mRNA_H-paniculata_contig1363.2240.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1363.2240.1
Unique NamemRNA_H-paniculata_contig1363.2240.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1363.2240.1 vs. uniprot
Match: D8LGR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR1_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.900e-33
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:   22 AYDMIVLSEVLYWPALDLLEEDTREPLRSTLVALSGEGTHVVLVYKERWPEREEGFLDMCRPDFEVEAIPLSSVDLPTSTQEDPGSDTIRAVHM 303
            A+D+IVLSEVLYWPALDLL+EDTREPLR TLV LS  GT V+L+YKERWPERE  FL  C   FEV  IP   + LPT++ EDPGS  IRAV M
Sbjct:  247 AFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRTCEASFEVGDIPADLLALPTASTEDPGSAAIRAVVM 340
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BLAST of mRNA_H-paniculata_contig1363.2240.1 vs. uniprot
Match: A0A6H5J7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.350e-33
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:   22 AYDMIVLSEVLYWPALDLLEEDTREPLRSTLVALSGEGTHVVLVYKERWPEREEGFLDMCRPDFEVEAIPLSSVDLPTSTQEDPGSDTIRAVHM 303
            A+D+IVLSEVLYWPALDLL+EDTREPLR TLV LS  GT V+L+YKERWPERE  FL  C   FEV  IP   + +PT++ EDPGS  IRAV M
Sbjct:  237 AFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVGDIPADLLAMPTASTEDPGSAAIRAVVM 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1363.2240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGR1_ECTSI3.900e-3368.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7D3_9PHAE6.350e-3367.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1363contigH-paniculata_contig1363:2772..5051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size413
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1363.2240.1prot_H-paniculata_contig1363.2240.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1363 2846..5039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.7224166-UTR-H-paniculata_contig1363:2771..28451622929080.7224166-UTR-H-paniculata_contig1363:2771..2845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1363 2772..2845 -
1691480724.0604908-UTR-H-paniculata_contig1363:2771..28451691480724.0604908-UTR-H-paniculata_contig1363:2771..2845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1363 2772..2845 -
1622929080.7658591-UTR-H-paniculata_contig1363:5039..50511622929080.7658591-UTR-H-paniculata_contig1363:5039..5051Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1363 5040..5051 -
1691480724.086134-UTR-H-paniculata_contig1363:5039..50511691480724.086134-UTR-H-paniculata_contig1363:5039..5051Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1363 5040..5051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.7342587-CDS-H-paniculata_contig1363:2845..30201622929080.7342587-CDS-H-paniculata_contig1363:2845..3020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 2846..3020 -
1691480724.07102-CDS-H-paniculata_contig1363:2845..30201691480724.07102-CDS-H-paniculata_contig1363:2845..3020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 2846..3020 -
1622929080.7515142-CDS-H-paniculata_contig1363:4887..50391622929080.7515142-CDS-H-paniculata_contig1363:4887..5039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 4888..5039 -
1691480724.0785725-CDS-H-paniculata_contig1363:4887..50391691480724.0785725-CDS-H-paniculata_contig1363:4887..5039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1363 4888..5039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1363.2240.1

>prot_H-paniculata_contig1363.2240.1 ID=prot_H-paniculata_contig1363.2240.1|Name=mRNA_H-paniculata_contig1363.2240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MRLAYDMIVLSEVLYWPALDLLEEDTREPLRSTLVALSGEGTHVVLVYKE
RWPEREEGFLDMCRPDFEVEAIPLSSVDLPTSTQEDPGSDTIRAVHMRRR
RQAVRRAG*
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mRNA from alignment at H-paniculata_contig1363:2772..5051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1363.2240.1 ID=mRNA_H-paniculata_contig1363.2240.1|Name=mRNA_H-paniculata_contig1363.2240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2280bp|location=Sequence derived from alignment at H-paniculata_contig1363:2772..5051- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAGCAAGAAATGCGGCTGGCGTATGACATGATTGTTCTCAGTGAGGT
GCTCTACTGGCCGGCGTTGGATTTACTTGAGGAGGACACTCGGGAGCCTC
TGCGCAGCACCCTTGTGGCGCTGTCCGGAGAAGGCACGCATGTAGTTTTG
GTGTACAAAGAACGGTAAGAGCGGTGAAGATTGAAAGAGCGAGAGAGAGA
GAGAGACAGAGAGAGAGAGAGCTGTAGAAACGTGAAAATAACGAAAAGAG
GAGAAAGAAAATACAACATGAGGGTGCGTGAGGATACGTCGGTGGTTATA
TGCGTACCCTCTTGATAGTTCTTTCAGTTCCGTAAATAAATAGATGTATG
CACTTTTCTCTGGTGGGTTGAATCTCACGCCGCACAAAGCTCCTCGAAAT
ACTGGTGACATCGATCGGAAGCTACGACCTCGTGCCGTCTCGTGAGCTAT
TCGGAATGTCGTTCGCGTTGTTGATGCTGCTTTTATGCTGACTCAAAAGT
CAAGCTAGTCTGTACCTTTTTTTCGGATTTTGTTTTTTGTTTTTCTCTTT
TTCCATTGCAAAATACACGCGCGCACATACACACACATGCACAAGAACAA
AACAGGATGGTTTGGGGAACATGTGCGTCTCTTTGGGCGAGCGGGATTCA
CTTCAAACTGTGAGGTCCAGCTAAGCGGGGTCGTATCTCTCAGTTTTGGA
GTCATGCCCCAAAACCCGTGTATAGCCCAAAAAAAGGAGGGGGGAGAGTG
AAATGCCTCGTATCCCCTCTTTTAGACATGCATAATCTCCGCATGCCCCA
TGACACATATACACTACGGTTTTTTTTCACATACGCTGTCTCTGTATGAT
ACTATTTGTGAGAAACGGCAAGGATGTGACCGCGGGTCTGAACGACTCAT
GTGTTGGCAAATGAAGCTTTTGCCGCATGTACAGCCATCTGTCCGCTGCT
TGTGGATAAGTACCATGTTGTACTGAACAGCATTTGCAGTAAGTAACCAA
ACAAGTAGTTATTTATCGTTGCTGCTTGCTGCAGGGTGCTGGTAATCTGA
GCTCTGGATCATGTGAACGGTGTTCGGCTAAGGTGGCTGTGCACGCGAGC
ATCTGGTCATATTGTTAAAAAGTGAATAAAAAATTTTCAGTCCAAAAAAG
GGGTGGGGTGGGGTTCGGAGGGGGCATGGCTCCAAGAAAACACGGACGAT
ATTCCACAAATGCCAAAAAAAAAAAACGGGGATCGTTCATTTCTTGTATT
TTACGGGCAATCGTTGGCCTTCGATTGGAACAGAGAAACTAGAAATGTTG
CTGAGAGGAGCTGAGAGGGGGTAAAACAAAAACACTGGAGGAGTAGGGAA
AAACGGCTCAACGAAATGTGCATGAATAGGTGCTTACACCTCTATCATCA
CGCCTACAACTCATCAACTCATCCAGTCCCACCCATGAATGCTCACCAGG
TGAACTGAAATTCTGAATGAGCTTAAAGATCATTTGGATATGCAGCTTGG
TAGACCAACAGGATCCTGTTCACATGACAACACCAAAAGTGTGACATACT
CATCACGACCAAATATCGGAACTTTTTGTGCCTCTTCGATCACGCAAAGC
ATGGATTACAGCAACCTTCAAAAGCGAGTAACACTGTATCATTCGTATGT
GTACTGTAGGTAAAACATGAAATAGTCTTCATATGATCTACAGACACTGA
AAATTAAAAAAAGCAACCCTCCATCTTGCTATCTGAAACTGTCATTTTTG
TAGTAATATCACTTTGCGACGGTCAGCTGAACTATAACTTTGAACCTCAT
TTCATAACTCTATTGTACCCATGTTGAGATTATGCAGCTGGCTTTTAACT
ATAGCTTTATGCACTTATCAGGATAATTTAATTTAAAAGGGGTAAAAACG
GAAAGAGGGTCATACCGAATGATCAAATATACCTACGAGTGTCGTGCTTC
CCTCGTCCCACGTATGACGACATTTTCCAAAACACTAATTTCACGTGTGA
CCTCCACAAACTCCCCACACCCCTCAAGCAGGTGGCCGGAGCGTGAAGAG
GGCTTCCTCGATATGTGCAGGCCAGATTTCGAGGTAGAGGCGATCCCCTT
GAGTTCTGTTGACCTGCCAACAAGTACGCAGGAGGACCCGGGGTCGGACA
CGATCCGAGCAGTGCACATGCGGCGCCGACGGCAAGCCGTGCGTCGTGCT
GGATGAAGAAAGCGCATCGCCTGTTTTGACCGTTTGACAGAAAGATGTAT
ACGTGGATTACCACCCGTGGCAACAACGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1363:2772..5051-

>mRNA_H-paniculata_contig1363.2240.1 ID=mRNA_H-paniculata_contig1363.2240.1|Name=mRNA_H-paniculata_contig1363.2240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig1363:2772..5051- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCTGGCGTATGACATGATTGTTCTCAGTGAGGTGCTCTACTGGCC
GGCGTTGGATTTACTTGAGGAGGACACTCGGGAGCCTCTGCGCAGCACCC
TTGTGGCGCTGTCCGGAGAAGGCACGCATGTAGTTTTGGTGTACAAAGAA
CGATGCGGCTGGCGTATGACATGATTGTTCTCAGTGAGGTGCTCTACTGG
CCGGCGTTGGATTTACTTGAGGAGGACACTCGGGAGCCTCTGCGCAGCAC
CCTTGTGGCGCTGTCCGGAGAAGGCACGCATGTAGTTTTGGTGTACAAAG
AACGGTGGCCGGAGCGTGAAGAGGGCTTCCTCGATATGTGCAGGCCAGAT
TTCGAGGTAGAGGCGATCCCCTTGAGTTCTGTTGACCTGCCAACAAGTAC
GCAGGAGGACCCGGGGTCGGACACGATCCGAGCAGTGCACATGCGGCGCC
GACGGCAAGCCGTGCGTCGTGCTGGATGAGTGGCCGGAGCGTGAAGAGGG
CTTCCTCGATATGTGCAGGCCAGATTTCGAGGTAGAGGCGATCCCCTTGA
GTTCTGTTGACCTGCCAACAAGTACGCAGGAGGACCCGGGGTCGGACACG
ATCCGAGCAGTGCACATGCGGCGCCGACGGCAAGCCGTGCGTCGTGCTGG
ATGA
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