mRNA_H-paniculata_contig13642.2245.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13642.2245.1
Unique NamemRNA_H-paniculata_contig13642.2245.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13642.2245.1 vs. uniprot
Match: A0A6H5JP61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP61_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.390e-45
Identity = 97/195 (49.74%), Postives = 119/195 (61.03%), Query Frame = 3 
Query:    6 GSAFVNAGQGKISMHQPNSIIHDNVAQEETGE-AGAVLNGEGCSLWFRGSVSWMKNRGYNAAAMLNKGKVMFQEALLVQDNGAAMDGGGFINETGAEMSFCSNVEFIANVGTGYGGAILNHAALTFK-GGDGAIVL-------------------FQDNYCGEQECHDIQNKDGSDVSGLES-VPDLCAIGTQVL 524
            GSAFVN+  G++++ Q  SI  DNV+QEE    AGAV N     ++    +SW  N GY A A+LN G+++F+  + V+DN A MDGGGFINE+G  + F    EF++NVGTG GGAILNHA L F  GGD                        FQDNYCGEQEC DIQNKDGS + GL   VPDLC IGTQ +
Sbjct:   80 GSAFVNSAGGRVAVRQEMSIT-DNVSQEEASSVAGAVWNQADSVVFCTAMMSWEGNSGYQAGALLNAGRMVFRGEVSVRDNTAVMDGGGFINESGGRILFFHGAEFLSNVGTGSGGAILNHAELDFAPGGDXXXXXXXXXXXXXXXSTTRTFTLDFQDNYCGEQECQDIQNKDGSSILGLHQYVPDLCDIGTQDI 273
[Close]
BLAST of mRNA_H-paniculata_contig13642.2245.1 vs. uniprot
Match: D8LLD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD1_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 3.420e-40
Identity = 95/197 (48.22%), Postives = 118/197 (59.90%), Query Frame = 3 
Query:    6 GSAFVNAGQGKISMHQPNSIIHDNVAQE-ETGEAGAVLNGEGCSLWFRGSVSWMKNRGYNAAAMLNKGKVMFQEALLVQDNGAAMDGGGFINETGAEMSFCSNVEFIANVGTGYGGAILNHAALTFK-GGDGAIVL---------------------FQDNYCGEQECHDIQNKDGSDVSGLES-VPDLCAIGTQVL 524
            GSAFVN+  G++++ Q  SII DNV+QE E+  AGAV N     ++    VSW  N GY A A+LN G+++F+  + V+DN A MDGGGFINE+G  + F    EF++NVGTG GGAILN   L F  GGD                          F+DNYCGEQEC DIQNKDGS V GL   V +LC IGTQ +
Sbjct:  274 GSAFVNSAGGRVAVGQEMSII-DNVSQEDESSVAGAVWNQADSVVFCTAMVSWEGNSGYQAGALLNAGRMVFRGEVSVRDNTAVMDGGGFINESGGRVLFFHGAEFLSNVGTGSGGAILNRGELDFTPGGDXXXXXXXXXXXXXXXXXXTTRTFTLDFEDNYCGEQECQDIQNKDGSSVLGLHQYVSNLCDIGTQDI 469
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13642.2245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP61_9PHAE1.390e-4549.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLD1_ECTSI3.420e-4048.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13642contigH-paniculata_contig13642:1758..6263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1408
Cds size483
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.1455042-UTR-H-paniculata_contig13642:1757..26381622929082.1455042-UTR-H-paniculata_contig13642:1757..2638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13642 1758..2638 -
1691480724.406703-UTR-H-paniculata_contig13642:1757..26381691480724.406703-UTR-H-paniculata_contig13642:1757..2638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13642 1758..2638 -
1622929082.3262343-UTR-H-paniculata_contig13642:6219..62631622929082.3262343-UTR-H-paniculata_contig13642:6219..6263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13642 6220..6263 -
1691480724.4622505-UTR-H-paniculata_contig13642:6219..62631691480724.4622505-UTR-H-paniculata_contig13642:6219..6263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13642 6220..6263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.2564445-CDS-H-paniculata_contig13642:2638..27281622929082.2564445-CDS-H-paniculata_contig13642:2638..2728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 2639..2728 -
1691480724.4180868-CDS-H-paniculata_contig13642:2638..27281691480724.4180868-CDS-H-paniculata_contig13642:2638..2728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 2639..2728 -
1622929082.271867-CDS-H-paniculata_contig13642:3599..37561622929082.271867-CDS-H-paniculata_contig13642:3599..3756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 3600..3756 -
1691480724.4260147-CDS-H-paniculata_contig13642:3599..37561691480724.4260147-CDS-H-paniculata_contig13642:3599..3756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 3600..3756 -
1622929082.2898118-CDS-H-paniculata_contig13642:4532..46401622929082.2898118-CDS-H-paniculata_contig13642:4532..4640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 4533..4640 -
1691480724.433931-CDS-H-paniculata_contig13642:4532..46401691480724.433931-CDS-H-paniculata_contig13642:4532..4640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 4533..4640 -
1622929082.3039732-CDS-H-paniculata_contig13642:5424..55101622929082.3039732-CDS-H-paniculata_contig13642:5424..5510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 5425..5510 -
1691480724.4427066-CDS-H-paniculata_contig13642:5424..55101691480724.4427066-CDS-H-paniculata_contig13642:5424..5510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 5425..5510 -
1622929082.3161998-CDS-H-paniculata_contig13642:6177..62191622929082.3161998-CDS-H-paniculata_contig13642:6177..6219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 6178..6219 -
1691480724.4523714-CDS-H-paniculata_contig13642:6177..62191691480724.4523714-CDS-H-paniculata_contig13642:6177..6219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13642 6178..6219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13642.2245.1prot_H-paniculata_contig13642.2245.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13642 2639..6219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13642.2245.1

>prot_H-paniculata_contig13642.2245.1 ID=prot_H-paniculata_contig13642.2245.1|Name=mRNA_H-paniculata_contig13642.2245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MHQPNSIIHDNVAQEETGEAGAVLNGEGCSLWFRGSVSWMKNRGYNAAAM
LNKGKVMFQEALLVQDNGAAMDGGGFINETGAEMSFCSNVEFIANVGTGY
GGAILNHAALTFKGGDGAIVLFQDNYCGEQECHDIQNKDGSDVSGLESVP
DLCAIGTQVL*
back to top

mRNA from alignment at H-paniculata_contig13642:1758..6263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13642.2245.1 ID=mRNA_H-paniculata_contig13642.2245.1|Name=mRNA_H-paniculata_contig13642.2245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4506bp|location=Sequence derived from alignment at H-paniculata_contig13642:1758..6263- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGGCTCTGCTTTTGTTAACGCTGGTCAAGGAAAGATTTCGATGCAT
CAGCCGAACTCTATCATCCACGACAATGTCGCCCAGGTATCTACCGCGGT
ACAGTACAGCATAGTGTGCACCAACAGAAGCACAATAGCTCGAACGTGAC
GAAATACAAAATATCAGTACGATTACCCTTCGTTAACCAGTACCAAGTCG
CGATACAGTGACGCTGCATCTCATGGGGACATGGGGACGTGAGCATACCG
ATTGACCCGGCATGCTGAATCCGTTTCAGATGCTGCAAGGTGCGGAAGTC
ATCGCAGTATCAAGTATACCCGTAAAATCTCCAGCATTGAGTCTGATGGT
ACCAACAACGAGTACCGTTCCGAGGGTGGACTAGCCAGCCATGACAACTA
TCTAAACGAAAAAAACAACCCAACCCAACACAACACAACGGCAGTTCAAA
AAAACGTTTTCGAAAAGCAAGAAATTTTGTCCGTCTCGAGGTTGGTTGCT
CGCCGTACACGTCTGGGCGTCACTTAAAAATAAATAAAAATTCTGTTGGC
CTACCGGATACCAACAATTACATGCACACGCACACACACAGAAACAGAGG
AGATCGACACACGCGCGCCATAGCGCTCCTGGAATTAGCGTCACACAGCA
CTTGTATCTCCTGCACTCATCAGTGACCATCCACCATTCTCCTCTTGTGT
TTTACGTCCGGTCACGTGCGTCTTGCAATATGATCGTTTTCGCGATTTAT
TAGGAAGAGACCGGCGAGGCTGGCGCTGTTTTGAACGGAGAAGGATGTTC
ACTCTGGTTCCGGGGCTCGGTATCGTGGATGAAAAATCGGTGAGAAGTAA
ACCCTACAAGTTGTACAGCTTTGAAGAAAGGGACAAGATTAAAGGTGCCC
GCCGTGTTCTCATTGTTCATTTTTTTTTTTTTTTTCCAATTAGAAGCTGA
TTGATTGGTAGGAGATATTCGGTTGGCAAGTGACGTCACCGATGGTCCTG
ACGTCATTTTTGTAGCGGGGTAATTTTAACGTGAACGGCGTCACTCGGTG
AAAAATTGCGGGCACATTTTCCCTTTCTCCAGGATGGGTAAAATACGATA
CGATCGGTCGGTGAGTGAAGTTGCCGGTAGAAAAGGATAATACCTGGGAA
TCAAGTAGTAAAAGATGGCGATATAGATGGAAACAAGTGTGTGACCACCC
GGTATAGCGTACCTCGACATTGAGGGATCACGGACGCCAGGTTGAAACGG
CTCATGAACGAAATGTGCGTTAGCGGCCAACGGATGATGGATGGATACCG
TTTTTGAAAAAAGCTTCAACCTTTTATCCCCCGTCCCCGTCAAGGATGTA
GGTTCTCTCTTGATACACGGTCGTGAACAAGTTTTTCCACCCTCATGACC
CTTTGTGGTCTTGCAGTTGCTTGCAAAAGACATATGACACTCCATCCACT
CACGCCCTACAGGCTTGATGGCCCTGAACTTCATACCTTATCTCACTCAA
CCCTACCCAACATTTCTTGGACCTTGTGCCGCACTCGGACGCTTGCGCTT
CCCTGGTACGCTATCCCTGCATCTTCTTCTCACTCGCCCCGGTTGCCGCT
CCGAAATTTGACGTACGCGGCAGAGGGTACAACGCGGCGGCGATGCTCAA
CAAGGGCAAGGTCATGTTCCAGGAAGCACTCCTGGTGCAAGACAATGGGG
CAGCTATGGACGGTGGAGGATTCATCAATGAGTGAGCTTTGTCTAGTGCT
GTGCGCTGTTTCGTATTCGCCAATCACATGAGATAATTTTTCTCTTGTCC
TTGATGAAAAATATCGTGTTATCGATCGCTCCGTTGAAACACTGCGCCGG
TACGTGGCGCCGCGATGGGGATAATTAAACGTCACGACGGATCTATCAGT
GTCACCACATTGGAAAACAAGTAGCAGCAAACATTAGGCATTTTGGTGAA
CAACTAACGAAACTGCGCTTGTCTTGCACTGTATGTGTGGCGAGAGTTTT
TTTTTTTTTTTTTGTATGTGAGGCCGAGACGCCCCCCGCCTTCGCTCCAC
CTGTAATCAAGCCAGCGCTGTTCATATTCCCAATATACTTGTAAGACCTA
AAGTGTGTGTTGGTGCAGTCTTTTACTGCGTCAATAGCCCTTCAATTGTG
CGTTTTGAACTTGTCGGAGAAGGTAGTGAAAACGACCACAACACGAAAAA
AAACGACGTCCTTACACACGCAAAGCCGTTCCATGACCTATGTACTACTA
CTACTACTACTACTACCGAGAAGGTACACTGTTAGTCGCCATGTGGCAGA
AACAGTACTCCTATCAATATTCTCCGATGCCAAATTACATTTCGGAAAGA
TCTGAGACAGCTTTAGAACAGGTGGGGTCCGGGGCAGGAGAACATGAACA
GCTCACCTTGCTATATCGATGTTTCCGATTTTGCAATGGACGAAAATCCA
TCCGATTCTTTTCGAACGCGAGCATAATGTACACGTATCGTTTTCCGCGG
CCGCCAGGACTGGTGCCGAGATGTCGTTCTGTTCTAATGTGGAGTTCATC
GCCAACGTCGGCACCGGATATGGCGGGGCAATCCTCAATCACGCTGCACT
CACGTTCAAGGGTGGCGACGGGGCTATTGTCCTTTTCCAAGACAATTACT
GCGGGGAGCAAGAGGTGAACAAAGGATTGAATATTTAGAAACTTATAAAA
TGGGTTTGGGCTATAACTATCACAACAGTACTTAATTCTTTGCATCTTAA
CTTGATACGATTGTCTTATCTCGATTCACCCAATATACATGCACACTACC
GGCTGGTACTCTCACTCCGAGTTAGTAAACACGGTACATGAAACGTGTGC
ACCCATCACCAGCGGATTTTTTTTGGGGGGAGGAGGGGGGGGGACCTATG
GCTTTTATCATGTTCTCCGTTTCCTCCCCCAAAACGTCTTTTCCAGAGCG
TCTTGCCCTCGTAGTGCGCATTTTACATTCATTTTCGCGTCATGCTCGTC
CTTTTTTTTCCCCTCAACTACTTGGATTGTTACTGGGGGGCACCTGGTAC
GGTATCCCTTTGTTCATCAAATGGTGCACATATGCTTGGTGTCTGACACT
TTGAGGCGAATCCAATTATGATGACTCCTTCTGTTGGGGTGGGGAGCTCC
GTTGCTTCCAGTGATCCACCGAGCTCCGCGCGAAACTGAGCTTGTTGGGT
GCTGCTGGCCGGACGCGCTCGCGACTCCATTTCTAAAAATGGTGTCGATT
AGGCTGTTCGAAGCGAAGCGATTGAAAGACGGCAAGCCGCGGTTGGCGTG
GTTGTCGGCGCGGTCCTCGTGCGCGAGCCTCCTGCCGTCTTATTGCCATC
GTTGCTGTGTATGCTGGGCCGGCGTGTGGCGGAAGGGTCTCTGTGTTATA
CTTCTTGCTGACTTTTGCTTCTGCACCCTTGTCATTTTGTTTGTCGCTGA
TTTTTGTGCTCCCTCCCGCATTATTTTCTCGCCGCATCCCTCGTCGCGTC
ATGGTGTGTTCTCCACGTTGAATTTGACTCTGCAGTGCCATGACATTCAA
AACAAAGACGGGAGCGATGTCAGTGGACTCGAAAGTGTCCCCGATCTATG
TGCTATCGGGACCCAGGTGTTGTGAAGGCAAGGCCCTTCGTAAGCCCTTT
CAAATTTAAAGGGGTGGAGAGCGTCCAAACGAAGCATGGAGCCGTTGGAC
GTTACACACTCCGAAATTGGGGAGTCGTTGGAAATAGAGTGCGGAATGTT
TGGGTCGAAACCGTTGAAATTTAGGCACCCATCAAAGTGGGGGTATGTCG
GAAAGGAGCCCATTCCGAGGGAAGAATAATCAGGACGGCTCTGCATCCCT
GGCGAAAAAGGACTCTCGGATGTTGTAGACTTGCTCTCCCGGGAGAAGGA
GGGCAAACTTTACGCAGTCCACCCCCCATCTTGCTGAGGCTTTCGTTCTT
TTTGCGGACGTTTGGTCTTCAGTACTATACGAATTTTTAGAGTAGCATCA
ATTTACGTCTCCCAGTTGTATTGCTTATATCCAGGTCCCCTTAAGAGTGT
ATATCCCAGTCGTGACGGAAGTGACTTGCACATCCAAATTTGATGTTTGA
AAAAAACTTTGTATATTCGTTTCTGTCGTTTCTGGGGATGGATTATAGAC
GGGAAAATCAGTGATTATACATAAAAAAAAAAATTCTCAGCCGGATCTAT
TTGCCGTTTTTTGTAGAGAAGCAAAAAAAATAAAATAAGAGGGCTGTCGT
GTGTTATTAATGAGTTACCTTGTCGAGTGTAGGCCTTGCTCGATTGGACG
TTTGATCGTTTGTAAATCAGCGTTTCGTCCTTTCGATAGAGTAAAGCCAG
GTTTACCTGCAGTATTTTTGCATGTATGGATCGGATGCATGTGCATGTTA
TACCCGATTCAGGGGGAGGTGAATTCGCTCCGGATAATACGGGTGCTGTG
TTTGGTATTGCTTCGGAGCATTTCTCGGGCCATGGTGGAAATGACTTGTG
CAGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13642:1758..6263-

>mRNA_H-paniculata_contig13642.2245.1 ID=mRNA_H-paniculata_contig13642.2245.1|Name=mRNA_H-paniculata_contig13642.2245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig13642:1758..6263- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCAGCCGAACTCTATCATCCACGACAATGTCGCCCAGATGCATCA
GCCGAACTCTATCATCCACGACAATGTCGCCCAGGAAGAGACCGGCGAGG
CTGGCGCTGTTTTGAACGGAGAAGGATGTTCACTCTGGTTCCGGGGCTCG
GTATCGTGGATGAAAAATCGGAAGAGACCGGCGAGGCTGGCGCTGTTTTG
AACGGAGAAGGATGTTCACTCTGGTTCCGGGGCTCGGTATCGTGGATGAA
AAATCGAGGGTACAACGCGGCGGCGATGCTCAACAAGGGCAAGGTCATGT
TCCAGGAAGCACTCCTGGTGCAAGACAATGGGGCAGCTATGGACGGTGGA
GGATTCATCAATGAAGGGTACAACGCGGCGGCGATGCTCAACAAGGGCAA
GGTCATGTTCCAGGAAGCACTCCTGGTGCAAGACAATGGGGCAGCTATGG
ACGGTGGAGGATTCATCAATGAGACTGGTGCCGAGATGTCGTTCTGTTCT
AATGTGGAGTTCATCGCCAACGTCGGCACCGGATATGGCGGGGCAATCCT
CAATCACGCTGCACTCACGTTCAAGGGTGGCGACGGGGCTATTGTCCTTT
TCCAAGACAATTACTGCGGGGAGCAAGAGGACTGGTGCCGAGATGTCGTT
CTGTTCTAATGTGGAGTTCATCGCCAACGTCGGCACCGGATATGGCGGGG
CAATCCTCAATCACGCTGCACTCACGTTCAAGGGTGGCGACGGGGCTATT
GTCCTTTTCCAAGACAATTACTGCGGGGAGCAAGAGTGCCATGACATTCA
AAACAAAGACGGGAGCGATGTCAGTGGACTCGAAAGTGTCCCCGATCTAT
GTGCTATCGGGACCCAGGTGTTGTGATGCCATGACATTCAAAACAAAGAC
GGGAGCGATGTCAGTGGACTCGAAAGTGTCCCCGATCTATGTGCTATCGG
GACCCAGGTGTTGTGA
back to top