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY84_9PHAE1.020e-5045.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE4.600e-5046.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF6_9PHAE4.650e-5045.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE1.060e-4946.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE2.880e-4946.31Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE2.980e-4946.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE5.630e-4946.31Integrase catalytic domain-containing protein (Fra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13672contigH-paniculata_contig13672:3955..4676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score65.9
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog7260.FBpp0244144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam:UBN2_2
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,457GT@7147,45YIF@7214,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
Exons1
Model size722
Cds size291
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.864762-UTR-H-paniculata_contig13672:3954..43851622929084.864762-UTR-H-paniculata_contig13672:3954..4385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13672 3955..4385 +
1691480725.2995043-UTR-H-paniculata_contig13672:3954..43851691480725.2995043-UTR-H-paniculata_contig13672:3954..4385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13672 3955..4385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.8804884-CDS-H-paniculata_contig13672:4385..46761622929084.8804884-CDS-H-paniculata_contig13672:4385..4676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13672 4386..4676 +
1691480725.3137362-CDS-H-paniculata_contig13672:4385..46761691480725.3137362-CDS-H-paniculata_contig13672:4385..4676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13672 4386..4676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13672.2260.1prot_H-paniculata_contig13672.2260.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13672 4386..4676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13672.2260.1

>prot_H-paniculata_contig13672.2260.1 ID=prot_H-paniculata_contig13672.2260.1|Name=mRNA_H-paniculata_contig13672.2260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MRVSLEYASTNTPQQIDMSKRVGRTFAAMVRCVLADSGLPKFLWVELMFM
AEILGKRSPHSAIGMQSPYKMLNGTEPDLRLLRVVGARAFVHIETYT
back to top

mRNA from alignment at H-paniculata_contig13672:3955..4676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13672.2260.1 ID=mRNA_H-paniculata_contig13672.2260.1|Name=mRNA_H-paniculata_contig13672.2260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=722bp|location=Sequence derived from alignment at H-paniculata_contig13672:3955..4676+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGCATCCGCGGCTGGGGCATCTCAACCGCAAGAGCTTGACCCTCCT
GAAGATGGTGGAAAACAATGGGGTGAGCTTCCATGGGACCGTGCCAGACT
GCGATGTTTGCGTCGTGGGAAAAGCCACCAGCTCGCCCACCCGAAGACGG
CGGATCACAAGGTAAAATATCCCTTCCAGCTGGTGTTTACAGACCTGACG
GGACCCATCACCCCGGCGGCGCTCGGGGGATACAAGTACGTGAGCAAGAT
CTCTGACGAACATACGAAGTAGACCGAGATTTACCTGCTGAGGTCTAAGG
ACGACGCCTTCAGCACGTTCCAGTCATTCGTGCAATCGGTGGTGGTTCCA
AGTGGTTTCCGCGTCGAGTGGTTACGGGCCGTCAAAGGAGGCGAGTACAT
CGGCAAGGCATTCACGGACTACTGTCTTCAGATGAGGGTGTCGCTCGAGT
ACGCCAGCACCAATACGCCGCAGCAAATAGACATGTCCAAGCGCGTTGGA
AGAACGTTTGCGGCTATGGTTCGGTGCGTGCTCGCCGACAGCGGATTGCC
AAAGTTTCTCTGGGTTGAACTGATGTTCATGGCCGAGATTTTGGGCAAAA
GGTCACCGCACTCTGCGATTGGCATGCAGTCGCCCTACAAGATGCTGAAC
GGAACGGAGCCAGATCTGCGTCTTCTTCGAGTCGTCGGCGCCAGGGCCTT
CGTACACATAGAGACGTACACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13672:3955..4676+

>mRNA_H-paniculata_contig13672.2260.1 ID=mRNA_H-paniculata_contig13672.2260.1|Name=mRNA_H-paniculata_contig13672.2260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig13672:3955..4676+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGTGTCGCTCGAGTACGCCAGCACCAATACGCCGCAGCAAATAGA
CATGTCCAAGCGCGTTGGAAGAACGTTTGCGGCTATGGTTCGGTGCGTGC
TCGCCGACAGCGGATTGCCAAAGTTTCTCTGGGTTGAACTGATGTTCATG
GCCGAGATTTTGGGCAAAAGGTCACCGCACTCTGCGATTGGCATGCAGTC
GCCCTACAAGATGCTGAACGGAACGGAGCCAGATCTGCGTCTTCTTCGAG
TCGTCGGCGCCAGGGCCTTCGTACACATAGAGACGTACACCATGAGGGTG
TCGCTCGAGTACGCCAGCACCAATACGCCGCAGCAAATAGACATGTCCAA
GCGCGTTGGAAGAACGTTTGCGGCTATGGTTCGGTGCGTGCTCGCCGACA
GCGGATTGCCAAAGTTTCTCTGGGTTGAACTGATGTTCATGGCCGAGATT
TTGGGCAAAAGGTCACCGCACTCTGCGATTGGCATGCAGTCGCCCTACAA
GATGCTGAACGGAACGGAGCCAGATCTGCGTCTTCTTCGAGTCGTCGGCG
CCAGGGCCTTCGTACACATAGAGACGTACACC
back to top