mRNA_H-paniculata_contig1361.2230.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1361.2230.1
Unique NamemRNA_H-paniculata_contig1361.2230.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1361.2230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1361contigH-paniculata_contig1361:17026..24874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size383
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1361.2230.1prot_H-paniculata_contig1361.2230.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1361 17026..24780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.617509-CDS-H-paniculata_contig1361:17025..171831622929077.617509-CDS-H-paniculata_contig1361:17025..17183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1361 17026..17183 -
1691480723.4884572-CDS-H-paniculata_contig1361:17025..171831691480723.4884572-CDS-H-paniculata_contig1361:17025..17183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1361 17026..17183 -
1622929077.6383119-CDS-H-paniculata_contig1361:24650..247801622929077.6383119-CDS-H-paniculata_contig1361:24650..24780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1361 24651..24780 -
1691480723.4983356-CDS-H-paniculata_contig1361:24650..247801691480723.4983356-CDS-H-paniculata_contig1361:24650..24780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1361 24651..24780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.656175-UTR-H-paniculata_contig1361:24780..248741622929077.656175-UTR-H-paniculata_contig1361:24780..24874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1361 24781..24874 -
1691480723.5174115-UTR-H-paniculata_contig1361:24780..248741691480723.5174115-UTR-H-paniculata_contig1361:24780..24874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1361 24781..24874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1361.2230.1

>prot_H-paniculata_contig1361.2230.1 ID=prot_H-paniculata_contig1361.2230.1|Name=mRNA_H-paniculata_contig1361.2230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MLAAGRSLPAATAARAAAVSRRPGSPPTAVILRALAGTGGPRKGASPAPP
LRGPGTARAAVPPATAGTGAAEAPPVAAGGGGGGAGGAAGGAGGGG
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mRNA from alignment at H-paniculata_contig1361:17026..24874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1361.2230.1 ID=mRNA_H-paniculata_contig1361.2230.1|Name=mRNA_H-paniculata_contig1361.2230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7849bp|location=Sequence derived from alignment at H-paniculata_contig1361:17026..24874- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTGAGTTTTCACGGTTCGGATCTAGTAGCCTGTCTGCAGTAGACATC
GATATCGCTCGTGCTACTGCATTTTTCTGAATAACCTAATCATCATGTTA
GCCGCGGGACGTTCTCTGCCCGCGGCAACGGCCGCTCGCGCGGCTGCTGT
GTCGAGAAGGCCGGGTTCCCCGCCCACCGCAGTGATCCTACGAGCGCTAG
CTGGTACTGGGGGACCTCGCAAAGGTGCGAAGCAGACATAGAAGGGGTGG
GGCATACATGGGGCAATCTGGCGGTGCACGCTTAAAATTGTGGCGCCTGG
GCCTTTGGTCCCGTACAGCAGGCATGTAGAGCATTTGAATGCAATCCGAA
ACGAAAATGACGATATTGAACAGAGACACTTCGGGTGCAAAACAGACCGC
GACCGACACTACAACGTGTTGTGTACAGAGGGAGACTGGGGTCTGTTGGC
CTCAAAGGGAGCTTAAGGGCGAGCTTGTATGGCGGAGTAAGCATCGGTGC
CGTTGCAGGGTCGCGGGGACTGAATTAAAAGAGGGCCTTGCAAAACACAT
TGATGCAAGGAGTTCCGCGTAGTTGTGTGTACGTTAGTGGAAGGACCCGC
CTACTGAGTAGATTGGACTGACTGTTTTTGATACTGGGAATGCTGGTCTA
CTCTGTTATGTGTGAGGGAGAAAAGTACAGGAGTACAGCTTGAATACAGT
AGCAGCATCCGAAGCTCGGTCTTGCGGCACCGCAGAATTCCATGCGAAAG
TACCCAACTCCTGGACAAATCTGAAGCTGGTCTGAAGGTGTCTTTTGCAA
CGGCTTTGCTGCCAACTTAGCTGTGTGGCGAAAAATACGTTACTACATAT
GTCGACTCTCTCAGCCCTGTGCTAGAACAGACAGTGCTATCATCTGCCCC
GTTGCTAAATCCAGGCAGCATCATGTTCAGCGGGTATCCACCCCCTAGGT
ACCTTGTGCCTTTGCCTGTGTCTTTGCCTTTGCATTTGCCTTTCCCTCTA
CTAGTCGCCTGCTTAGTTTATTTGCGTTTGAGATAGTGGCTGCGATGCAT
TGGGCTCCCTACTGCAGGCAGCAATCTCGCACGTGGGTGCAATATGAGGT
CGAAGTCTCGTCAATATGCACCTGCGGCTCACTTGTATTTCATGATGAAC
CATAGAAAGCAGGAGGGAGGCCAGAGTGGGAGACTAGAGTGGACGTTGAA
ATAACCTCCACGCTGATCGCCTCGTCGATCTTCTGGGGTGATCTTGGATC
TCCAGCAGATGGGTCTATTTCCCTACGTTGGTGGGTCTGGCATAAGTTAC
ACCCACAAACTTATGTTGTAGTCGCACACTCCTCGATGTGTGGGCACTTC
ACCGTCTCGCTTCCAGGTATTCCTATTTTTTTTATCCAGTACGGTACGAT
ACGGTTCCCGACGTGACAATCCGGTCCACCCAAATACCGCTTGCTAAAAT
GCTTGTGCAACCTCGCCACGCCCCCCACCTCTTCCACGAAGCACAATTCA
TCAACCAAGCAACAGGAGCAAACGCCTGCCTCTGTGCTATCGCCAGAAAT
CGCCTCTTGTAGCACCTTCTCAAGTACCGTCACCCACGCGCGCTGGCTGC
CCGCTCGCTTGGGGCAGCCATGGCCAAAGAGAATTCGCCTGAGCAGTAGT
TCCTGTTGACGTTTGTCTCTCAATTACAAAATCCAAGTCACGCTTCCGTT
GTGGACGGGCTCGATCAGGAGACGACTTGGTGTTGGTCTTGGTTGAGATG
TTGCTGTGGTTTGCGAAGATGTGTGCGGGGGGGTGGGGGGGGGCGTGGGG
CGACCATATTAGGATTAACATTCCCCTTCCCCCCCTCCCCGTTTAGGTCG
ATTTTCGTGGGTTGACATAGTCAGACAGTAGCCCGTTTCAAGGCCTATAT
CCCTGGCTCATTTTTTAATTTGGTTACTGTATTCGATTGGTCCTACAGTA
AAGATTCCAAACGAGTGGCCCGTTAAAGTCAAGAGGGTTAACAAGAGAAA
GGGTTAGGAAAGTGCTACATGTTTCTCCCTTGCCCAAAACAGAGGGATTG
CAAAAAGAGGGCGGCCATGGTGAAGAGGGGGTCCACGGAAAGTCCATTAT
TTTGGAGGTTTATCTAACCTTGACCCTTCACATTTAATCTACTCTCTCTC
CATTTTCAGTATCTGATGGCCCCTTCTGCTGAAACCTAATAATGATAAAC
CAATAGAAACGCAACTTGGAAATATAGCAAGGTGGAATATCAGACGTGTT
GCGCATATCCAGTGACCCCAAATATAAACCTTGACATCAAGAATAATATA
AGAAAGACTCCACAATACGTTAATATCGAAGATTAATCATTGGAAAATAT
ACGATGGTTCTAGTACGCTTGTTTCTCCCCTCTCACGACCTGCGGAGTGG
AATATCGAGATCTCCCCCACGTGAACTCGAATTAAACCGGTTGCTCTCTG
GGTTTGTACATTATTTGGGTTGAGTACACACCGAACAACGCACCCATGCA
CCCACATGCAAAGTGCCCCTTTTGCCAAAAAGATACACAGTACCTGGAGC
TGAACACACGTGTACATAATGAGGTATAGCGCCATGTGTAGCCGTACATG
GGTATCTTGAACGGTCTGATTGATATACCTAAAACCAACTTCAGAACAGC
ATCCCGATACAGCTGTGACCACATGTACAACGGTGTGGCGGTATGTAAAG
CCTTGTTATCGGATCAATCTAGCACAGCACAACGTCTGAAGCTTTTATAG
TCATGCTTCACCCTTTCTTCATTTCGCCGTACAACGAGCAAGCTCTGCCA
TACGAAATGTGTGGAGGGACGGAGTAGCGGAGACTTTCGTAATTGTGAGA
CCGGGCTCCTCAGGTGCCTATGTAGGTGTTCCTCGAGATTTGCGCCGACT
ACCGTAAACCCCTCTGTTGCGGCATCAAAGCGCATTTTGGTTGAAATCCG
AGTATCTAGAGGACGGATATTTTCATTGGTCAGGAGAGCTCGCCAAACGG
CAGATCTTCACATGGTCTTTCCCATGACACATCTTTCGTTATTTGAAGCG
CCGTTGTTGTCGAGATAAGTGCAGTGTTCGCGCCGCGGTGTGGTGACAGA
AGAATTTTTGGCATCTAGCCACGCTTGGGCAGGCATGACCGCAGTGGGTG
CAACGGTTGGTGTTGATCACACGTCGCGAGTCGCTTGTGAAAAGCCTTGG
CCATCAGTGCAACGTCCCCAATGCTCGTTCATGGTGTGTGGGACCTTGAG
GTGGACTTGAAATCACTGGTGTTGAGACCGTGGCTAGTAGTGGTAGTGCT
GGTGTATTCATGTGTGCCCGTGTCCCCGAACGGACATGGCACACGTCGTC
GGGGCAGACAGGGTAACATACAGGGGGAGATATCGATAGTGCCCTACAGC
AGCTGACTTCTTTTAGGAGAAACTGTTGAAAAGAACGTCGAACGTAGGTG
AGAGAGGAATCGGTGGGTGAGACGAGTGTGACTGGCGTGGAGGTCAAGTT
GATTCCATCTCCACCTCCATGTCCATCATCTTTCTCTCATCACTCTTTTC
TTCTTTTCGGTGTTCGAAGCCCCCTTCAACAGTTTATATCTACTCACATG
AGCTGTCGAGCAGAGTGTCGAGAGGTCCTTGTGTTGATGACTCGTGTAGA
GCCGGTTGCTTGGGGTTTGCGAACTCTCTTTGGTCGGGCACAAGTACACA
CACACACGCCCCACATCGCTCATGATTGACGCACGTGTACATTCTAAACG
AAGGGCAAGAAGAGTAATTCCTCTTTGAATATAACTGCGACGACCGGAAT
GGTTGGGACTTGGCAATTACAAGGTAGGCCTCCTTTGATGCCTTGCTATG
CCCCTTCAACGTCCGTGCCAACTCAGGCAAGCGTGGTCGCAGCCGGCGCG
ACGGTTGATATTGATGGCACATTGGATACCGCCTGCGGAAGCACTCGCAA
CCCTCACAACGTCCCCCGTATTCGTTCACGCTGTGTTAGATCTTGAAGAC
TTACTTTGTTGCTGTTGTAGGGACCTTGGCTATATCTGGACATGTTATAT
TCTGGCTGTGCGGGGTTGTACTTTGAAAGTGGGATCATGTTTTTTTTGTC
TCGTCTTGAGCATGACACTTTCGTGAGAGTGGTCGCCCAAAGATCTTGAC
CGCGTCATCTTTGTGTTCTTTTTTGTCCCGTGTTCTCATCAAGCACGTGG
AGCCATTTGCTTCCTTTCATGATCAAGTGTTTCCAAGCCTCGATTGGAGG
GTAGTACAGAATCATTTTGGCAGTAAGATGGGGTGTCAAACACCTAGCGC
AGAAGGAGAGGGGGTGATGGTGGTATTCGTGTATCGGAATTGGCAAGGCA
AACCTCGCCGAGGCTGAATGGAGAACGGGGGGGAAGTTATCAACAGTCCT
CAATTTATATCAGGAGAAACTATAGAAAGAGGGTCGGGCGTACGTGAGAG
AGGAAGGAGGCCTGCATGAGAGCAATTGGCGTCGAGGTTGAGTTGATTTT
ACCGCTACGCATATCACCGCTTCTGGGTGTATTATTTCGTCTCTGTAGCT
TCCATTACTACGTTCTATGGCTTATCTCTTGTCCCATGAGTTCTCGAGCG
GAGTGTCTAGATCTCCCAGTGTTGACTCAAGTAGAGACGCTTGCCCGGGG
TTTGAATACTCTCTTATTCGGGCAAAATGCGGATTCCTTGCCATACCCCT
TAAACATCCGCGCCAACGAAGTGGCCACGCGTGGGCAAGGGTGGTCGCAG
CCGGCGCGACGGCTGATGTTAATGGCACATGGGGATCCCATTCCGGAAGC
CCTCGCTACCATTACAATGTCCCCGGTACTCGTTCATGGTATGTTGGACC
TTGGGGCAGACTTGTGTGGTCGCTGGTGTTGAAACCTTGTCTACATCCAG
AAGCCCCTATTACTGCTTGGGCAGGGTTATACTTCGATACAGGGGTCACT
CGTTTTGAGCATGACATTCTCCTGAGAATGGCTGCCTTGACCGCGTCAAC
TCTGTTCTTTTTCTTTTTTTTTCTTACTGATGCGTACGCGGAGCCGTTTG
CTTGTATTCACCAACACTTGGAGGGTTGTATTCTTGTAGGGAAAAGGGGG
TACCCCCTATCGCAGGACGAGGAAGAGTGGTGGCATTGGTTGTGGTGTGT
GTGTGTTTTGTGTGGCCCAACCCGCATTATAACCCTCGCCGGGGCCGAGT
GGGTATCAGGGAGATCTCAACAAGGTGCTAGCTCTGGAGCCCATTTTTTT
CAGGAGAAACAGCAGAAAAGAGCCTAGGACGTTACGTGAAAGAGGAGGGA
GGCCAGGAGGACTGCAATTGGCGTGGAGTTGAGAGTTGATTCCACGTCTA
CGCCCATAGCCTCCATTCCGGGTATCGTGTCGTCTCTTCAAAGCATTCCT
TGGCCTCGTGCTACGATTTATCTCTGCTGTCATGAGCTGTCGAGCGAAGT
GTCGTGGTCTATTCCATGCTGTCGCGCAAGCCTCGCTGTTTGCTCGGAGT
TTGTGTAATCTTCGGGTTCAAAACCACTCGCATATTCCACCGCCCCCGTT
CCACCCGTTTTTAAGTGAAGTACATCGTGACATTTTCGACGCACGGCAAG
TATAGTCTCTCTTACATTGAAGAAACAATGAAGCCTGACGATGCCATGGA
CCAGTTCGCGGTCGGTCTGTCTCATGGCAGGACTTGCCGGTCGTGTGAAG
GGGTGTTGAGAAAAATTGTAACAAAAACTGTGTCGACAAGCCAGCATTCC
ACGTCCATGTGATATGCGCCTGTCTGTGCTCATGATTTGAAAGCGGCGAC
CGTTTGGATGAGAGGAGGAACCTGGCTTGTATATATTTCCATGCCCGCTG
TTAAGGTGCGTGTGTGCGTAAGAAAAGACTAGCGTCTGTTTGACGAGGAA
CCTGCGACGTCCCTGTCGTCACAAATCACGACAGACTTGTGGAAAAATCG
CGGATAATGATTGTGGTCGCGAGCCGTGTCTACAAATAATACAGACAGAC
CGACAACCAAAATCAAGACTTCGCTTTAGAAACCAAGACTGCTAGACCGG
GAAGAGAGCCCACACGCTCCTGACCAAGTAACTACGCAGACTGGTGCATG
AGGGAGGCGCTTCGCATGCGACCGAGATGACAATAACTGTGGTGGTCAAA
TTGGTTAGCCTAGTCTTCGCTGATATAACAAGATAGCTAAATCTACTTGA
ATATAGTAGCATAGAAGTTTGAACGTTACCAAGGTGTCGATGTTTCGTCG
TACTACGGAGGGTCCTCACAAGTAGAACCCGTGTATTTCTCGTCCGGTAT
TTGAGGTTCACCCGGCAACCGATGGTGCGACTTGACCGTAGGGACCAGGT
GGTGACACATGAAGAGGTGCCCTTGAGGGCTTCAATCTTTAGGAGCCGGA
CTTGGTAACGGCCAAGAGGTGGACTTGTTAACGAGCCAGTTGTAATAATA
ACGAACACATCGATAGAATGCCTTAACCAGCTCTGGAGAGCTGGTGAGTG
CACCTCAGTTGCAAAAGTGATTAATTTTCCCCGATTCGGGGGCGTTCGTA
TTAGATTTAATGCAGGAGAAGGGGCAAACACCGTTTTTTTTTTTTTTGGT
AACATCTCCATATTAAACAAGCGCTCTAGAGCTGATTAGTGGGTCGGAAA
ATTATAAGGGGTTAATTGGCTTCGATTTACGCCAGATTGGGATTAATGTC
GTTTTTGTATTGCCTGTTGATAGTTTGTACGGTTAGCAGATTTTGGTTGT
ACCGGGTATTTTCCCGGAATTTTTCGCATCAGGGGCATTTAGTATGTTGG
GGGGAAAAGTATTGTAATTTGGTCACTTGTTTTATAATCCAAACTAACGA
TGGCATGCATGCATCGGGTGGGTGAAGGGATCACGACGAAATGACACCAA
ATTCGAAAGAAAGACGTTCGTCTCGAGTTATATCCATATATCTTATATCT
CAACATGCAGCTGCCAGCACTCAAAAACCGTGTTGCCCGCCTTCAAGTGT
TCATATCTCGCTAACTACTGCGAGTCGGGCCCACCGCAGTGCGACGTCTC
TGTTGTTCTCTTTGTACTGAGCGATGGTTATAGCTGGGTCGGATTTTTTG
TAGGCTACACACTCTCGGCATTTCAGATACAGCAAAATATAATGGACCCC
AACAGCAGTTGAAGTAGTCAACGAAGGTCCTTGAAAGTGAGAGATCATAC
CTTAGGTATGAATTTGGGGATCATGACGTCAACGCTCGTTGAAACATGCG
CGAGATGCGGTTTATTCTCTACTGGGTTCAGGTTGCCCCTCATTGCTAAA
ATTCGCTGATAAGGGTAAACAACTGAAGTTCGAAGTCGACTGCATAACCT
CAACATGGGTACAATGGAGGAGTCGGGCGTTTTCGGAAACTGCCCCCCTG
ATCCTTCTTCCCCTATTTATAAAGCAGAGGTCTACGTTCGTTATACATGC
AACCGATACAGTGAAAATCTATGCTAGGGTACAGCAACCCATGTTACTCT
TCTCATTTCAAGCTACGCTCTCCCCCCTCCCTCATCCACAAAGCAGAGGT
GTACGTTCGTCGTAATTGCAATTGATGCAGTAAAAGTCTATGCTAGGGTA
CATTAACTCATGTTATTTCCTTGTTCCAAGCTGCCCTCCCGCTCCGCGCC
CCACCGCCCCACCGCCCAACCTCCCTTATCCCACAAACCAGGAGCATCGC
CTGCCCCTCCGCTCAGAGGCCCAGGTACCGCACGGGCAGCCGTTCCTCCT
GCTACTGCAGGGACTGGGGCAGCCGAGGCGCCACCGGTGGCCGCTGGTGG
TGGTGGTGGTGGCGCGGGGGGCGCGGCCGGAGGCGCCGGGGGAGGCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1361:17026..24874-

>mRNA_H-paniculata_contig1361.2230.1 ID=mRNA_H-paniculata_contig1361.2230.1|Name=mRNA_H-paniculata_contig1361.2230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig1361:17026..24874- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGCCGCGGGACGTTCTCTGCCCGCGGCAACGGCCGCTCGCGCGGC
TGCTGTGTCGAGAAGGCCGGGTTCCCCGCCCACCGCAGTGATCCTACGAG
CGCTAGCTGGTACTGGGGGACCTCGCAAAGATGTTAGCCGCGGGACGTTC
TCTGCCCGCGGCAACGGCCGCTCGCGCGGCTGCTGTGTCGAGAAGGCCGG
GTTCCCCGCCCACCGCAGTGATCCTACGAGCGCTAGCTGGTACTGGGGGA
CCTCGCAAAGGAGCATCGCCTGCCCCTCCGCTCAGAGGCCCAGGTACCGC
ACGGGCAGCCGTTCCTCCTGCTACTGCAGGGACTGGGGCAGCCGAGGCGC
CACCGGTGGCCGCTGGTGGTGGTGGTGGTGGCGCGGGGGGCGCGGCCGGA
GGCGCCGGGGGAGGCGGAGAGCATCGCCTGCCCCTCCGCTCAGAGGCCCA
GGTACCGCACGGGCAGCCGTTCCTCCTGCTACTGCAGGGACTGGGGCAGC
CGAGGCGCCACCGGTGGCCGCTGGTGGTGGTGGTGGTGGCGCGGGGGGCG
CGGCCGGAGGCGCCGGGGGAGGCGGA
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