mRNA_H-paniculata_contig13633.2243.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13633.2243.1
Unique NamemRNA_H-paniculata_contig13633.2243.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13633.2243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13633contigH-paniculata_contig13633:3210..3572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.947859-UTR-H-paniculata_contig13633:3209..32331622929080.947859-UTR-H-paniculata_contig13633:3209..3233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13633 3210..3233 +
1691480724.1749315-UTR-H-paniculata_contig13633:3209..32331691480724.1749315-UTR-H-paniculata_contig13633:3209..3233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13633 3210..3233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.962392-CDS-H-paniculata_contig13633:3233..35721622929080.962392-CDS-H-paniculata_contig13633:3233..3572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13633 3234..3572 +
1691480724.1851757-CDS-H-paniculata_contig13633:3233..35721691480724.1851757-CDS-H-paniculata_contig13633:3233..3572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13633 3234..3572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13633.2243.1prot_H-paniculata_contig13633.2243.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13633 3234..3572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13633.2243.1

>prot_H-paniculata_contig13633.2243.1 ID=prot_H-paniculata_contig13633.2243.1|Name=mRNA_H-paniculata_contig13633.2243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MPWMVDEQKGVKVESPYDQPLEMQVYQHRLLRQGNSGWWEKHRVRETTLQ
GFYQRYNNNNNSSKELGDERFPEQQMSSKALERRQVYAHRGAPYPNTNPL
VQHFACSERESVA
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mRNA from alignment at H-paniculata_contig13633:3210..3572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13633.2243.1 ID=mRNA_H-paniculata_contig13633.2243.1|Name=mRNA_H-paniculata_contig13633.2243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig13633:3210..3572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACAAGTAAAATTGCAAGCGCAGATGCCGTGGATGGTGGATGAGCAGAA
AGGAGTAAAGGTGGAATCGCCGTACGATCAGCCGTTGGAAATGCAAGTGT
ACCAGCACCGATTATTGCGCCAGGGAAATAGCGGTTGGTGGGAGAAGCAC
CGTGTACGTGAAACGACGCTGCAAGGGTTTTATCAGCGGTACAACAACAA
CAACAACTCATCAAAGGAGCTTGGAGATGAGCGTTTTCCAGAGCAGCAAA
TGTCATCGAAAGCATTGGAACGCAGACAAGTCTACGCGCATCGCGGTGCT
CCGTACCCAAACACTAACCCACTGGTCCAGCACTTTGCGTGTTCTGAGCG
GGAGAGCGTGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig13633:3210..3572+

>mRNA_H-paniculata_contig13633.2243.1 ID=mRNA_H-paniculata_contig13633.2243.1|Name=mRNA_H-paniculata_contig13633.2243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig13633:3210..3572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTGGATGGTGGATGAGCAGAAAGGAGTAAAGGTGGAATCGCCGTA
CGATCAGCCGTTGGAAATGCAAGTGTACCAGCACCGATTATTGCGCCAGG
GAAATAGCGGTTGGTGGGAGAAGCACCGTGTACGTGAAACGACGCTGCAA
GGGTTTTATCAGCGGTACAACAACAACAACAACTCATCAAAGGAGCTTGG
AGATGAGCGTTTTCCAGAGCAGCAAATGTCATCGAAAGCATTGGAACGCA
GACAAGTCTACGCGCATCGCGGTGCTCCGTACCCAAACACTAACCCACTG
GTCCAGCACTTTGCGTGTTCTGAGCGGGAGAGCGTGGCGATGCCGTGGAT
GGTGGATGAGCAGAAAGGAGTAAAGGTGGAATCGCCGTACGATCAGCCGT
TGGAAATGCAAGTGTACCAGCACCGATTATTGCGCCAGGGAAATAGCGGT
TGGTGGGAGAAGCACCGTGTACGTGAAACGACGCTGCAAGGGTTTTATCA
GCGGTACAACAACAACAACAACTCATCAAAGGAGCTTGGAGATGAGCGTT
TTCCAGAGCAGCAAATGTCATCGAAAGCATTGGAACGCAGACAAGTCTAC
GCGCATCGCGGTGCTCCGTACCCAAACACTAACCCACTGGTCCAGCACTT
TGCGTGTTCTGAGCGGGAGAGCGTGGCG
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