mRNA_H-paniculata_contig1366.2249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1366.2249.1 vs. uniprot
Match: D7G8N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N6_ECTSI) HSP 1 Score: 281 bits (719), Expect = 2.490e-89 Identity = 145/266 (54.51%), Postives = 177/266 (66.54%), Query Frame = 1
Query: 403 LIREPKTTYKSFKGVSTKIKSWSMSYTKTRRREGMGSALPYDPSTVSNRYPLPVTRYQRKTP------------KKQVTSFVVNNKPMYEREKIFAFLFHYHSCGTHVKSHVMGNALCDRILLDDRVREKLSESTWTTTALHYGLVYGTFGPMTEPRTPEKQWMAIGMIPTCDSLLAEGANMSALGPQHADKTHWVELDIPFADFLLNARMVLTRVMKKNDIPPDLHEAIFLSCIVHAADHTQLHRVLWGKHFNPDPQG--KPGNW 1158
+IR TY+S G ST IKSWSM YTKTRRR LP V +++ + ++ SFVVN + + RE+++ L HYHS H K H+MGN+L DRIL+DDRV EKLSESTWTTTALH+GL YGT GP+T PR +W +G + T DS++AEG NMS+LG HADK W +L++PFADFLLNAR+VLTRVMKKNDIPPDLHEA+FLSCIVHA+DHT +HR+ WGK FN D KPG W
Sbjct: 1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRP---QPLPGAKELTPTEKQAAVAAAKKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRNERNKWTGLGAVATRDSVVAEGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTRVMKKNDIPPDLHEALFLSCIVHASDHTLIHRIQWGKVFNLDTTNTFKPGTW 263
BLAST of mRNA_H-paniculata_contig1366.2249.1 vs. uniprot
Match: A0A6H5J9N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N5_9PHAE) HSP 1 Score: 232 bits (591), Expect = 3.580e-69 Identity = 137/335 (40.90%), Postives = 188/335 (56.12%), Query Frame = 1
Query: 145 YFVKWILAQLVAIMSLLCWRLPKNDQEIVNIVENTSLIIVLRRDF----EAEKAEKIAFASRKGCDVEGVTPLYETRHYYVDVKRCELDMLIREPKTTYKSFKGVSTKIKSWSMSYTKTRRREGMGSALPYDPSTVSNRYPLPVTRYQRKTPKKQVTSFVVNNKPMYEREKIFAFLFHYHSCGTHVKSHVMGNALCDRILLDDRVREKLSESTWTTTALHYGLVYGTFGPMTEPRTPEKQWMAIGMIPTCDSLLAEGANMSALG-PQHADKTHWVELDIPFADFLLNARMVLTRVMKKNDIPPDLHEAIFLSCIVHAADHTQLHRVLWGKHFNPD 1134
Y+++W LA L+ + S WR P D ++ ++E TSLI +LR +A + E+ A +P+ E R YY+DVK C L+ + R+P +TY+ GV IK WSMSYTKTR G S T + + + + SF+VN K + + +FL Y +C +H K HV+GN+L RI D+ +++KL ESTWTTT LH L+ GT GP+T PRT +WM IG + S++AE NM+ LG HA W ELD+P ADF+L AR VL R M N IP DL EA+FLS I+HA DH R++WG +F D
Sbjct: 6 YYIRWPLAVLLGVWSAFFWRAPTKD-DVAALIEGTSLITLLRHGLPPGTDASEEEQPA-----------TSPMREERRYYIDVKTCLLEHVTRQPGSTYEE--GVVFPIKFWSMSYTKTRSI-GRSSXXXXXXXXXXRSGSDADTSHGKPKWEVRFQSFIVNGKEVTDPASQMSFLHVYLTCSSHAKCHVLGNSLVQRIYSDELLKDKLMESTWTTTWLHSALMEGTHGPLTYPRTTTNKWMGIGCPASHKSVVAETLNMTPLGGADHARTARWTELDLPLADFMLGARRVLLRAMHDNQIPMDLLEALFLSVIMHAVDHVLADRIMWGLNFKLD 325
BLAST of mRNA_H-paniculata_contig1366.2249.1 vs. uniprot
Match: A0A6H5LBR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR7_9PHAE) HSP 1 Score: 122 bits (307), Expect = 3.260e-29 Identity = 80/198 (40.40%), Postives = 97/198 (48.99%), Query Frame = 1
Query: 403 LIREPKTTYKSFKGVSTKIKSWSMSYTKTRRREGMGSALPYDPSTVSNRYPLPVTR--------------YQRKTPKK---------------------------------------QVTSFVVNNKPMYEREKIFAFLFHYHSCGTHVKSHVMGNALCDRILLDDRVREKLSESTWTTTALHYGLVYGTFGPMTEPR 837
+IR TY+S G ST IKSWSM YTKTRRR T S R+ P+ R R PK+ ++ SFVVN + + RE+++ L HYHS H K H+MGN+L DRIL+DDRV EKLSESTWTTTALH+GL YGT GP+T PR
Sbjct: 1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQQ--------MTRSRRFLSPLVRSCAQSHRFINNCHTVDRSKPKQSLPGAKELTPAEKQAAVAAAKKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPR 190
BLAST of mRNA_H-paniculata_contig1366.2249.1 vs. uniprot
Match: D7G8N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N7_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 2.030e-19 Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1
Query: 1192 MWAKPTLNPFWNNKICRSRKPFYRQLYLGLRDVDTFNVSRCITASIMY 1335
MW++PTLNPFWNNKICRSR PFYRQLY GL+++DTF VS+ ITASIMY
Sbjct: 1 MWSEPTLNPFWNNKICRSRNPFYRQLYKGLQEIDTFKVSKNITASIMY 48 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1366.2249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1366.2249.1 >prot_H-paniculata_contig1366.2249.1 ID=prot_H-paniculata_contig1366.2249.1|Name=mRNA_H-paniculata_contig1366.2249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=446bp KSASPTRRRSLSPAPYPGAKPITTGLYLEPHHLVGKLWWTHHFIQSPVYFback to top mRNA from alignment at H-paniculata_contig1366:17244..22971- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1366.2249.1 ID=mRNA_H-paniculata_contig1366.2249.1|Name=mRNA_H-paniculata_contig1366.2249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5728bp|location=Sequence derived from alignment at H-paniculata_contig1366:17244..22971- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1366:17244..22971- >mRNA_H-paniculata_contig1366.2249.1 ID=mRNA_H-paniculata_contig1366.2249.1|Name=mRNA_H-paniculata_contig1366.2249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2676bp|location=Sequence derived from alignment at H-paniculata_contig1366:17244..22971- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |