mRNA_H-paniculata_contig13614.2231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13614.2231.1
Unique NamemRNA_H-paniculata_contig13614.2231.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13614.2231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13614contigH-paniculata_contig13614:2573..2998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size427
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.9580376-CDS-H-paniculata_contig13614:2572..28841622929077.9580376-CDS-H-paniculata_contig13614:2572..2884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13614 2573..2884 +
1691480723.6177657-CDS-H-paniculata_contig13614:2572..28841691480723.6177657-CDS-H-paniculata_contig13614:2572..2884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13614 2573..2884 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.9733326-UTR-H-paniculata_contig13614:2884..29981622929077.9733326-UTR-H-paniculata_contig13614:2884..2998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13614 2885..2998 +
1691480723.6279178-UTR-H-paniculata_contig13614:2884..29981691480723.6279178-UTR-H-paniculata_contig13614:2884..2998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13614 2885..2998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13614.2231.1prot_H-paniculata_contig13614.2231.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13614 2573..2884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13614.2231.1

>prot_H-paniculata_contig13614.2231.1 ID=prot_H-paniculata_contig13614.2231.1|Name=mRNA_H-paniculata_contig13614.2231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
HQQQRSSTSCSSASVPSKELQLYHYRCTLDIVRDDGGDGGGWRGAGGARG
RGEWGVRRYRGQRKGGRLARWLILVVGGVSNENLEGMKEALQSLRLPWKK
KVR*
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mRNA from alignment at H-paniculata_contig13614:2573..2998+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13614.2231.1 ID=mRNA_H-paniculata_contig13614.2231.1|Name=mRNA_H-paniculata_contig13614.2231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig13614:2573..2998+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCAACAGCAGCGATCGTCAACATCGTGCAGCAGCGCTAGCGTGCCTAG
TAAAGAATTACAGCTGTACCACTATCGATGCACCCTCGACATTGTGCGCG
ATGATGGCGGTGACGGCGGCGGCTGGCGTGGGGCAGGTGGAGCACGAGGC
CGAGGGGAGTGGGGAGTGCGACGATATCGGGGGCAGAGGAAGGGAGGGAG
ATTGGCGCGGTGGCTGATACTCGTTGTTGGCGGGGTGTCTAATGAGAACT
TGGAGGGGATGAAAGAGGCCTTGCAGAGCCTGAGGTTGCCTTGGAAAAAG
AAGGTGCGCTGACTAGTTATCGGGGTATGTACAGACAACGGACTGAAAGT
TGAAAGCTCCACAGATTTACGGCTTGAAAACTATTGTCAAATACTACAGC
AGACAAGTATTATTGTCTGTGATGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig13614:2573..2998+

>mRNA_H-paniculata_contig13614.2231.1 ID=mRNA_H-paniculata_contig13614.2231.1|Name=mRNA_H-paniculata_contig13614.2231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig13614:2573..2998+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCAACAGCAGCGATCGTCAACATCGTGCAGCAGCGCTAGCGTGCCTAG
TAAAGAATTACAGCTGTACCACTATCGATGCACCCTCGACATTGTGCGCG
ATGATGGCGGTGACGGCGGCGGCTGGCGTGGGGCAGGTGGAGCACGAGGC
CGAGGGGAGTGGGGAGTGCGACGATATCGGGGGCAGAGGAAGGGAGGGAG
ATTGGCGCGGTGGCTGATACTCGTTGTTGGCGGGGTGTCTAATGAGAACT
TGGAGGGGATGAAAGAGGCCTTGCAGAGCCTGAGGTTGCCTTGGAAAAAG
AAGGTGCGCTGACATCAACAGCAGCGATCGTCAACATCGTGCAGCAGCGC
TAGCGTGCCTAGTAAAGAATTACAGCTGTACCACTATCGATGCACCCTCG
ACATTGTGCGCGATGATGGCGGTGACGGCGGCGGCTGGCGTGGGGCAGGT
GGAGCACGAGGCCGAGGGGAGTGGGGAGTGCGACGATATCGGGGGCAGAG
GAAGGGAGGGAGATTGGCGCGGTGGCTGATACTCGTTGTTGGCGGGGTGT
CTAATGAGAACTTGGAGGGGATGAAAGAGGCCTTGCAGAGCCTGAGGTTG
CCTTGGAAAAAGAAGGTGCGCTGA
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