mRNA_H-paniculata_contig13621.2237.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13621.2237.1
Unique NamemRNA_H-paniculata_contig13621.2237.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: D7FVP4_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP4_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 6.800e-102
Identity = 174/325 (53.54%), Postives = 214/325 (65.85%), Query Frame = 1
Query:  175 RWLHPVDSALEGVPSSLFTF--RAGSPRRPR-RNQSNGDEDGNGPGDYGGNTDGVSLQAGLIEETDLAGVSALLVESFPQGVYLADGDFSELEGVIFGAPIEMTNKYLNAVAYYEIFYALKARCGKRLVKGDFVLTSDALVLAVRTPTDTTEGESR--------------------DIVAVVEVDLRQPDGTVPSNWPFRTPFTQR-----------QEPQPPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYESMEQYDAPMWMRKLFGLPTIRYQVKHLKKRKSGFVEAAEES 1047
            R LHP  S  +GVPSSLFTF  R    + P+ + ++ GD          G  +   L+AGL++E+DL  VSALLVE F  GV LADG+F+ LE VI GAPI+MTN Y+ AVAY EI Y+L++RCG RL +GDF  +SDALVLAVR P  T+   S                     ++VAVVE+ +R+PDG++P NWPF  P+ +            ++P   WQPYMCNLAVAE+YRG G+GKQLVRLCEH+ KN WGYERMYLHVDL DPA T LY+SMGYE +E+YDAP+WMRKLFG PTIRYQVK  K RK     AA E+
Sbjct:   60 RLLHPRGSGPDGVPSSLFTFQPRTTPKKYPQEKKRAGGDSASTSSAPVAGEEN--VLRAGLMDESDLPDVSALLVEVFEPGVVLADGEFTGLESVILGAPIDMTNNYMKAVAYNEILYSLRSRCGNRLTRGDFDRSSDALVLAVRGPPSTSGKSSSTPVTQDGDADGGVGXXXXAAELVAVVELTIRKPDGSLPLNWPFPAPWRREARDLIVPLLYIEKPPEQWQPYMCNLAVAEEYRGNGYGKQLVRLCEHVAKNSWGYERMYLHVDLGDPAATGLYSSMGYEGIEKYDAPLWMRKLFGWPTIRYQVKRFKGRKGAPALAAAEA 382          
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: A0A6H5KVK2_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK2_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.390e-70
Identity = 170/407 (41.77%), Postives = 204/407 (50.12%), Query Frame = 1
Query:   13 MKLPLGGSLVAP-HASSLSALPVAIRSPCCWISSKPLNAPKFNRRKS----------------PCHHDRQVRWLHPVDSALEGVPSSLFTF---RAGSPRRPRR--------NQSNGDEDGNGPGDYG------GNTDGVSLQAGLIEETDLAGVSALLVESFPQGVYLADGDFSELEGVIFGAPIEMTNKYLNAVAYY-----------------------EIFYALKARCGKRLVKGDFVLTSDALVLAVRTPT--------------------DTTEGESRDIVAVVEVDLRQPDGTVPSNWPFRTPFTQRQEPQPPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYESMEQYDAPMWMRKLFGLPTIRYQVKH 1002
            M L LGG L+A  HA+  +++P   R P    S+  +NA    R  S                P       R LHP  S  EGVPSSLFTF   RA    RP            ++G EDG G            + D  +L   L+EE+DL  VSALL E F   + +   D +EL        +E  NKYL  +AY                        +I  ++K+RCGKRL +GDF LTSDALVLAVR                       D   G++ DIVAVVE+ LRQPDG  P N PF  P T        W+PYMCNLAVAE YRG G+GKQLVRLCE + K  WGYERMYLHVD   PA T+LY+SMGYE MEQ+  P W++KL GL  I YQVKH
Sbjct:    1 MLLNLGGPLLASSHAALYASVPSYGRLPPGVESAARMNAITQQRLGSSXXXXXXXXXXXXXXRPSSASSGPRLLHPSGSGPEGVPSSLFTFQPPRATPIERPTEVAPGTTEGGHNSGSEDGAGRSAAAVITKAVASADEEALHVKLVEESDLPDVSALLAEVFEPNILI---DPAELRSESSVERLEKANKYLKEMAYKKVGGTHPREERECPLVVWSDTSCQILRSIKSRCGKRLTRGDFALTSDALVLAVRDSRPNGSARATSAVPELGGDGAGDAGGGDAGDIVAVVELCLRQPDGWFPINGPF-VPMTG-------WEPYMCNLAVAEKYRGNGYGKQLVRLCEGVAKKHWGYERMYLHVDAASPAATSLYSSMGYEIMEQFQPPSWVKKLLGLRDILYQVKH 396          
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: D7FVP3_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP3_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.420e-57
Identity = 105/189 (55.56%), Postives = 123/189 (65.08%), Query Frame = 1
Query:  496 VAYYEIFYALKARCGKRLVKGDFVLTSDALVLAVRTPT--------------------DTTEGESRDIVAVVEVDLRQPDGTVPSNWPFRTPFTQRQEPQPPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYESMEQYDAPMWMRKLFGLPTIRYQVKH 1002
            +AY +I  ++K+RCGKRL +GDF LTSDALVLAVR                       D   G++ DIVAVVE+ LRQPDG +P N PF  P T        W+PYMCNLAV E YRG G+GKQLVRLCE + K  WGYERMYLHVD   PA T+LY+SMGYE MEQ+  P W++KL GL  I YQVKH
Sbjct:    1 MAYKKILRSIKSRCGKRLTRGDFALTSDALVLAVRDSRPNGSARATSAVPELGGDGAGDGGGGDAGDIVAVVELCLRQPDGWLPINGPF-VPMTG-------WEPYMCNLAVTEKYRGNGYGKQLVRLCEGVAKKHWGYERMYLHVDAASPAATSLYSSMGYEIMEQFQPPSWVKKLLGLRDILYQVKH 181          
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: A0A836CNC1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNC1_9STRA)

HSP 1 Score: 167 bits (422), Expect = 4.380e-44
Identity = 92/228 (40.35%), Postives = 131/228 (57.46%), Query Frame = 1
Query:  331 SLQAGLIEETDLAGVSALLVESFPQGVYLA-DGDFSELEGVIFGAPIEMTNKYLNAVAYYEIFYALKARCGKRLVKGDFVLTSDALVLAVRTPTDTTEGESRDIVAVVEVDLRQPDGTVPSNWPFRTPFTQRQEPQPPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYE-SMEQYDAPMWMRKLFGLPTIRYQVKHLK 1008
            +L  GLIE+ D+A  + LLV  FP  V L+ +  F E E  +   P+ + N YL   +YYEI   +K R G++L+      +  A++L V  P+      +  I+AVVE++LR PDGT+P NWP    F + Q  +   +PY+CNLAV+E +RG+G GKQLVRL EHIV+N W    +YLHVD  +     LY SMGY  +   +  P W+  L  +P + Y  K L+
Sbjct:   26 NLVLGLIEDRDVAQAAELLVNCFPFEVSLSTEAGFKEWEVQVLRIPVGLMNAYLRGFSYYEILLGIKLRMGEQLLNPQIDASGSAMILGVADPS------TNQIIAVVELELRIPDGTLPGNWPLPR-FIKGQSAESHSEPYLCNLAVSERWRGQGIGKQLVRLSEHIVRNCWAGSCLYLHVDPSNEIALQLYQSMGYRPAAPTHTLPPWLLSLLAVPQVTYFSKSLR 246          
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: A0A7S2EB23_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EB23_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.390e-26
Identity = 90/273 (32.97%), Postives = 127/273 (46.52%), Query Frame = 1
Query:  211 VPSSLFTFRAGSPRRPRRNQSNGDEDGNGPGDYGGNTDGVSLQAGLIEETDLAGVSALLVESFPQGVYLADGDFSELEGVIFGAPIEMTNKYLNAVAYYEIFYALKARCGKRLVKGDF-------VLTSDA--------LVLAVRTPTDTTEGESRDIVAVVEVDLRQPDGTVPSNWPF----------RTPFTQRQEPQPPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYESMEQYDAPMW 954
            VP S F+        P   ++  DE+GN   D   N +   +   L EE DL  +S L +++F     +  GD S +E  +   P+ M N Y  AVAY E+   +++R   RL K          V  SDA        L LA+  P    + +  D+VA VE+ L+  D  +P + P+           T F  R   +   QPY+CNL V+E  RG+  GK LVR  E I    WGY ++YLHVDLD+ A   LY S G++ +     P W
Sbjct:   62 VPISEFSSDLSFLSTPESYRACIDENGNLQSDSSNNKEDPYVLC-LAEEDDLPDISQLTIDAFDALAIVLGGDLSGIEKALLEPPVGMWNAYTGAVAYAEVLQGIRSRMKDRLNKPSILPPPVTDVSASDATKIAGNSSLFLAIARPKAGGQ-KGIDVVATVELRLQPTDAKIPFSQPWVDAVERKIAKATGFDARTVDKT-LQPYLCNLCVSEQMRGRKLGKALVRCVEKITTETWGYSKLYLHVDLDNVAALNLYRSEGFKDVGFRWNPFW 331          
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: A0A6V1SJC1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SJC1_HETAK)

HSP 1 Score: 108 bits (271), Expect = 1.500e-24
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  622 GESRDIVAVVEVDLRQPDGTVPSNWPF-RTPFTQRQEPQPPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYESMEQYDAPMWMRKLFGLPTIRY 990
            G S  + A+VE+DL+ PDGT+    P  R P+       P  +PY+ NL VA   RG+ +G++LV++CE IV+ +WG+  +YLHVD  +     LY  + Y  ++ YD P+W R +FGLP IR+
Sbjct:    1 GSSTPLRALVELDLKAPDGTLQPTLPVTRLPWLPA---DPGARPYLSNLCVAPGARGRRYGQKLVQVCEFIVQKEWGFNELYLHVDEKNDVAWNLYEQLNYRPLKSYDTPLWQRLIFGLPNIRF 121          
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: A0A7S0AJY5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AJY5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.000e-23
Identity = 71/227 (31.28%), Postives = 103/227 (45.37%), Query Frame = 1
Query:  328 VSLQAGLIEETDLAGVSALLVESFPQGVYLADGDFSELEGVIFGAPIEMTNKYLNAVAYYEIFYALKARCGKRLVKGDF-------------------VLTSDALVLAVRTPTDTTEGESRDIVAVVEVDLRQPDGTVPSNWPFRTPFTQRQEP---------QPPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYE 924
            V    G+ EE DL  +S L +++F        GD S  E  I    + + N Y    AY E+   L++R   +L K D                    +  + +L+LA+  P    E  + D +A VE+ L+  D  +P + P+     +R                QPY+ NL VAE  RG+  GK LVR  E I  + WGYE++YLHVDL++ A   LY S GY+
Sbjct:   63 VPYVLGIAEEDDLPDISRLTIDAFGDVAITLGGDLSSFERAILSPGVALWNGYTGYAAYTEVLSGLRSRMKDKLEKVDLASPLVAKDGVDMPEEDSEQLAANSSLILALGRPKPEGEPGTIDAIATVELRLQPTDAKIPFSQPWVDSVERRAAKALGVDGPARDDTLQPYLSNLCVAESARGRRIGKALVRCLERIACDTWGYEKIYLHVDLENAAAYNLYKSEGYQ 289          
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: A0A448ZI05_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI05_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.630e-22
Identity = 79/267 (29.59%), Postives = 116/267 (43.45%), Query Frame = 1
Query:  313 GNTDGVS-LQAGLIEETDLAGVSALLVESFPQGVYLADGDFSELEGVIFGAPIEMTNKYLNAVAYYEIFYALKARCGKRLVKGDFVLT-------------------SDALVLAVRTPTDTTEGESRDIVAVVEVDLRQPDGTVPSNWPFRTPFTQRQEPQ----------------PPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYESMEQYDAPMWMRKLFGLPTIRYQVKHL 1005
            G++DG    + GL+EE +L  +   ++ +F         D +  E ++     E  N Y   VA+ E+F   K R   R  +   ++                     D+LVL +  P++     S +++A +E+ L+  D  +P    F  P+  R E +                   QPY+ NL V E +RG+  G+ LVR  E+I KN WGY RMYLHVD D+PA   LY S GY  +     P W     G   I Y VK L
Sbjct:   78 GSSDGSDRYELGLVEEEELPDLCKFIITAFGAEAIQLASDMNSFERMLLNPAAEFLNGYSGLVAFAEVFSGTKQRLADRFQENPSLVDISAPDLKGLSREEQIRKAERDSLVLILGKPSNDAS-RSIEVIASIELRLQPCDAKIP----FSIPWLDRVERRIGSLIGLGNNGNGAGTNDMQPYLSNLCVDEKFRGQKIGRGLVRCVENIAKNSWGYNRMYLHVDEDNPAALNLYKSEGYSDVGHRWNPFWSG---GASEIGYYVKSL 336          
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: A0A7S2FS12_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS12_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.130e-15
Identity = 51/132 (38.64%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  616 TEGESRDIVAVVEVDLRQPDG-TVPSNWPFRTPFTQRQEPQPPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYESMEQYDAPMWMRKLFGLPTIRYQVKHLK 1008
            T     ++V ++EV ++   G T P   PF  P   ++    P  PY+ NL +A+  R KG+ K+LVR CE   +  WGY+R YLHVDLD P    LY  MGY  + +   P WM+ + G+  +RY  K LK
Sbjct:  144 TNDSENELVGLIEVSMQPQSGQTAP---PFPVPAFLKRLSVRPLFPYISNLVIADKERRKGYAKRLVRACEQQARG-WGYDRCYLHVDLDYPPAAALYEGMGYGVVRE--DPSWMKTVNGV-ALRYMSKALK 268          
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Match: A0A7S0L948_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L948_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 9.150e-10
Identity = 50/168 (29.76%), Postives = 74/168 (44.05%), Query Frame = 1
Query:  523 LKARCGKRLVKGDFVLTSDALVLAVRTPTDTTEGESRDIVAVVEVDLRQPDGTVPSNWPFRTPFTQRQEPQPPWQPYMCNLAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNSMGYESMEQYD------APMWMRKLFGLPTI-RYQVKHL 1005
            L+ R G RL       + +A +L +    +T       + A  E+ L+  DG +P+   F  P             Y+ N  VA  YR +  G  L+R CE +V+  W Y  ++LHVD+ + A   LY   GY  + QYD      AP    +   +P + RY VK L
Sbjct:   84 LQWRLGSRLASPGVHASLEASLLLLVQDVNTGA-----LAAGAELSLQPTDGALPAE--FAVPALFSLHTAVSLGAYLSNFVVARGYRRQRLGSDLLRACETLVRYDWQYSELFLHVDVRNKAAMHLYEQAGYVPLTQYDRLAPPSAPTADARALSMPVLNRYHVKSL 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13621.2237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FVP4_ECTSI6.800e-10253.54N-acetyltransferase domain-containing protein n=2 ... [more]
A0A6H5KVK2_9PHAE3.390e-7041.77N-acetyltransferase domain-containing protein n=1 ... [more]
D7FVP3_ECTSI1.420e-5755.56N-acetyltransferase domain-containing protein n=1 ... [more]
A0A836CNC1_9STRA4.380e-4440.35N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S2EB23_9STRA1.390e-2632.97Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6V1SJC1_HETAK1.500e-2441.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0AJY5_9STRA1.000e-2331.28Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A448ZI05_9STRA1.630e-2229.59N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S2FS12_9STRA2.130e-1538.64Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0L948_9EUKA9.150e-1029.76Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13621contigH-paniculata_contig13621:1791..5232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.8
Seed ortholog evalue2e-85
Seed eggNOG ortholog2880.D7FVP4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Acetyltransferase (GNAT) family
EggNOG OGs2CZCN@1,2S9Q8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1695
Cds size1065
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.5992165-UTR-H-paniculata_contig13621:1790..18021622929078.5992165-UTR-H-paniculata_contig13621:1790..1802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13621 1791..1802 +
1691480723.9112825-UTR-H-paniculata_contig13621:1790..18021691480723.9112825-UTR-H-paniculata_contig13621:1790..1802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13621 1791..1802 +
1622929078.772339-UTR-H-paniculata_contig13621:4614..52321622929078.772339-UTR-H-paniculata_contig13621:4614..5232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13621 4615..5232 +
1691480723.9673247-UTR-H-paniculata_contig13621:4614..52321691480723.9673247-UTR-H-paniculata_contig13621:4614..5232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13621 4615..5232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.6908398-CDS-H-paniculata_contig13621:1802..21831622929078.6908398-CDS-H-paniculata_contig13621:1802..2183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 1803..2183 +
1691480723.923594-CDS-H-paniculata_contig13621:1802..21831691480723.923594-CDS-H-paniculata_contig13621:1802..2183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 1803..2183 +
1622929078.7110522-CDS-H-paniculata_contig13621:2705..28221622929078.7110522-CDS-H-paniculata_contig13621:2705..2822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 2706..2822 +
1691480723.9336698-CDS-H-paniculata_contig13621:2705..28221691480723.9336698-CDS-H-paniculata_contig13621:2705..2822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 2706..2822 +
1622929078.7254426-CDS-H-paniculata_contig13621:3079..32721622929078.7254426-CDS-H-paniculata_contig13621:3079..3272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 3080..3272 +
1691480723.9429412-CDS-H-paniculata_contig13621:3079..32721691480723.9429412-CDS-H-paniculata_contig13621:3079..3272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 3080..3272 +
1622929078.7380812-CDS-H-paniculata_contig13621:3826..39711622929078.7380812-CDS-H-paniculata_contig13621:3826..3971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 3827..3971 +
1691480723.9512231-CDS-H-paniculata_contig13621:3826..39711691480723.9512231-CDS-H-paniculata_contig13621:3826..3971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 3827..3971 +
1622929078.757393-CDS-H-paniculata_contig13621:4385..46141622929078.757393-CDS-H-paniculata_contig13621:4385..4614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 4386..4614 +
1691480723.9593394-CDS-H-paniculata_contig13621:4385..46141691480723.9593394-CDS-H-paniculata_contig13621:4385..4614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13621 4386..4614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13621.2237.1prot_H-paniculata_contig13621.2237.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13621 1803..4614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13621.2237.1

>prot_H-paniculata_contig13621.2237.1 ID=prot_H-paniculata_contig13621.2237.1|Name=mRNA_H-paniculata_contig13621.2237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=355bp
MKLPLGGSLVAPHASSLSALPVAIRSPCCWISSKPLNAPKFNRRKSPCHH
DRQVRWLHPVDSALEGVPSSLFTFRAGSPRRPRRNQSNGDEDGNGPGDYG
GNTDGVSLQAGLIEETDLAGVSALLVESFPQGVYLADGDFSELEGVIFGA
PIEMTNKYLNAVAYYEIFYALKARCGKRLVKGDFVLTSDALVLAVRTPTD
TTEGESRDIVAVVEVDLRQPDGTVPSNWPFRTPFTQRQEPQPPWQPYMCN
LAVAEDYRGKGFGKQLVRLCEHIVKNQWGYERMYLHVDLDDPAPTTLYNS
MGYESMEQYDAPMWMRKLFGLPTIRYQVKHLKKRKSGFVEAAEESERHEA
AGLR*
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mRNA from alignment at H-paniculata_contig13621:1791..5232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13621.2237.1 ID=mRNA_H-paniculata_contig13621.2237.1|Name=mRNA_H-paniculata_contig13621.2237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3442bp|location=Sequence derived from alignment at H-paniculata_contig13621:1791..5232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCGCGATAAGATGAAGCTACCCTTGGGGGGCTCACTAGTTGCACCACA TGCCTCTTCATTGTCTGCGTTACCAGTAGCCATTCGTTCCCCCTGTTGCT GGATTTCGTCAAAACCACTGAATGCACCGAAATTCAACAGGCGAAAATCA CCTTGTCATCATGATAGACAAGTGCGCTGGCTGCATCCTGTAGACAGCGC GCTGGAGGGGGTGCCTAGCAGCCTTTTCACTTTTCGGGCAGGCTCTCCCC GGCGTCCACGGCGAAATCAATCTAATGGAGACGAAGATGGCAATGGTCCC GGAGATTATGGTGGTAATACCGATGGCGTGTCCCTGCAGGCTGGTCTTAT AGAGGAAACGGACCTTGCGGGAGTGTCGGCTTTGCTAGTTGAGGTGAGAT AAGACTAGGTTGGTTCAAAGCAAGGTTAGAACAGACAGACAGGCAGACAG ACAGGCAGACAGACAGACAGATAGACAGACTGGCTGACAGACAGACAATA TAGTGCACTGAGGTGCAGTAGGCTCATGGCTATAGTCCTGCGGTATCATT TAACCCGGATCCGTTTCTTATTTTAGATATCGAGAAAACCATTTGCTCAA CTATTATGGTGCGGGAAGCGCGGGGCGTAGGGGCTTTTGGCACACGAGGC CCTTAGGCCGAGATGCACTTGCACCCGTCCATCCATGCTGAAAATATCAT ACACGGGCCTTATAAACCCTGTGCTAAAGACAATATTCAACAGCGTACTG ATTCTGTGGTCGTTTCAAAACTGCCTGCTTCTCTGATTTGGTCTAATTTT CCTGATATGTGTACAGAGTTGGGATTTCAGGTTGACTTCACAACGTCCAC ATCGGTACAAACAAGTTGTTTTCCCCTCACGTTCGCCTCTGTCCATGTCG ATCCTTCTCATGCAGTCCTTTCCGCAAGGCGTGTATCTCGCGGATGGAGA TTTTAGTGAGCTGGAAGGGGTGATTTTTGGAGCGCCGATCGAAATGACGA ACAAGTACTTGAACGCAGTGGCCTACTATGAGGTGCGCTTCGAGGGAACC ACTGGATACTACAGCGACCGTGTTCTCTATCTCTTGGAACATTTGCCCTG TGAAGAGATACTATACTCTTTGTAGTGGCGGGGCAACAAATAAGCGTGAA ACGCAGGCGAAATGCATAGCTGTATGCTTGTTTACGACGATGTATCGTAG CAATCTCGTAGCACGGCGATGAGTATGCATGCACAAGGTCACATACTCCC CGCCCTTGCCGCACGCCGGTTGTCCCTATTTTATCGTAGATTTTCTACGC GCTCAAGGCTCGATGCGGCAAACGTCTAGTGAAAGGAGATTTCGTTCTTA CTAGCGACGCCCTCGTGCTGGCTGTTAGAACTCCCACCGATACGACGGAA GGAGAAAGCCGCGATATCGTGGCGGTGGTAGAAGTAGACCTTCGGCAGCC GGATGGCACCGTGCCATCAAACTGGCCGTTCCGTAATCCATGGCGACCAA AAGTGAGCAAGCAGAAGCTCAGCGGTGAACTTGGGCCAAACACAGATTAT TTTCCCATCGCGCCCATCACTCTAGATGACAACCACAGGATGTGGCACCG ATACCATTGATTGTTATTATTTCTTGCAAAGAGTGGCAGCCTCCAGTCTT ACCTTCTCGAGGATGGAAGCTGATATTTTGGGGTTGCGCATGAAGCTAAT TCCTACCTAATTGAAGTTCGCCAGGCACGAACACTGCTGGCTAATAGGAA CCAAGTAGCTCCTCGTGACGCGGTGGCGTCGCAGGTAACTCAGATGAAAG CTCGGTCAAACTGCATAACACAGCCTCTTCTTACTAAATACATGTATTTC GGAATAGGAATGTGCGGACTATCGCGTGGATAATAGTACAGCATCTTCGT ACGCTAACCATACTTGATTCTGCTTATTGAAAATATGGACATATCAGTTG TGTATCTGCCTATTGACAATATGCACACACTGGGGAGGCACACCCTGTCG CTGATGTGCTAAAGGTTCAACTGATGAGTATTTCAGGTACGCCCTTTACC CAACGGCAGGAGCCACAGCCACCCTGGCAGCCGTACATGTGCAACCTGGC CGTTGCCGAAGATTACAGAGGCAAAGGATTCGGGAAGCAGCTTGTGCGAC TTTGTGAACACATCGTGAAAAACCAATGGGGGTGAGTTTGCGCGACACAA GCATATTTTTCTGGTCTTAAGCTGTCCTAACCACGCTCAAAACCACATAC AAAAGTTGTCAGGTTCGCTGTCAAAACTTTCACATAACACCAAGGTTATG CAATTGAAACTCAAGTCGTTTACTCCACATTTTCGAATTACTACGAAACG TTTGTTGACAGCAAGTATGGTGGTGAAGAAAAAATCTCGTTACATTTTCA CGTCAGTTGTGGGTTATTATTCCTCGCTGTAGATGGTGGCATTTCGCTGC AGTGTGTGCGCTGAATTGAGCCGAAGAGTAAGCAGCCACGCATAATGAAC TCGTTATAAAAACATCTCACCAGCTTCTGGAATATGTGGCGACGTCATAA CGCACAACACAAAATGCGGATTCGCGATCATGCCCTTGTCCACAGATACG AACGGATGTACCTGCACGTGGACCTTGACGACCCAGCGCCGACAACACTG TACAACTCTATGGGCTATGAGAGTATGGAGCAGTACGACGCTCCAATGTG GATGAGGAAGCTCTTTGGTTTGCCCACCATTCGATATCAGGTCAAACACT TGAAAAAACGCAAGTCGGGTTTTGTAGAAGCAGCGGAAGAGAGTGAACGA CACGAAGCTGCTGGGCTACGGTAGGGCTTTTGCGTCATGCTTTTCGCTTC AAGATCTATTGTCGCAAACACCGATGTGTACGTGGCCAGCAAATATTGTG AATTCTTCATGGTCGGATGTAAACCCCATGCAGCGTTTCCATACTTGGAA AAAGCGAATGCATGTGGTTGTCTGAGGTTGCCCAGAAATAAACCGCCCTA AAGAACAATCGTCGTTTTTCCACACCAGTCAGCCTACGAATCTGTTCGCG TTCATGTTTAGGGGTGGCTTCTACCGTAACCACTAAACGCTTTGTAGCGA TTACTTGCCGTAGGCTCCAGACGAATTAATAGCGCTTGCGGAGTAGTGGG TTGTATTCGCTGCAGCAATGGGGGGCTCTGAACCATGTGCGTCGACGTTT GATGCTAAGCTATTCCCGGACGACCTCCTTGATGAAGGACAAAGTGCGGT GGACACCGCTTAATCCACCATCGCCCAGAGATCACCGCATAGAAATATCC ACTTCGAGTAAAGCAAATTGAAGTCATCTCGTGCCCCGTGATAGATTTTT AGTACATTATGGAAACGGAAGAAAAGACAAATTGCGTTCACCATGGGTAG ATTTGCGTGCGCGGGCACGCGGGCACAGGCACTACACATCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig13621:1791..5232+

>mRNA_H-paniculata_contig13621.2237.1 ID=mRNA_H-paniculata_contig13621.2237.1|Name=mRNA_H-paniculata_contig13621.2237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2130bp|location=Sequence derived from alignment at H-paniculata_contig13621:1791..5232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTACCCTTGGGGGGCTCACTAGTTGCACCACATGCCTCTTCATT
GTCTGCGTTACCAGTAGCCATTCGTTCCCCCTGTTGCTGGATTTCGTCAA
AACCACTGAATGCACCGAAATTCAACAGGCGAAAATCACCTTGTCATCAT
GATAGACAAGTGCGCTGGCTGCATCCTGTAGACAGCGCGCTGGAGGGGGT
GCCTAGCAGCCTTTTCACTTTTCGGGCAGGCTCTCCCCGGCGTCCACGGC
GAAATCAATCTAATGGAGACGAAGATGGCAATGGTCCCGGAGATTATGGT
GGTAATACCGATGGCGTGTCCCTGCAGGCTGGTCTTATAGAGGAAACGGA
CCTTGCGGGAGTGTCGGCTTTGCTAGTTGAGATGAAGCTACCCTTGGGGG
GCTCACTAGTTGCACCACATGCCTCTTCATTGTCTGCGTTACCAGTAGCC
ATTCGTTCCCCCTGTTGCTGGATTTCGTCAAAACCACTGAATGCACCGAA
ATTCAACAGGCGAAAATCACCTTGTCATCATGATAGACAAGTGCGCTGGC
TGCATCCTGTAGACAGCGCGCTGGAGGGGGTGCCTAGCAGCCTTTTCACT
TTTCGGGCAGGCTCTCCCCGGCGTCCACGGCGAAATCAATCTAATGGAGA
CGAAGATGGCAATGGTCCCGGAGATTATGGTGGTAATACCGATGGCGTGT
CCCTGCAGGCTGGTCTTATAGAGGAAACGGACCTTGCGGGAGTGTCGGCT
TTGCTAGTTGAGTCCTTTCCGCAAGGCGTGTATCTCGCGGATGGAGATTT
TAGTGAGCTGGAAGGGGTGATTTTTGGAGCGCCGATCGAAATGACGAACA
AGTACTTGAACGCAGTGGCCTACTATGAGTCCTTTCCGCAAGGCGTGTAT
CTCGCGGATGGAGATTTTAGTGAGCTGGAAGGGGTGATTTTTGGAGCGCC
GATCGAAATGACGAACAAGTACTTGAACGCAGTGGCCTACTATGAGATTT
TCTACGCGCTCAAGGCTCGATGCGGCAAACGTCTAGTGAAAGGAGATTTC
GTTCTTACTAGCGACGCCCTCGTGCTGGCTGTTAGAACTCCCACCGATAC
GACGGAAGGAGAAAGCCGCGATATCGTGGCGGTGGTAGAAGTAGACCTTC
GGCAGCCGGATGGCACCGTGCCATCAAACTGGCCGTTCCATTTTCTACGC
GCTCAAGGCTCGATGCGGCAAACGTCTAGTGAAAGGAGATTTCGTTCTTA
CTAGCGACGCCCTCGTGCTGGCTGTTAGAACTCCCACCGATACGACGGAA
GGAGAAAGCCGCGATATCGTGGCGGTGGTAGAAGTAGACCTTCGGCAGCC
GGATGGCACCGTGCCATCAAACTGGCCGTTCCGTACGCCCTTTACCCAAC
GGCAGGAGCCACAGCCACCCTGGCAGCCGTACATGTGCAACCTGGCCGTT
GCCGAAGATTACAGAGGCAAAGGATTCGGGAAGCAGCTTGTGCGACTTTG
TGAACACATCGTGAAAAACCAATGGGGGTACGCCCTTTACCCAACGGCAG
GAGCCACAGCCACCCTGGCAGCCGTACATGTGCAACCTGGCCGTTGCCGA
AGATTACAGAGGCAAAGGATTCGGGAAGCAGCTTGTGCGACTTTGTGAAC
ACATCGTGAAAAACCAATGGGGATACGAACGGATGTACCTGCACGTGGAC
CTTGACGACCCAGCGCCGACAACACTGTACAACTCTATGGGCTATGAGAG
TATGGAGCAGTACGACGCTCCAATGTGGATGAGGAAGCTCTTTGGTTTGC
CCACCATTCGATATCAGGTCAAACACTTGAAAAAACGCAAGTCGGGTTTT
GTAGAAGCAGCGGAAGAGAGTGAACGACACGAAGCTGCTGGGCTACGGTA
GATACGAACGGATGTACCTGCACGTGGACCTTGACGACCCAGCGCCGACA
ACACTGTACAACTCTATGGGCTATGAGAGTATGGAGCAGTACGACGCTCC
AATGTGGATGAGGAAGCTCTTTGGTTTGCCCACCATTCGATATCAGGTCA
AACACTTGAAAAAACGCAAGTCGGGTTTTGTAGAAGCAGCGGAAGAGAGT
GAACGACACGAAGCTGCTGGGCTACGGTAG
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