mRNA_H-paniculata_contig13616.2234.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13616.2234.1
Unique NamemRNA_H-paniculata_contig13616.2234.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13616.2234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13616contigH-paniculata_contig13616:3649..4125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.1780512-CDS-H-paniculata_contig13616:3648..41251622929078.1780512-CDS-H-paniculata_contig13616:3648..4125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13616 3649..4125 +
1691480723.6854334-CDS-H-paniculata_contig13616:3648..41251691480723.6854334-CDS-H-paniculata_contig13616:3648..4125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13616 3649..4125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13616.2234.1prot_H-paniculata_contig13616.2234.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13616 3649..4125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13616.2234.1

>prot_H-paniculata_contig13616.2234.1 ID=prot_H-paniculata_contig13616.2234.1|Name=mRNA_H-paniculata_contig13616.2234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
HDPPKKLILSPLGPWDWRSVYNSYLPHFLRSMRRRWRLRLPHYHVVVGLS
AVGHRRGRPTCSVGRRCRSPPFRRCPCRPHHLPLDTFSRGCRCVADHLFN
TRLPHERASVNRGCSNPSCRGRDRRSLSPPDRVLYRPTSRCPSFLHGNTM
RWRRSSGH*
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mRNA from alignment at H-paniculata_contig13616:3649..4125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13616.2234.1 ID=mRNA_H-paniculata_contig13616.2234.1|Name=mRNA_H-paniculata_contig13616.2234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at H-paniculata_contig13616:3649..4125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGATCCACCGAAAAAACTAATCTTGTCGCCTCTCGGGCCGTGGGACTG
GCGTTCCGTGTATAACAGTTACCTCCCCCACTTCCTGCGTTCAATGCGTC
GCCGCTGGCGGTTGCGCCTCCCCCATTACCACGTTGTTGTTGGTCTCTCC
GCCGTAGGCCATCGGCGTGGGAGGCCCACCTGTTCGGTGGGTCGCAGATG
CCGCTCACCACCCTTCCGCCGCTGCCCCTGCCGGCCCCATCACCTGCCCC
TCGATACGTTCAGTCGTGGCTGTAGGTGTGTCGCCGACCACCTCTTCAAC
ACCCGCCTGCCTCATGAAAGGGCGTCAGTCAACCGCGGCTGTAGCAACCC
GAGCTGCCGCGGCCGTGACCGACGCAGCCTTAGTCCCCCCGATAGAGTCC
TGTACCGTCCGACAAGTCGTTGCCCCTCCTTCCTCCACGGCAATACCATG
CGGTGGCGTCGCTCGTCTGGCCACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13616:3649..4125+

>mRNA_H-paniculata_contig13616.2234.1 ID=mRNA_H-paniculata_contig13616.2234.1|Name=mRNA_H-paniculata_contig13616.2234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig13616:3649..4125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGATCCACCGAAAAAACTAATCTTGTCGCCTCTCGGGCCGTGGGACTG
GCGTTCCGTGTATAACAGTTACCTCCCCCACTTCCTGCGTTCAATGCGTC
GCCGCTGGCGGTTGCGCCTCCCCCATTACCACGTTGTTGTTGGTCTCTCC
GCCGTAGGCCATCGGCGTGGGAGGCCCACCTGTTCGGTGGGTCGCAGATG
CCGCTCACCACCCTTCCGCCGCTGCCCCTGCCGGCCCCATCACCTGCCCC
TCGATACGTTCAGTCGTGGCTGTAGGTGTGTCGCCGACCACCTCTTCAAC
ACCCGCCTGCCTCATGAAAGGGCGTCAGTCAACCGCGGCTGTAGCAACCC
GAGCTGCCGCGGCCGTGACCGACGCAGCCTTAGTCCCCCCGATAGAGTCC
TGTACCGTCCGACAAGTCGTTGCCCCTCCTTCCTCCACGGCAATACCATG
CGGTGGCGTCGCTCGTCTGGCCACTAGCACGATCCACCGAAAAAACTAAT
CTTGTCGCCTCTCGGGCCGTGGGACTGGCGTTCCGTGTATAACAGTTACC
TCCCCCACTTCCTGCGTTCAATGCGTCGCCGCTGGCGGTTGCGCCTCCCC
CATTACCACGTTGTTGTTGGTCTCTCCGCCGTAGGCCATCGGCGTGGGAG
GCCCACCTGTTCGGTGGGTCGCAGATGCCGCTCACCACCCTTCCGCCGCT
GCCCCTGCCGGCCCCATCACCTGCCCCTCGATACGTTCAGTCGTGGCTGT
AGGTGTGTCGCCGACCACCTCTTCAACACCCGCCTGCCTCATGAAAGGGC
GTCAGTCAACCGCGGCTGTAGCAACCCGAGCTGCCGCGGCCGTGACCGAC
GCAGCCTTAGTCCCCCCGATAGAGTCCTGTACCGTCCGACAAGTCGTTGC
CCCTCCTTCCTCCACGGCAATACCATGCGGTGGCGTCGCTCGTCTGGCCA
CTAG
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