mRNA_H-paniculata_contig13605.2227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE) HSP 1 Score: 133 bits (334), Expect = 9.560e-33 Identity = 72/179 (40.22%), Postives = 107/179 (59.78%), Query Frame = 1 Query: 4 KREAILEEVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDDLAM--RELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKEKG 534 KR AI+ + A P L ++A+CY E A IY M++GERR I +G+ QG+G+GP LFC + I+ R +++ LGV L AYVDD+++ + +T E ++ I LV EL +G+ + K+ A+ P H T E L G+ +AE G VV G PIG+DA+V+ A+ V+ E G Sbjct: 159 KRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGG 336
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 130 bits (328), Expect = 4.660e-32 Identity = 72/180 (40.00%), Postives = 105/180 (58.33%), Query Frame = 1 Query: 4 KREAILEEVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDD---LAMRELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKEKG 534 KR AI+ + A P L ++A+CY E A IY M++GERR I +G+ QG+G+GP LFC + I+ R +++ LGV L AY+DD L + +T E ++ I LV EL +G+ + K+ A+ P H T E L G+ +AE G VV G PIG+DA+V+ A+ V+ E G Sbjct: 151 KRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGG 329
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.180e-31 Identity = 71/179 (39.66%), Postives = 107/179 (59.78%), Query Frame = 1 Query: 4 KREAILEEVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDDLAM--RELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKEKG 534 KR AI+ + A P L ++A+CY E A IY M++GERR I +G+ QG+G+GP LFC + I+ R +++ LGV L AY+DD+++ + +T E ++ I LV EL +G+ + K+ A+ P H T E L G+ +AE G VV G PIG+DA+V+ A+ V+ E G Sbjct: 520 KRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGG 697
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE) HSP 1 Score: 129 bits (323), Expect = 2.480e-31 Identity = 70/179 (39.11%), Postives = 107/179 (59.78%), Query Frame = 1 Query: 4 KREAILEEVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDDLAM--RELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKEKG 534 KR AI+ + A P L ++A+CY E A IY M++GERR I +G+ QG+G+GP LFC + I+ R +++ LGV L AY+DD+++ + +T E ++ I +V EL +G+ + K+ A+ P H T E L G+ +AE G VV G PIG+DA+V+ A+ V+ E G Sbjct: 67 KRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGG 244
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 127 bits (320), Expect = 6.910e-31 Identity = 69/179 (38.55%), Postives = 107/179 (59.78%), Query Frame = 1 Query: 4 KREAILEEVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDDLAM--RELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKEKG 534 KR AI+ + + P L ++A+CY E A IY M++GERR I +G+ QG+G+GP LFC + I+ R +++ LGV L AY+DD+++ +++T E ++ LV EL +G+ + K+ A+ P H T E L G+ +AE G VV G PIG+DA+V+ A+ V+ E G Sbjct: 519 KRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGG 696
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE) HSP 1 Score: 127 bits (319), Expect = 9.520e-31 Identity = 70/179 (39.11%), Postives = 106/179 (59.22%), Query Frame = 1 Query: 4 KREAILEEVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDDLAM--RELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKEKG 534 KR AI+ + A P L ++A+CY E A IY M++GERR I +G+ QG+G+GP LFC + I+ R +++ LGV L AY+DD+++ + +T E ++ I LV EL +G+ + K+ A+ P H T E L G+ +AE G VV G PI +DA+V+ A+ V+ E G Sbjct: 546 KRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIETDAYVEDIAMKVITEGG 723
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 125 bits (315), Expect = 3.390e-30 Identity = 69/179 (38.55%), Postives = 105/179 (58.66%), Query Frame = 1 Query: 4 KREAILEEVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDDLAM--RELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKEKG 534 KR AI+ + A P L ++A+CY E A IY M++GERR I +G+ QG+G+GP LFC + I+ R +++ LGV L AY+DD+++ + +T E ++ I LV EL +G+ + K+ A+ P E L G+ +AE G VV G PIG+DA+V+ A+ V+ E G Sbjct: 541 KRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAIKVIAEGG 718
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE) HSP 1 Score: 118 bits (296), Expect = 5.050e-28 Identity = 66/180 (36.67%), Postives = 101/180 (56.11%), Query Frame = 1 Query: 4 KREAILEEVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDDLAMR--ELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKEKGE 537 KR I+ + A P + ++A+CY E A IY M++GERR I +G+ QG+G+GP LFC + I+ R ++ LGV L AY+DD+++ +T E ++ I LV EL +G+ + K+ A+ P H T E L G+ +AE G VV G PIG+DA+V+ + + E Sbjct: 144 KRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDKLQAAPRRRKE 322
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE) HSP 1 Score: 116 bits (291), Expect = 4.810e-27 Identity = 64/170 (37.65%), Postives = 99/170 (58.24%), Query Frame = 1 Query: 25 EVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDDLAM--RELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKE 528 + A P L ++A+CY E A IY M++GERR I +G+ QG+G+GP LFC + I+ R +++ LGV L AY+DD+++ + +T E ++ I LV EL +G+ + K+ A+ P H T L G+ +AE G VV G PIG+D +V+ A+ V+ E Sbjct: 3 QAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAGRRLLGDAGLPIAEEGITVV-GVPIGTDVYVEDIAMKVMTE 171
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Match: A0A6H5J7C4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C4_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.560e-22 Identity = 56/145 (38.62%), Postives = 87/145 (60.00%), Query Frame = 1 Query: 106 METGERRRITSNTGIHQGEGLGPALFCMPVGSILRMCREQFEALGVELLAYVDDLAM--RELTEEKLRAIHFLVQELARIGVQIKNAKTKAVSPMNHTSTEREIAALAAMGISVAERGGAVVTGAPIGSDAFVQQYAVTVVKEKG 534 M++GERR I +G+ QG+G+GP LFC + I+ R +++ LGV L +Y+DD+++ + +T E ++ I LV EL +G+ + K+ A+ P H T E L G+ +AE G VV G PIG DA+V+ A+ V+ E G Sbjct: 1 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKSYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGKDAYVEDIAMKVITEGG 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13605.2227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13605.2227.1 >prot_H-paniculata_contig13605.2227.1 ID=prot_H-paniculata_contig13605.2227.1|Name=mRNA_H-paniculata_contig13605.2227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp VKREAILEEVAIRTPGLTPFVAKCYGEKSADIIYQMETGERRRITSNTGIback to top mRNA from alignment at H-paniculata_contig13605:199..735- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13605.2227.1 ID=mRNA_H-paniculata_contig13605.2227.1|Name=mRNA_H-paniculata_contig13605.2227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at H-paniculata_contig13605:199..735- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13605:199..735- >mRNA_H-paniculata_contig13605.2227.1 ID=mRNA_H-paniculata_contig13605.2227.1|Name=mRNA_H-paniculata_contig13605.2227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig13605:199..735- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |