mRNA_H-paniculata_contig136.2224.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig136.2224.1
Unique NamemRNA_H-paniculata_contig136.2224.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig136.2224.1 vs. uniprot
Match: D8LMJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ2_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 4.900e-30
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 EKQGTLTEIEALKPARRINHHKQVWSATWKLVRRGCCQGLAGLQCLVRTLLWRLRVGGQTTSLADMSLVADYLRFLLIPSQ 243
            E  G L EIEALK AR+INHHKQVWSATWKLV RGCC G+  L+CLVRTLL+RLR+ G + SL D+S+ ADY RFLL+PSQ
Sbjct:   94 ESSGKLAEIEALKLARKINHHKQVWSATWKLVARGCCHGVMELRCLVRTLLYRLRINGPSVSLDDLSVFADYARFLLVPSQ 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig136.2224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMJ2_ECTSI4.900e-3070.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig136contigH-paniculata_contig136:48663..49935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size247
Cds size246
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig136.2224.1prot_H-paniculata_contig136.2224.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig136 48664..49935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.1571846-CDS-H-paniculata_contig136:48663..487451622929077.1571846-CDS-H-paniculata_contig136:48663..48745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig136 48664..48745 -
1691480723.2396674-CDS-H-paniculata_contig136:48663..487451691480723.2396674-CDS-H-paniculata_contig136:48663..48745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig136 48664..48745 -
1622929077.1737924-CDS-H-paniculata_contig136:49128..492231622929077.1737924-CDS-H-paniculata_contig136:49128..49223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig136 49129..49223 -
1691480723.2524989-CDS-H-paniculata_contig136:49128..492231691480723.2524989-CDS-H-paniculata_contig136:49128..49223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig136 49129..49223 -
1622929077.1903224-CDS-H-paniculata_contig136:49866..499351622929077.1903224-CDS-H-paniculata_contig136:49866..49935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig136 49867..49935 -
1691480723.2678576-CDS-H-paniculata_contig136:49866..499351691480723.2678576-CDS-H-paniculata_contig136:49866..49935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig136 49867..49935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig136.2224.1

>prot_H-paniculata_contig136.2224.1 ID=prot_H-paniculata_contig136.2224.1|Name=mRNA_H-paniculata_contig136.2224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
EKQGTLTEIEALKPARRINHHKQVWSATWKLVRRGCCQGLAGLQCLVRTL
LWRLRVGGQTTSLADMSLVADYLRFLLIPSQA
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mRNA from alignment at H-paniculata_contig136:48663..49935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig136.2224.1 ID=mRNA_H-paniculata_contig136.2224.1|Name=mRNA_H-paniculata_contig136.2224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1273bp|location=Sequence derived from alignment at H-paniculata_contig136:48663..49935- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAACAGGGAACGTTGACGGAAATAGAAGCCCTGAAGCCCGCGCGCAG
GATCAATCACCACAAGCAGGTGAGGAAGGAATAAAAAAAACTGTCGATGC
AAGTGGGCACGTGCGCTCGCCTGGAACAGGATTGCACTCTTCACTCCGTA
CTAGTTCAAGGCTTACCACCTTGGCAATAGTACGTTGATGTTTTTGACAT
TGAGGTCTATTCCATGTACTGCGGCGATTCTTTCACTTTCAGCATTTCAT
TCTGTCAATTCCGTTTATGCGAAGATTGTCGACAAGCGGTAAGGCTCTGG
TAAGCCGAAGCGCACCGAGTCGTGTCTTTGAGGCAATGTCGTCCCCAAAA
CACCATGTAGCATGAACCTGAGATCTCCCCACCAGTCACTCCGGCTTAAA
TATATCAGTTCGGCAAAGAGAATTTTCGAAAACAAGAAACAGGAATCATT
GCCCAGGATTGTCGAATAGATATCAACGGCATCGCCCTCTAGTATAACAG
TGCTGCTGCAGTGTTCGATAGAGAGTGCAACCATGGTACCCCGACTAGAG
ACAACCTATCCCGGGGATGTGCGAGATCCAGTGTTCACGCCTTCTTCGGC
CTGTGAACGATTTAGTGTGGAGGTCCATGATAACAGTGTCTCCAGCTTTG
CTAGGCCGAAAATTGCAAACAACGCGCCCCGAAATACTTTTATATCATGT
CACGAATACGAGGTGTGGTCGGCGACGTGGAAACTAGTGCGAAGGGGATG
TTGCCAGGGTCTTGCAGGGTTGCAGTGCCTGGTGAGGACGTTGCTGTGGA
GGCTACGGTGGGTACTTCTGTGATGGCACCGTAGGACCATGCTACAATAC
TACGAGAAACGCGCTCAGGCTGAGTTTGAGAGCAGAAGCTTGGTATATTT
CCGGCTTACGGTGACTAGATTTTCCGTTCAGATTTCTACCACGAAAGGAT
TGATTCGGCTGCTGCCAACACGTCCAGTCGCTGCACATGCGTAGCATACG
ACGATTGACCAGAAGCAATTAGCGTAACCACTTTTGGGGTCCTTGGAATA
AACCATAGAGGGTGCGTCTATTTCTTTCTATGAGCTCGCTGATTCCGAAC
ATTGGAAACTATTATCCACCATAGACATCGTAAATACTCAATGGTATCCT
CGAACACGACAATCTATGACATGTATTGTTATCCTCCCAGGGTCGGCGGG
CAGACCACGTCTTTGGCGGACATGAGTTTGGTCGCAGACTACCTGCGTTT
CCTCTTAATACCGTCACAGGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig136:48663..49935-

>mRNA_H-paniculata_contig136.2224.1 ID=mRNA_H-paniculata_contig136.2224.1|Name=mRNA_H-paniculata_contig136.2224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig136:48663..49935- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAACAGGGAACGTTGACGGAAATAGAAGCCCTGAAGCCCGCGCGCAG
GATCAATCACCACAAGCAGGAAAAACAGGGAACGTTGACGGAAATAGAAG
CCCTGAAGCCCGCGCGCAGGATCAATCACCACAAGCAGGTGTGGTCGGCG
ACGTGGAAACTAGTGCGAAGGGGATGTTGCCAGGGTCTTGCAGGGTTGCA
GTGCCTGGTGAGGACGTTGCTGTGGAGGCTACGGTGTGGTCGGCGACGTG
GAAACTAGTGCGAAGGGGATGTTGCCAGGGTCTTGCAGGGTTGCAGTGCC
TGGTGAGGACGTTGCTGTGGAGGCTACGGGTCGGCGGGCAGACCACGTCT
TTGGCGGACATGAGTTTGGTCGCAGACTACCTGCGTTTCCTCTTAATACC
GTCACAGGCGGGTCGGCGGGCAGACCACGTCTTTGGCGGACATGAGTTTG
GTCGCAGACTACCTGCGTTTCCTCTTAATACCGTCACAGGCG
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