mRNA_H-paniculata_contig13633.2242.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13633.2242.1
Unique NamemRNA_H-paniculata_contig13633.2242.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13633.2242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13633contigH-paniculata_contig13633:1391..2342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13633.2242.1prot_H-paniculata_contig13633.2242.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13633 1404..2342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.883912-UTR-H-paniculata_contig13633:1390..14031622929080.883912-UTR-H-paniculata_contig13633:1390..1403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13633 1391..1403 +
1691480724.142449-UTR-H-paniculata_contig13633:1390..14031691480724.142449-UTR-H-paniculata_contig13633:1390..1403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13633 1391..1403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.8986118-CDS-H-paniculata_contig13633:1403..15591622929080.8986118-CDS-H-paniculata_contig13633:1403..1559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13633 1404..1559 +
1691480724.1512532-CDS-H-paniculata_contig13633:1403..15591691480724.1512532-CDS-H-paniculata_contig13633:1403..1559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13633 1404..1559 +
1622929080.9120715-CDS-H-paniculata_contig13633:2306..23421622929080.9120715-CDS-H-paniculata_contig13633:2306..2342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13633 2307..2342 +
1691480724.1595435-CDS-H-paniculata_contig13633:2306..23421691480724.1595435-CDS-H-paniculata_contig13633:2306..2342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13633 2307..2342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13633.2242.1

>prot_H-paniculata_contig13633.2242.1 ID=prot_H-paniculata_contig13633.2242.1|Name=mRNA_H-paniculata_contig13633.2242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MVDLKTWQCKHPGCRRRQTKEMEDGEQVDFCSIHGATDSPDPTSTFQDCE
CPLPDLCKGGKKAA
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mRNA from alignment at H-paniculata_contig13633:1391..2342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13633.2242.1 ID=mRNA_H-paniculata_contig13633.2242.1|Name=mRNA_H-paniculata_contig13633.2242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=952bp|location=Sequence derived from alignment at H-paniculata_contig13633:1391..2342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGGAGAAAGGAATGGTCGATCTCAAAACCTGGCAGTGCAAGCACCCGG
GATGCCGGCGGCGGCAGACCAAGGAGATGGAAGATGGAGAGCAGGTTGAC
TTCTGTTCTATACACGGAGCGACAGATTCCCCCGACCCAACAAGCACGTT
TCAAGACTGCGAATGTCCGGTGTGTACCGAGTATATCTGAGTTTATGGGC
CCTGACTCGATACCAAACTACTAGTGTGATCTACACTTGTTTGGCCTACG
TGTGATTTTTTCTTTTAAGAAAAATGATGCGTTTGCGCGTTCTTAGTGAA
GGTCAATTGAGTTGTTTAATGCCCAACATGATTGTTTGCAACTTCTAGGT
ATATGTGACACTTCAAACTCACACAATATATGCATGGCGTTTGACGGGCC
ACCGGTTTACCATTCCGTGTTCGGGAACACGATATATATATAGGCTCCAC
ACGTGGCCACTTCGGTATCCATTTGGGCCAGAAACGACCCTCTGGAGCAT
TTTCACCCTCTGAAATAGTTACCCATGTAGATTTCTATACATGAAATATT
CCTGGACCAGAGGTCGAGAATACTCCAGAGAGTCCACGTGTCTCGTGGCT
TCGTCTCATTGTCTCGTTGTCATCGCAAAGCCAACTCTACTGTTCGACCA
CCTCAAGTACCTAAAAAGCATATCTATTTCTTAGAACTGAGAGCTGATGT
ATGAAATAATATAAAGAACATGCTCTCGTATCATGGTGCTCTCTCAGGCC
TTTAGTGAGTGGAGAATATCATGCTATGGAGAGAATGTAAAGAGTCCATC
AAATCCACTGTGCAGAAGGGATCCACGTATTGAAGAAATGATTCCTGGAT
ACCCATTTTCGCTTGATGCCCTTTTTTTATCACAACGTGGTCTCTTTCCA
TCTCACTTTTTCACAGCTACCCGATCTATGCAAGGGTGGAAAAAAGGCTG
CC
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Coding sequence (CDS) from alignment at H-paniculata_contig13633:1391..2342+

>mRNA_H-paniculata_contig13633.2242.1 ID=mRNA_H-paniculata_contig13633.2242.1|Name=mRNA_H-paniculata_contig13633.2242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig13633:1391..2342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGATCTCAAAACCTGGCAGTGCAAGCACCCGGGATGCCGGCGGCG
GCAGACCAAGGAGATGGAAGATGGAGAGCAGGTTGACTTCTGTTCTATAC
ACGGAGCGACAGATTCCCCCGACCCAACAAGCACGTTTCAAGACTGCGAA
TGTCCGATGGTCGATCTCAAAACCTGGCAGTGCAAGCACCCGGGATGCCG
GCGGCGGCAGACCAAGGAGATGGAAGATGGAGAGCAGGTTGACTTCTGTT
CTATACACGGAGCGACAGATTCCCCCGACCCAACAAGCACGTTTCAAGAC
TGCGAATGTCCGCTACCCGATCTATGCAAGGGTGGAAAAAAGGCTGCCCT
ACCCGATCTATGCAAGGGTGGAAAAAAGGCTGCC
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