mRNA_H-paniculata_contig1363.2241.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1363.2241.1
Unique NamemRNA_H-paniculata_contig1363.2241.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: A0A6H5J7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D3_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 6.200e-28
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 2
Query:  281 DDEEREVTGKVLWDCAQVLWDLLANPHPQNAFSVRGKRVIELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKANSKNT 532
            D+E+ E+TG+ LWDC QVLWDL+A+P   N F+VR KRVIELG GTGALSVG+AR+GAA VTCTDLPCHL  I++TV AN++ +
Sbjct:   59 DEEDMELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVLANARTS 142          
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: D8LGR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR1_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.430e-27
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 2
Query:  281 DDEEREVTGKVLWDCAQVLWDLLANPHPQNAFSVRGKRVIELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKANSKNT 532
            D+E+ E+TG+ LWDC QVLWDL+A+P   N F+VR KRVIELG GTGALSVG+AR+ AA VTCTDLPCHL  IQ+TV AN++ T
Sbjct:   59 DEEDMELTGRTLWDCTQVLWDLVADPREGNTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALIQSTVVANARTT 142          
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: A0A7S2RJW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJW5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.000e-10
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  296 EVTGKVLWDCAQVLWDLLANPHPQ---NAFS------VRGKRVIELGAGTGALSVGMARAGAAW-VTCTDLPCHLRHIQATVKANSK 526
            ++TG V+W+C+ VLW++L +   +    A S        GKR+IELGAGTG LSV +A AG A  V  TDLPCH+  I+A +  N+K
Sbjct:  363 DITGTVVWECSSVLWNMLEDSRMEVNGGAASKTLRGLTEGKRIIELGAGTGLLSVALASAGGAREVLATDLPCHMPQIRANLALNAK 449          
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: A0A7J7QNL2_9CHLO (Putative methyltransferase-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QNL2_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 2.490e-9
Identity = 38/84 (45.24%), Postives = 47/84 (55.95%), Query Frame = 2
Query:  305 GKVLWDCAQVLWDLLANPHPQNAFSVRGKRVIELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKANSKNTNGAAEAKE 556
            G V+WD A VL + L       A S+ GKRV+ELGAGTG + +  A  GAA V  TDLP H++HI   +K N       A A E
Sbjct:   54 GCVVWDAALVLVNYLVKQAEIGALSLSGKRVVELGAGTGVVGLTAAALGAAEVLLTDLPHHVQHISGNIKRNGLQHTATAAALE 137          
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: A0A383V4R5_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V4R5_TETOB)

HSP 1 Score: 64.7 bits (156), Expect = 2.170e-8
Identity = 44/118 (37.29%), Postives = 61/118 (51.69%), Query Frame = 2
Query:  167 HMNSRWCLKPIELGEELGQKKQRPRNEVHRRKESSDTDDDEEREVTGKVLWDCAQVLWDLLANPHPQNAFSVRGKRVIELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKAN 520
            H++   C++ IEL E+         + +H  ++    DD       G V+WD A VL + LA         +RGKRVIELGAGTG + +  A  GAA V  TDLP  ++HI   +K N
Sbjct:   40 HVDDLGCVRDIELTED---------HTLHVAEQHGLADD------CGCVVWDAALVLVNYLAKQVELGRLDLRGKRVIELGAGTGVVGLTAAALGAAEVLLTDLPHLVQHISGNIKRN 142          
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: W4GN74_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GN74_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.690e-7
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  302 TGKVLWDCAQVLWDLL---ANPHPQNAFSVRGKRVIELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKANSKNTNGAAEAKEGMESAWASNAP 589
            TG  +WD + VL   L    +   QN  SVRGKRV+ELGAGTG + +  A  GA+ VT TDL   L ++ A V+AN+ +   AA + +  E  W   AP
Sbjct:  129 TGLTIWDGSVVLAKYLEHATSSFVQNEDSVRGKRVLELGAGTGLVGLAAAVCGASHVTLTDLAYTLDNLSANVRANASSI--AATSVDVAELDWFKAAP 225          
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: A0A2P5BEC1_PARAD (Lysine methyltransferase (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5BEC1_PARAD)

HSP 1 Score: 57.8 bits (138), Expect = 9.180e-7
Identity = 38/97 (39.18%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  293 REVTGKVLWDCAQVLWDLLANPHPQNAFSVRGKRVIELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKANSKNTNGAAEAKEGMESAWASN 583
            R +TG  +WD A VL + LA    Q  FS+RGK VIELGAG G   +  AR GA+    TD+   +  ++  V+AN     G  +  E  E  W S+
Sbjct:   21 RALTGAWVWDSALVLAEWLAAAQDQLEFSLRGKFVIELGAGAGLPELAAARIGASRAVLTDVGALIPRLRKNVEAN-----GLGDRVEVSELVWGSD 112          
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: R1EW32_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EW32_EMIHU)

HSP 1 Score: 60.1 bits (144), Expect = 1.110e-6
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  302 TGKVLWDCAQVLWD-LLANPHPQNAFSVRGKRVIELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKAN 520
            TG  +WD A+   + LLA   P  A  V GKRV+ELG+GTG   +  A AGA+ VT TDLPC L  ++  V+AN
Sbjct:  113 TGCTVWDAARAAAEQLLAGRRPL-ARLVAGKRVVELGSGTGLAGLACAAAGASHVTLTDLPCRLPLLRRNVRAN 185          
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: A0A485KVL5_9STRA (Aste57867_12455 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVL5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.400e-6
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 2
Query:  302 TGKVLWDCAQVLWDLLANPHPQNAF--SVRGKRVIELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKAN 520
            TG  +WD + VL   L +    +A   SVRGKRV+ELGAGTG + +  A  GAA VT TDL   L +I A + AN
Sbjct:  136 TGLTIWDGSVVLAQYLEHTSAVDAHQDSVRGKRVLELGAGTGLVGLAAALCGAADVTITDLGYTLPNIDANIAAN 210          
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Match: A0A2P5BHZ1_TREOI (Lysine methyltransferase n=1 Tax=Trema orientale TaxID=63057 RepID=A0A2P5BHZ1_TREOI)

HSP 1 Score: 56.6 bits (135), Expect = 9.410e-6
Identity = 38/97 (39.18%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  293 REVTGKVLWDCAQVLWDLLANPHPQNAFSVRGKRVIELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKANSKNTNGAAEAKEGMESAWASN 583
            R +TG  +WD A VL + LA    Q  FS+RGK VIELGAG G   +  A  GA+ V  TD+   +  ++  V+AN     G  +  E  E  W S+
Sbjct:   28 RALTGAWVWDSALVLAEWLAAAQDQLEFSLRGKSVIELGAGAGLPGLAAALLGASRVVLTDVGALIPGLRKNVEAN-----GLGDRVEVSELVWGSD 119          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1363.2241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5J7D3_9PHAE6.200e-2866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGR1_ECTSI1.430e-2767.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RJW5_9STRA3.000e-1045.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7J7QNL2_9CHLO2.490e-945.24Putative methyltransferase-domain-containing prote... [more]
A0A383V4R5_TETOB2.170e-837.29Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
W4GN74_9STRA6.690e-742.42Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
A0A2P5BEC1_PARAD9.180e-739.18Lysine methyltransferase (Fragment) n=1 Tax=Parasp... [more]
R1EW32_EMIHU1.110e-648.65Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A485KVL5_9STRA9.400e-648.00Aste57867_12455 protein n=1 Tax=Aphanomyces stella... [more]
A0A2P5BHZ1_TREOI9.410e-639.18Lysine methyltransferase n=1 Tax=Trema orientale T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1363contigH-paniculata_contig1363:5112..14651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue8.8e-07
Seed eggNOG ortholog2903.EOD30830
KEGG koko:K21805
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-07_005350.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Exons3
Model size918
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1363.2241.1prot_H-paniculata_contig1363.2241.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1363 5435..14554 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.8001373-UTR-H-paniculata_contig1363:5111..54341622929080.8001373-UTR-H-paniculata_contig1363:5111..5434Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1363 5112..5434 -
1691480724.0949147-UTR-H-paniculata_contig1363:5111..54341691480724.0949147-UTR-H-paniculata_contig1363:5111..5434Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1363 5112..5434 -
1622929080.8457296-UTR-H-paniculata_contig1363:14554..146511622929080.8457296-UTR-H-paniculata_contig1363:14554..14651Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1363 14555..14651 -
1691480724.1333122-UTR-H-paniculata_contig1363:14554..146511691480724.1333122-UTR-H-paniculata_contig1363:14554..14651Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1363 14555..14651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.812855-CDS-H-paniculata_contig1363:5434..54901622929080.812855-CDS-H-paniculata_contig1363:5434..5490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 5435..5490 -
1691480724.105125-CDS-H-paniculata_contig1363:5434..54901691480724.105125-CDS-H-paniculata_contig1363:5434..5490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 5435..5490 -
1622929080.823106-CDS-H-paniculata_contig1363:5515..56631622929080.823106-CDS-H-paniculata_contig1363:5515..5663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 5516..5663 -
1691480724.1133864-CDS-H-paniculata_contig1363:5515..56631691480724.1133864-CDS-H-paniculata_contig1363:5515..5663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 5516..5663 -
1622929080.8352175-CDS-H-paniculata_contig1363:14260..145541622929080.8352175-CDS-H-paniculata_contig1363:14260..14554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 14261..14554 -
1691480724.124315-CDS-H-paniculata_contig1363:14260..145541691480724.124315-CDS-H-paniculata_contig1363:14260..14554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 14261..14554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1363.2241.1

>prot_H-paniculata_contig1363.2241.1 ID=prot_H-paniculata_contig1363.2241.1|Name=mRNA_H-paniculata_contig1363.2241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MPKVASYSIVLDDKDWVGQVASKHMNSRWCLKPIELGEELGQKKQRPRNE
VHRRKESSDTDDDEEREVTGKVLWDCAQVLWDLLANPHPQNAFSVRGKRV
IELGAGTGALSVGMARAGAAWVTCTDLPCHLRHIQATVKANSKNTNGAAE
AKEGMESAWASNAPW*
back to top

mRNA from alignment at H-paniculata_contig1363:5112..14651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1363.2241.1 ID=mRNA_H-paniculata_contig1363.2241.1|Name=mRNA_H-paniculata_contig1363.2241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9540bp|location=Sequence derived from alignment at H-paniculata_contig1363:5112..14651- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCATCATCTACACGGTTGACCGGCACAAGTCTCGCATGTTTGCAATATA CCCGAACGGATTGGTAAGCACTTCTGTTGGCAACCTCGTACAGCCTAATG CCGAAAGTCGCATCATACTCAATTGTCCTGGACGACAAGGACTGGGTGGG ACAAGTAGCAAGTAAACACATGAATTCTCGCTGGTGTCTCAAACCAATCG AGCTCGGAGAGGAGCTAGGGCAGAAGAAGCAGAGGCCGAGGAATGAGGTA CACAGAAGGAAAGAAAGCTCAGATACTGACGACGATGAGGAGAGGGAGGT GACGGGGAAGGTGCTATGGGACTGTGCCCAGGTGCTGTGGGATTTGCTGG CAAACCCGCATCCACAAAACGCGTTTTCCGTACGAGGGAAGGTGGGAACG TCAGAATGAGAGACAGAGAAAGGTGGATGTGTTCGGTAAACATGTATGAC TGTTGTTCATTGGTGGCAGATAATTAGGCATTAATAACGCGTAGGCTGCG AATCACACGTCGACGAACATGTACGCACCACAGTGCATGTGCGGATCAAT TGAGACAAATCATGTGCTGATGATGCATAGCGTATGATTCAGCAAGGGAC GAACATTTACGCATCATGGAGCGTGTAGGATCAGCTGAGACACGATGTGT GCTGATGACGCACAGGATGCTTATCGCTCCTGGGCAAACATGTACGGATC GTACGGGTTGTGCACACCGTTTCATTTTCACAAACATGTACAGATACTAC GTCAAGTACGCATCATGCAACAGAGACAGAAAGGACCAGGCTTATTAACT CCGCCTGTGTCAACTTGATTCCCGCCTGTACAAAACGGGATCAACGCGTT TGCCATGAAAAAGGGGATAGGGAGCTACTACCATTCAGAGAGCCAACCGA GTACATGCAGCACAAGCAGGAAATTCATGGCTCTGCACATAACGATTACA GCACTCAACGTTTCTTATGTCAGATTCAATTTTCACTCCGAAACGGAAAT ACAGATCGTACGGCTAAAGCTCTCCCGGACACACCGAACAATATGGCGTA CGCATCACTCGTGGACAAACATGTATACATCATGGGTCGTGTACGGCTTC ACTGAGGCAAAATGTGCCCTGATAATGCATAGTGTACGCAACGCTCGTGG ATAAGCATATACCCATCGCGGGGCGTGTATGGATCAGCTAAGAAAAGATG TGTGCTAATGATGCATAGCGTACGCATCAGCAATGGACAAACATGTACGC ATTGTAAGGACGTGTACGCATCACTAGGAATGATGTGTCGAATGATGCGC ATGGGATGGATCGCGAGCTGTACCGTTGGATTTGTGGAACCTTTGAGCAT TGTCCATCTATCCGACCGGTAATAATTAAGGGCAATGGACAGGAAAGAAT ATACCCCCGTCCATTTTGGAGAGTGGCACACGGTCACATCCAACGTTTGC AGACGACACTCAGTGACGAGAATTCTGTTGATTTCGCTTGGAGGACCAAC TGGTGCTTCCCTTCTACACGCCTATGAAGAAATACGGGAATAATACAAGA GAGATCAGGCGTAGCAGGGCAATGCAGTATGGGATACTCCCAAGGAGGGC CTCCTGTACCCTAAAGTGTCCAGAGCATTCGAGGTATACACTTTCGATTC TACTCCTGTTGGGCGTCACCTTTTCTTGTCCACTTTTGCCGAAACTGTTC AACTTTGTACCTTTTTCTGTTCACTACTGTACCCTGTTATGGTCACTGTC TAAGTCGGTCGATGGAGATGTGTTTTATGGTCGTTCGCAACAACTTGGTC GTTGGCGTCAGCGACCCATAGCATGTATGTCAGAGTATGTTTGGTAGGCA TATATATATAGAGATCACCGTCCAACACCAACACATGCTTGCCCACCACC TTCACTGGCCCCATTGCTCACATCCACTCTCACCACCCGGTACATTGTAC TGGATAACATTACTACCGTCGTACAGCTGCACAACAATACAAACAGTCAC ATAGTCGAGATGTCGCACCAACTGCAAGCCAGCTGTAGTTGTCTCCCTGT GGTGGGGGCAGGTAACGCATAGCCTGGTTTAGCCTGTGGTGACGTGTTTC CCACTCCGAAGGAACTTAGGGTAGCCGTCGAACAAAATTCTAGACGGAAC AATTGGTCTTTCTTCGCCGTACCGGGTCGTTCACGCCAAAAGATATATTA CAACGTAAATGGCAAGGTCGATCACGAAAACAACACTGCTCGGAAAGTGG TTACTACTCTACGATGACGACGCCACCCAAAATAGCGACCAATTTCATCG TCTACACATGTTGAATGTGGCCGGGTGCCGCCGCACCCGGAACTGTACAA AGTGAAGAGGGTATAAACAGCCGCTCATGAAAAAGGGGAACCAAATTTTT CGATGGAAGAAGTCCCATGGATTGTTTCCATTTTTCATGAGCAGCTGTTT ATTCCCTTTCGTGCCCCCTGCCCTTAGTTAAATAAAATACGTTTAGTACG ACAGTTGATTCGTTGATAATCGATCTCATCATTTTGCGCCATAGCTGAAC CTGTTGTGGGATGGTGTGCCATTATGTCCATATGTATACACGCATGATAT ATATGTTTGGGCGCTGGTCCAGAGCCGGTACGCCGGTCGAAAAATGATCT CAACCCGGTACAGTTCTTTCTCGTAATTCACTGTGACACCAAATACAACA AGCTCCACCAGAAACTCACATGGCACACTCGCATACACCCACGGCAGCTA TTCATCGATTCATGGAAGAACCACTAGGGAAAAACGCGTTTTGACCTCGT ACCACCGCCACAAAGTTGGTGATTTCCTGAGGGCAGCACGCTGTACCGGT TGTAGACCAAAAAAGCACCCAGTGTAACGGGTTGGGGATTTCTTTCCGAA AGCATACCGGTTGTAGACCACAGAGTACAAATGTTGTAGACCAAACTGTA TCGGTTGTAAACCAATTTGGTAACGGGATCTTCCTACATGCTACGCACCA ACGCACCCTACCGGCGAGCAGAATGTCACTGTTTTCCACAAAGGCTGGAT GTTGCTGGCTCTAACGACCACCACGCTGGATCACTTTGTGGCCCTCCCGC TATGAGAGAACCTGAGGACAAGAACCAGGATACATGCCAGCATCATACCC AACCAAGTGTTGTCGGCATTTTAGGCTTGGTTGGTTGTGTTGTTTCAAGA GGGGCCGGCTAAGTACGACTACCACACAGAGTCAAAGCTGGTAAATTGTC CAAAGAATTGTTCCGATTTATGCGCAGGACACGCAGCCTCTTTACTGCTG CACACAGCAAGAAGAGGGACCTACTGTGTACGATTACCACAAACGACGAT TGATTGAAGCAAGAGATACAAATTGGGTAGTTTCTTCCACTACGTACTAG TCAGTTTTGGTGAAACGGTTTTGGTGCCGAACAGGGGGGGAGAGCAGAGC GGGTGGAGAGCAGGGCGGCAGTCCCTTGCATTTTTTGTGGAATGTCGCTT TTTTTTCAGAACGGTATTGATGGCAGCACCGTAAAATGCGGTCATCATGC AAGAAAGGCCGTGATTGTGGGATAAAAAGGGTGTGTGGGTATACTGTACT ACTGTGCTCCTTGTGCCGTACATGTGGGCAGTAAGAAGCGTTCGATTTTT CCCTTTCGAATGTACATTGCAAACGGAAAGAAGGGTTACAAAAATCTCCC CAACGCTTAGAACAGTCCCGAGAAGAAAGTACATCGGAGCGCGGACGTTT AGGCGCGATCGTCTCGACAATGACGTGATGCTAGCTAATGAAGAGGGGAT GTCACCGTAAAGACCCCCGAGAAGCGAGACTGGTTGATACACCTACACAC TTGTATCCACCACCCGGTGCATTACCGGTGGTGCTGTTTTGATGCAACGT CCACCTCGCACAAACATACCCCGCGCTGACGTATGCGTGTATCAAGAAGC TGAAGACTCACTGGAAAACACCTGTAAAGGAAGTGTTTGTTGGCGAACGA GAGAGGTCTACGCTATAGAGCTCTGTAGCGCACTCAATTCGAAGAATCAT ACCAGTATGTCGTGGAAGAAAATACCTCGGATACCCTGTTTTCCACCGGT AATCTGCCGTTCAGTCCCAAGAGGGAAGGCATTTCCGTGGCGAACACTCG CTCATCGGGTGCTTCGTCGTTGACTGCGAATTTTGGGAGCCCTGTGCGCA ACAGAGCCTTAGTTAACCTCGGCTTCCCCCAACAGAATTTGACATGGATC AAATTTCGTATGTATGGGGCTACCACCTTCCTCGAGGAGAGGCCACGCGC CCATCCCAATCACAATTAGAGGTGGTCAGCTCCTCATATTTCTTGTAGTC CCTCAAAAAGCTCGCACAGCCTTATTGGTTGATTAAGGTGTGGTGATATT CTCCCACCAGCCGTCCACCCACCCCTCGTTCTCCCAGCGCAGTTCTGCGC GCCTTGGTGCCGTCTTGATGTTCAGCTGTCTGCTCTCCAAACACCCTAGC CTCGTTGGTGGGCCCAGTTTTGTCTCCAATAGGTGGCACTTCCTTCGCTG TAGCCGTCATCTCTCTCATCTTTTCCCTAGGTCTAAACAGATCTGCACCT CTACTTTCCCAGCGGTTTCCTCGAATCTCGACTACCCTCAACATCGCTGA ACCCATGATGTACGGAAATTCGATCGAATTATACCAATCGGGGACTTGCA GTCCCGCAGTCGTTGCCTCGGGGACTTCCCTCTCGCACTGGCCCGAAGTA TGTTACCCAGTACGCGTTATGAGTTCACCTCAACTCCATACTGTAGTGCA AACCACTCTCCAGGAGCCTACTAATTGGAAACAACCAAGTGCACAATGTA GCAAATTCGTCACATAGTACGACTCGTGGCCTTCTCCGCCTATGCTACTG TGCCTGCGCTACATTATAGTCGTGGTGCTCAGACCCATGCCAGTCCCCTG TCGTTATCCGTTTTCCCGTTTGTACCGTCTGACGGATCATCGCTGTTGCC TGAACAGCGCCGGTTGAGCTGTGACGTATTTGATTCCATGTCCCTGATGT GGGGCATTTTTATCTGACACTGGCATCATCATTGCGCTGTTAGTCACTCA GCGTATGGTGTGTGCTTTGCATTCCTATCGAATACTGCTTTGCAATCGGG TGCGCGCAGAACCATCGCCATGCCAGCCACCCTGTCTGGGATACTTAAGG CCACTGGCCTGTCATGTCTCAGCTTCCAAACCCCGTGATCAAGTCGTGGC ATTGCCGTTAAAAAACGACATAGTGTGTCTATTTTCCGGTTAGGATTCGG CGGGGACTTGATCGGGTCTGGGCTAGAAGGGTTTATTCAAAAGATATGAC AAAAAGTTGTCATTTCTTCTGGTCAAATTCGAGTGTATATACAAAGGTAG CGACTCCCTGAACATAGCCCAGCAACCTGAGGCCACTTCTTATGGCGGGA GTGTTTTCGAGACATATTTTTTCGTGTACGTCACTTTTTGGGTAAAACCA GGGCGAAAAAATTATGTGTAAGTTATAGCCGAGCCTCCAGAAACATTATC AGTCAGAAATAAATCGATGTTGGAGCTTGGGTGGAGGATGGGAAGGTACT CCCTTCAGCCGGAAAGTCTGTGCCGGTAAGCACGTAATTCTTCGGGGTGA CCTCCGATTTAAAAACGGGTTTTTGCGTTGGATTCCTCGACGTTTTTGCA TCAGATGGGATATTTGGAAAGTATTATTATTCCGATTATGTTCCGAAAAT TAGGATACAAAAATGGGCATGTTCGGATCCTTTTGAGTGGACGCCGTGCA TCGTAAAGGCTGCACACCACTCCTTGATCGCGGGCAGCAGCTCATGCTCG TACCACTCTTGGTAGTACTCAGAGTCAAAGGTGATGTTGACCGAGTACTC CCCGCCTCTCTCGTGCTGTGCCGTAGTCCTCTGCACCTCCTTCATGATGC AAATTCGCCAAATCCCAATCTTGCCATCGAAGTCGCGGAAAGGATCCGGG CGCGACACGGCGCAGATGAAATCACCTTGAAAATATGACTCTTGTGCTAC ACCAAATGAAGCACATCTTCTCCTCTCCCGGGAACATCCGCACCTTCCCT TTGTCGCGGATCCGGTAGAACCACGCTTCGTCGACGTGAATCGTGTTGGG GCCAGTCTTGAACGTTCTGCGATCGCGGGCGACCTGGTCCAAGATGAAGC CCACCCGGTTCTTCTTGTGGTGGAACGAAAGGCTTGGGGTGATGCGCCGC TGAACCCTCGTTGCTCCCATGGCCTTCAGTCGTTTGTGAAGCTTCGAGCT GCCGACTTCGAGGCCCACTTCGGCTAGCTTGGAGGAGAGTTGTTCGACGG TGGGCGTGCGATTGTTCGCGTTGTTTTCCCGAATCCTGGCCTGTTTCGTG GGTGTGAAGTCCGACAGTCGTCCAGATCGTCGTGCTGATCTCAGAGAGAC GATGTGTCCCCTTTCCAGTTGTTCACGTTTGTCCATACTTTCCGAGGGTA GCTATCTCCCACTCCAAACTCTGCCGAAATTTTATGTCCAACGCCCGCCG GGAGTCTCTCTTTGTCCGGAGGGAGAGCCCACGCGTACCGCAGAGCAAGT GCGGTCAGACCTTCCTCGGACAGTTCATAGTTTTTCCCCGATTCGTCAGA CTCTGAGGGCTCGCCATGGGGATGATACGCGCGCTGCGAGCGAGGTGGTT CAAGGTGCCCGCTTGCTGTCGATGTTGTGGGAGTGGTGTGCGGCCTTCAC GGTGCACGGCGTCCACTCCAAAGGATCCGAACATGCCCACTTTTGTATTC TAGTTTTTCGGAACAGAATCGGAATGATGATATTTACAAATATCCCATCT GATGCAAAAAACGTCGAGAAATCGGAGGTCATCTCCAAGAGTTGCGTGCT TGTCGGCACAGACTTTCCGGTTGAAGGTAGAATACATTCAAATATCATGC ATGTTCCACCTCAGCGAGGTGTCTACGTAAGCCCACTGTCCTTTACTCGT GTTGCGGGTTGGCTTTGGCCTGGGCTTTTCGCTCTGCAGATCAAACACGA TATACACATGATGTATGTCATCGGCCGGTTTCGCGAAGCGTGCTTCGAGC TGTAGGTGGAGTGGATTCTGGATTGTCATCATTGTAGCCATCGTCATCCA TGACAATAACGGCAGCAGGATGGGACAGCCTTGCAGCAGCAGCTGAAAGT CGCCATTGCTGCCGACTCTAGGAGCTCGTGCAAGGCTGAAGTCCCATGGC TGTCGCCTCCTCATCGTGTCTAGCTTGGCTGTATCGACGTCATATGTAAT GTTTGCAGATGTAACAGTCAGTATTCATTTTTGCGTGTGATAGATGCGTG AGGTGTGATAGGTGGATGCTGCATGCTGTGTGGTGACTGGCTACCATCAT GATCGTGGGACCCTTCGCATACACGTAGCAAATAGACCCTTCACAATACA TAGATGAGTTTGGGAATTTTGTCTCCAAAGCAACGCAGGTAAAGTGGTGA AGATTTTCGCCTACTTGAGCCGTTTGAGGGGGTCTGGAGAAAATGGGGGT CACGTTCCCTGGAAAATGGGGGTTACGATATATTGTGCAAAAAACATTTC AGGGCGGAAATCGCCAGCAAAATATATATATATCGAGAAAATTCTGCAAC AAGAAGTGATCTAACAGGCGGATTTCTTTTTCCCGAGTGAAATTTTTGTT CGCATCTCTCTGCACTTCATGAGCATGTGTGTATTTGTGGACCATGTACT GCATGCTTTTTGTTCTCCCTTGTTCGAGTGTATACAAAGATGATGGCCAT TCCGTCGATGTGAGTAACTGGAAGTATTTGAATAGACAATGGCCGCCGGA ACTGAATTAACTATGACTGCAAAGGGTCCTTACATGCGAGCATTAACGAG CCAGGGCGAGGGCAACGAGTCTGTGTGCATCTTCATACTTTCCGAAAACC TTGGATGCTTATTGCAAAACACGGCGAGCGCAGCGTGTCCGTGCATGTAT GCAGAGCGAAACTTGAATGTTATATTTGCCTATTCGTATATGCGAGTGTT AGTGAGCCACGGCAAGCGCAGCCACGGCGAGTCCAGCGGTTCCGTGTATG CAGACGAAAGCATGAATGGTAAATCTGCCTACATGCGAACCTACGCGAGT CATGGCGAGCGTGCGGAGTGCATGTGCGTGAGTTAAAGATACGGCCATAA CATCGTCGACGTAATCGTCGCTACTGGTGTAGCCGTGGCCTGTCCTCTAG TATTTGAACATTTGTCGATGAAAACGAATGCGGAAGTCCATGCACGTTTT CCCAGTTTTTGTTTTCCAAAACTGGTAATTGCGACGATGAGATTTCCGCT CCATCTCGTGAAAAAGCAGCCGTAGTAGAACTTCAACCACGAACAATGTT TCGCGCATGATTTATCCAGGCCAGAGCGCTGTGTTCAAGGAGCTGCGTGC ACAAAATAAATCCAGTACAGTATTTAGAGCTGGCCTTGTTCCACCTTCAT TGCAGATCGACGTAGCCAACCGTTTTCTCTGTGCACGGAATAGGGTATTT CTCAACACCCCCCATATGCCATACATAAGGAGAAAGCGGCTCCTCTTAAC AGCGCTAGCTGCATCGCTCAGCCATTCGACAGCTCGGCCGTCCCGGGCCC CTTCCCTATCGGAGGCCAACTGCAGAAGCTTCACGAGCGAGTATCTCGAT GTCCCATCGGCTCCCACACACCATGCCCTCCTATATTCCAACATTGTCCT TTCATGACCCTTTTCCCTGGGAATAAACTCACTTTTTGACTTCTACCGCG CATGGTCCCATGCACCTGCAGTCTATAGTCTATCTCTATTTGCGTGCACT ATGATTTTTTGCTTTTCTTGCGTCTCCTATACAGGAAAGTGGCACCAATC CTCATCCGCTTTCCGTGCGTGCCTTCCTTGGCCCTCCTTGGCCTCCTCAA AATCCTACTGTGGGCTATCATGGGCCCTCTTTCCGCAGCGAGTGATTGAG CTGGGTGCAGGTACCGGAGCGCTATCCGTAGGAATGGCACGTGCCGGGGC TGCCTGGGTAACCTGTACAGATCTCCCCTGCCATTTGAGACACATCCAAG CCACCGTGAAAGCCAACAGCAAGAATACCAATGGCGGCGGCGGCAGCAGC AGCAGCAGCAGCAGCAGAAGCAAAGGAGGGAATGGAATCGGCGTGGGCGA GCAACGCACCGTGGTAGGAGCAACAACAAGGACAGGCGAACATTGTGAAG TGCCGACAACAGGTGCCCGTACGATTGTCGTCGCAATTGCCCCACTTCGA TGGGGAGATGACGTTTCCGATGTCCTCATCTTGGGAGCCGGGGCTTGCCG CGGGTATGGTGGAAACTCCAACAACGGAATATTATCATCACCACCAATAA CAACAGCAGCGGCAGCAATGATGACGAAATCCCACAGCTACGTCGAAACG GAATCGGATCGGATCAGCAATGCAAGTGAAGATAAATCATACTCCATTGG TTCGGGGAACGAGGATGTGGCACCAACTCGATCTGTGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1363:5112..14651-

>mRNA_H-paniculata_contig1363.2241.1 ID=mRNA_H-paniculata_contig1363.2241.1|Name=mRNA_H-paniculata_contig1363.2241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig1363:5112..14651- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAAAGTCGCATCATACTCAATTGTCCTGGACGACAAGGACTGGGT
GGGACAAGTAGCAAGTAAACACATGAATTCTCGCTGGTGTCTCAAACCAA
TCGAGCTCGGAGAGGAGCTAGGGCAGAAGAAGCAGAGGCCGAGGAATGAG
GTACACAGAAGGAAAGAAAGCTCAGATACTGACGACGATGAGGAGAGGGA
GGTGACGGGGAAGGTGCTATGGGACTGTGCCCAGGTGCTGTGGGATTTGC
TGGCAAACCCGCATCCACAAAACGCGTTTTCCGTACGAGGGAAGATGCCG
AAAGTCGCATCATACTCAATTGTCCTGGACGACAAGGACTGGGTGGGACA
AGTAGCAAGTAAACACATGAATTCTCGCTGGTGTCTCAAACCAATCGAGC
TCGGAGAGGAGCTAGGGCAGAAGAAGCAGAGGCCGAGGAATGAGGTACAC
AGAAGGAAAGAAAGCTCAGATACTGACGACGATGAGGAGAGGGAGGTGAC
GGGGAAGGTGCTATGGGACTGTGCCCAGGTGCTGTGGGATTTGCTGGCAA
ACCCGCATCCACAAAACGCGTTTTCCGTACGAGGGAAGCGAGTGATTGAG
CTGGGTGCAGGTACCGGAGCGCTATCCGTAGGAATGGCACGTGCCGGGGC
TGCCTGGGTAACCTGTACAGATCTCCCCTGCCATTTGAGACACATCCAAG
CCACCGTGAAAGCCAACAGCAAGAATACCAATGGCGCGAGTGATTGAGCT
GGGTGCAGGTACCGGAGCGCTATCCGTAGGAATGGCACGTGCCGGGGCTG
CCTGGGTAACCTGTACAGATCTCCCCTGCCATTTGAGACACATCCAAGCC
ACCGTGAAAGCCAACAGCAAGAATACCAATGGCGCAGCAGAAGCAAAGGA
GGGAATGGAATCGGCGTGGGCGAGCAACGCACCGTGGTAGCAGCAGAAGC
AAAGGAGGGAATGGAATCGGCGTGGGCGAGCAACGCACCGTGGTAG
back to top