mRNA_H-paniculata_contig1359.2217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1359.2217.1
Unique NamemRNA_H-paniculata_contig1359.2217.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: D8LAX5_ECTSI (Nfu_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX5_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 5.890e-117
Identity = 181/235 (77.02%), Postives = 202/235 (85.96%), Query Frame = 3 
Query:  852 KNVRHRATPWIAQQSRTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGVPWEP 1556
            +N     +PW++QQSR+FFIQTE TPNPNSLKFLPGRPVLPA+HGTG+Y+T  D+E  QSPLA  L  L+ V  VFLG+DFITISK ++G W L+KP+VFG IMDFFAEGK V+L EPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFY+GFDP TGTV VQLAGSC GCPSSTVTLKNGVE MLMHYIPEVT+V +VEDEEL  VNQKE   LEDRLK+AGVP+EP
Sbjct:   48 RNHPRSRSPWLSQQSRSFFIQTEPTPNPNSLKFLPGRPVLPAEHGTGVYFTPDDREKSQSPLAVALLSLEGVAGVFLGTDFITISKHDEGGWTLMKPVVFGEIMDFFAEGKPVMLAEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYRGFDPNTGTVNVQLAGSCVGCPSSTVTLKNGVEKMLMHYIPEVTAVNAVEDEELKQVNQKEVNELEDRLKAAGVPFEP 282
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: A0A1V9Y8Q5_9STRA (Iron-sulfur cluster scaffold protein Nfu n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8Q5_9STRA)

HSP 1 Score: 286 bits (732), Expect = 4.260e-85
Identity = 144/222 (64.86%), Postives = 174/222 (78.38%), Query Frame = 3 
Query:  882 IAQQSRTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGVP 1547
             A  SR+ FIQTESTPNP+S+KFLPGRPVL     TG+ +T    E RQS LA  LF++D V  VF G DF++I+K ED  W +L+  +F  IMDF+A GK V+L++P +TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDIFYKGFD  TG V+VQLAGSC GC SS+VTLKNGVENMLMHYIPEVT VE V+D  L D+N+ E K LE+RL++AG+P
Sbjct:   90 FAVPSRSMFIQTESTPNPHSIKFLPGRPVLDERFTTGVDFTPKAPEVRQSELARELFKIDGVNRVFFGKDFVSITKDEDEDWEMLRGQIFATIMDFYATGKPVMLDKPEITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIFYKGFDEETGIVKVQLAGSCVGCASSSVTLKNGVENMLMHYIPEVTGVEEVDDG-LKDINENEFKTLEERLRAAGIP 310
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: A0A3R7KYD2_9STRA (Nfu_N domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KYD2_9STRA)

HSP 1 Score: 283 bits (725), Expect = 1.270e-84
Identity = 149/253 (58.89%), Postives = 183/253 (72.33%), Query Frame = 3 
Query:  801 RLLHIVAAGGPTGPSRLKNVRHRATPWIAQQS--RTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGVPWE 1553
            RLLH     G    S L   + RA+P+  +    R+ FIQTE TPNP S+KFLPGR VL     TG+ +T G +E R+SPLA  LF+++ VT VF G +FI+I+K ED  W  L   +F  IMDFFA  + V+ +EP+VTDTTIL DDDEVVAMIKELL++R+RP+VQ+DGGDIFYKGFD  TGTV VQLAGSC+GCPSS+VTLK GVENML HYIPEV ++E   DEEL  VNQKE   LE++L+S G+P E
Sbjct:   24 RLLHSQPLAGRVS-SALYTPKPRASPFAGRSGALRSMFIQTEPTPNPQSVKFLPGRVVLDERFTTGVDFTVGSEEVRRSPLAKKLFQIEGVTRVFFGKEFISITKDEDEDWDALNAEIFATIMDFFASEEEVMSDEPIVTDTTILPDDDEVVAMIKELLEQRIRPSVQDDGGDIFYKGFDEKTGTVSVQLAGSCAGCPSSSVTLKQGVENMLKHYIPEVRTIEEWVDEELNAVNQKEFLTLEEKLRSVGIPSE 275
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: A0A1V9Y986_9STRA (Iron-sulfur cluster scaffold protein Nfu-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y986_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.360e-84
Identity = 141/230 (61.30%), Postives = 176/230 (76.52%), Query Frame = 3 
Query:  858 VRHRATPWIAQQSRTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGVP 1547
            ++ R     A  +R+ FIQTE+TPNP+S+KFLPGR VL     TG+ +T    E RQS LA  LF +  VT VF G DFI+++K ED  W LL+  +F  IMDF+A GK V+ ++P++TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDIFYKGFD  TG V VQLAGSC+GCPSS+VTLKNGVENMLMHYIPEV  ++   DEEL +VN+KE ++LE RL++AG+P
Sbjct:   36 IKPRQAAVFAVPARSMFIQTENTPNPHSIKFLPGRAVLDERFTTGVDFTPKSPEVRQSLLAKELFTIHGVTRVFFGKDFISVTKTEDEDWDLLRGQIFATIMDFYASGKPVMSDKPIITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIFYKGFDEETGIVTVQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVRGIKEFVDEELNEVNEKEFQSLEARLRAAGIP 265
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: A0A8K1CQF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQF8_PYTOL)

HSP 1 Score: 281 bits (718), Expect = 1.240e-83
Identity = 139/216 (64.35%), Postives = 171/216 (79.17%), Query Frame = 3 
Query:  897 RTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGV 1544
            R+ FIQTESTPNP SLKFLPGR VL     TG+ +T G +E R+S LA  LF++D VT VF G DFI+++KQED  W  L+  +F +IMDFFA G+ V+ +EP+VTDTTIL DDDEVVAMIKELL+ R+RP+VQEDGGDIFYKGFD   G V++QLAGSC+GCPSS+VTLKNGVENML HYIPEV  +E V D+EL  +N +E K+ ED+L++AGV
Sbjct:   56 RSMFIQTESTPNPQSLKFLPGRVVLDERFTTGVDFTPGSEEVRRSALAKKLFQIDGVTRVFFGKDFISVTKQEDEDWDALRSEIFASIMDFFATGEEVMSDEPIVTDTTILPDDDEVVAMIKELLESRIRPSVQEDGGDIFYKGFDEEKGIVKLQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEVTDDELKALNDQEFKSFEDKLRAAGV 271
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: A0A2D4C4T2_PYTIN (Iron-sulfur cluster scaffold protein Nfu-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4T2_PYTIN)

HSP 1 Score: 280 bits (715), Expect = 3.690e-83
Identity = 135/220 (61.36%), Postives = 172/220 (78.18%), Query Frame = 3 
Query:  885 AQQSRTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGV 1544
            A   RT FIQTE TPNP+S+KFLPGR VL     TG+ +T G +E R+S LA  LF++D VT VF G DF++++K ED  W  L+  +F  IMDF+A G+ ++ +EP+VTDTTIL DDDEVVAMIKELL+ R+RP+VQEDGGDIFYKGFD  +G V++QLAGSC+GCPSS+VTLKNGVENML HYIPEV  +E V+D+EL  +N+ E K+ ED+L++AGV
Sbjct:   55 AGAQRTMFIQTEPTPNPHSIKFLPGREVLDERFTTGVDFTPGSEEVRRSTLAKKLFQIDGVTRVFFGKDFVSVTKNEDEDWDALRSEIFATIMDFYATGEQIMSDEPIVTDTTILPDDDEVVAMIKELLETRIRPSVQEDGGDIFYKGFDEXSGIVKLQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEVQDDELNAINENEFKSFEDKLRAAGV 274
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: A0A485KKH5_9STRA (Aste57867_8521 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKH5_9STRA)

HSP 1 Score: 277 bits (709), Expect = 2.660e-82
Identity = 141/229 (61.57%), Postives = 175/229 (76.42%), Query Frame = 3 
Query:  861 RHRATPWIAQQSRTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGVP 1547
            R R     A   RT FIQTE+TPNP SLKFLPGRPVL  +  + + +T    E R+S LA  LF +  VT VF G DFI+I+KQED  W  L+  +FG IMDF+A GK ++ +E V+TDTTILD+DDEVVAMIKELL+ R+RPAVQ+DGGDIFY+GFD   G V++QLAGSC+GCPSS++TLKNGVENMLMHYIPEV  +E V DEEL D+N++E K LED+L++AG+P
Sbjct:   48 RARRPSLFATTVRTMFIQTETTPNPLSLKFLPGRPVLD-ERFSSVDFTPKGPELRRSLLAKDLFTIPGVTRVFFGKDFISITKQEDVDWDELRGQIFGTIMDFYASGKPIMTDEEVITDTTILDEDDEVVAMIKELLETRIRPAVQDDGGDIFYRGFDEDRGIVKLQLAGSCAGCPSSSITLKNGVENMLMHYIPEVRGIEEVVDEELKDLNEQEFKTLEDKLRAAGIP 275
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: A0A6G0W9T7_9STRA (Nfu_N domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9T7_9STRA)

HSP 1 Score: 276 bits (707), Expect = 4.810e-82
Identity = 134/216 (62.04%), Postives = 169/216 (78.24%), Query Frame = 3 
Query:  897 RTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGV 1544
            RT FIQTE+TPNP SLKFLPGR VL     TG+ +T    E R+S LA  LF +  V  VF G DFI+I+K +D  W +L+  +FG IMD++A GK ++ +E V+TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDI+Y+GFD  TG V++QLAGSC+GCPSS++TLKNGVENMLMHYIPEV  ++ VEDEEL D+N KE + LE++L+ AG+
Sbjct:   57 RTMFIQTETTPNPQSLKFLPGRLVLDERFTTGVDFTPKGPELRRSLLAKDLFAISGVVRVFFGKDFISITKHDDEDWDVLRGQIFGTIMDYYASGKPIMTDEEVITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIYYRGFDETTGIVKLQLAGSCAGCPSSSITLKNGVENMLMHYIPEVRGIQEVEDEELKDINNKEFQTLEEKLRKAGI 272
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: A0A0P1ARC0_PLAHL (Iron-sulfur cluster scaffold protein nfu-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ARC0_PLAHL)

HSP 1 Score: 275 bits (703), Expect = 1.630e-81
Identity = 138/229 (60.26%), Postives = 176/229 (76.86%), Query Frame = 3 
Query:  873 TPWIAQQS--RTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGVPWE 1553
            +P++A+    R+ FIQTESTPNP S+KFLPGR VL     TG+ +T   +E R+SPLA  LF+++ V+ VF G DFI+I+K +D  W  L   +F  IMDFFA  + V+ +EPV+TDTTIL DDDEVVAMIKELL++R+RP+VQ+DGGDIFYKGF+  TG V VQLAGSC+GCPSS+VTLK+GVENML HYIPEV  +E   DEEL  VN+KE ++LED+L+S G+P E
Sbjct:   44 SPFLARGGAMRSMFIQTESTPNPQSVKFLPGRAVLDDRFTTGVDFTPSSEEVRRSPLAKKLFQIEGVSRVFFGKDFISITKLDDEDWDALNAEIFATIMDFFASNEEVMSDEPVITDTTILPDDDEVVAMIKELLEQRIRPSVQDDGGDIFYKGFNEKTGMVSVQLAGSCAGCPSSSVTLKHGVENMLKHYIPEVRGIEEWVDEELNAVNEKEFRSLEDKLRSVGIPSE 272
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BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Match: A0A662XYG1_9STRA (Nfu_N domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYG1_9STRA)

HSP 1 Score: 274 bits (701), Expect = 3.460e-81
Identity = 135/219 (61.64%), Postives = 167/219 (76.26%), Query Frame = 3 
Query:  897 RTFFIQTESTPNPNSLKFLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFITISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGVPWE 1553
            R+ FIQTE TPNP S+KFLPGR VL     TG+ +T G +E R+SPLA  LF+++ V  VF G DFI+++K ED  W  L   +F  IMDFFA  + V+ +EPV+TDTTIL +DDEVV MIKELL++R+RP+VQ+DGGDIFYKGFD  TG V VQLAGSC+GCPSS+VTLK+GVENML HYIPEV  +E  EDEEL  +NQKE   LE++L+S G+P E
Sbjct:   57 RSMFIQTEPTPNPQSVKFLPGRAVLDDRFSTGVDFTPGSEEVRRSPLAKKLFQIEGVVRVFFGKDFISVTKTEDEDWDALNAEIFATIMDFFASEEEVMSDEPVITDTTILPEDDEVVVMIKELLEQRIRPSVQDDGGDIFYKGFDEKTGLVLVQLAGSCAGCPSSSVTLKHGVENMLKHYIPEVRGIEEWEDEELNAINQKEFMTLEEKLRSVGIPSE 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1359.2217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX5_ECTSI5.890e-11777.02Nfu_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A1V9Y8Q5_9STRA4.260e-8564.86Iron-sulfur cluster scaffold protein Nfu n=1 Tax=T... [more]
A0A3R7KYD2_9STRA1.270e-8458.89Nfu_N domain-containing protein n=2 Tax=Phytophtho... [more]
A0A1V9Y986_9STRA1.360e-8461.30Iron-sulfur cluster scaffold protein Nfu-like prot... [more]
A0A8K1CQF8_PYTOL1.240e-8364.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C4T2_PYTIN3.690e-8361.36Iron-sulfur cluster scaffold protein Nfu-like prot... [more]
A0A485KKH5_9STRA2.660e-8261.57Aste57867_8521 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0W9T7_9STRA4.810e-8262.04Nfu_N domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A0P1ARC0_PLAHL1.630e-8160.26Iron-sulfur cluster scaffold protein nfu-like prot... [more]
A0A662XYG1_9STRA3.460e-8161.64Nfu_N domain-containing protein n=2 Tax=Nothophyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1359contigH-paniculata_contig1359:9055..15070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.9
Seed ortholog evalue5.6e-100
Seed eggNOG ortholog2880.D8LAX5
Preferred nameNFU4
KEGG koko:K22074
Hectar predicted targeting categorymitochondrion
GOsGO:0000166,GO:0003674,GO:0005198,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0017076,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030554,GO:0031163,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051186,GO:0051235,GO:0051238,GO:0051604,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0097428,GO:0097577,GO:0098771,GO:0106035,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.NFU1 iron-sulfur cluster scaffold
EggNOG OGsCOG0694@1,KOG2358@2759
Ec32 ortholog descriptionScaffold protein Nfu/NifU, N-terminal
Ec32 orthologEc-27_006080.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons6
Model size3022
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1359.2217.1prot_H-paniculata_contig1359.2217.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1359 9702..13607 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929075.2688165-UTR-H-paniculata_contig1359:9054..97011622929075.2688165-UTR-H-paniculata_contig1359:9054..9701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1359 9055..9701 +
1691480722.2325332-UTR-H-paniculata_contig1359:9054..97011691480722.2325332-UTR-H-paniculata_contig1359:9054..9701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1359 9055..9701 +
1622929075.352451-UTR-H-paniculata_contig1359:13607..150701622929075.352451-UTR-H-paniculata_contig1359:13607..15070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1359 13608..15070 +
1691480722.2999034-UTR-H-paniculata_contig1359:13607..150701691480722.2999034-UTR-H-paniculata_contig1359:13607..15070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1359 13608..15070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929075.2804406-CDS-H-paniculata_contig1359:9701..99241622929075.2804406-CDS-H-paniculata_contig1359:9701..9924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 9702..9924 +
1691480722.2436824-CDS-H-paniculata_contig1359:9701..99241691480722.2436824-CDS-H-paniculata_contig1359:9701..9924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 9702..9924 +
1622929075.2906375-CDS-H-paniculata_contig1359:10407..105611622929075.2906375-CDS-H-paniculata_contig1359:10407..10561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 10408..10561 +
1691480722.2520647-CDS-H-paniculata_contig1359:10407..105611691480722.2520647-CDS-H-paniculata_contig1359:10407..10561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 10408..10561 +
1622929075.3022919-CDS-H-paniculata_contig1359:11225..113101622929075.3022919-CDS-H-paniculata_contig1359:11225..11310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 11226..11310 +
1691480722.2669184-CDS-H-paniculata_contig1359:11225..113101691480722.2669184-CDS-H-paniculata_contig1359:11225..11310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 11226..11310 +
1622929075.3120427-CDS-H-paniculata_contig1359:11935..121061622929075.3120427-CDS-H-paniculata_contig1359:11935..12106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 11936..12106 +
1691480722.2748833-CDS-H-paniculata_contig1359:11935..121061691480722.2748833-CDS-H-paniculata_contig1359:11935..12106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 11936..12106 +
1622929075.327637-CDS-H-paniculata_contig1359:12716..128841622929075.327637-CDS-H-paniculata_contig1359:12716..12884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 12717..12884 +
1691480722.2835236-CDS-H-paniculata_contig1359:12716..128841691480722.2835236-CDS-H-paniculata_contig1359:12716..12884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 12717..12884 +
1622929075.3388374-CDS-H-paniculata_contig1359:13496..136071622929075.3388374-CDS-H-paniculata_contig1359:13496..13607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 13497..13607 +
1691480722.29183-CDS-H-paniculata_contig1359:13496..136071691480722.29183-CDS-H-paniculata_contig1359:13496..13607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1359 13497..13607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1359.2217.1

>prot_H-paniculata_contig1359.2217.1 ID=prot_H-paniculata_contig1359.2217.1|Name=mRNA_H-paniculata_contig1359.2217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=304bp
MSCTLRHLRPRQLAVRINIPSLGRSSCVAPAATTTATATATKAATSLGDR
RRLLHIVAAGGPTGPSRLKNVRHRATPWIAQQSRTFFIQTESTPNPNSLK
FLPGRPVLPADHGTGIYYTRGDKEHRQSPLASVLFRLDSVTAVFLGSDFI
TISKQEDGAWPLLKPLVFGAIMDFFAEGKAVILNEPVVTDTTILDDDDEV
VAMIKELLQERVRPAVQEDGGDIFYKGFDPMTGTVQVQLAGSCSGCPSST
VTLKNGVENMLMHYIPEVTSVESVEDEELIDVNQKEAKALEDRLKSAGVP
WEP*
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mRNA from alignment at H-paniculata_contig1359:9055..15070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1359.2217.1 ID=mRNA_H-paniculata_contig1359.2217.1|Name=mRNA_H-paniculata_contig1359.2217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6016bp|location=Sequence derived from alignment at H-paniculata_contig1359:9055..15070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAACCTCCCCAACCCACCCTCGAAGCCGAAAACCAACCCGCGGAAACC
TTGACCCAATTTTCCTCCTCGAGTATTTTCCAGTTACTGTCTATTTACGG
TCGAATAAGTAGCAGGTGACAAAAAAATCCATATACATCCAAACACAAAC
TCGAGGCTGAAGGTACAGTTTGCATCGCACAGAGGACCAGCCCCGACTGC
TGCAGACAGCACGCCATACCGTAGAGCAGTATACCGACGGAAGAATCGAG
GTTCGACTTTGTAGATGATAGACCGGTTTTACCTTATGGACTGTTTCAGT
TCGCTGATCGTGGCATCAAGAGAGATTTCCACCTTGCCAGCTGCCCTGTC
CGAAGAAGTAAATTTGATGTTGATGCTGGCCAGGCCAGAATCAGCGCTCT
CTGCTTCATCGCGTACGTTTTCTGCCATGACTGCTGTATGCACTTCGTCA
AGGGCTTATTAAAGTGACGCAACAGACGTGTATGACATGCGAAACACGTT
GATGAGGTTTGTCGTGTACAGTAAATTCTACCGTCATAGTTTACCATTGA
CTTGTGCAAGGAGAGCCATTATCCATCATCTCGATCACAAATTGTTGCTG
GCATTGATGCTGGCTGGGGCGCTCTGCACTGGCGTTCCTCACTTGTGATG
TCTTGTACTCTAAGGCATCTCCGGCCTCGACAGTTAGCCGTGCGAATCAA
CATACCTTCGCTGGGAAGATCGTCGTGCGTTGCCCCAGCGGCAACGACAA
CAGCAACAGCAACAGCAACAAAAGCTGCAACATCACTAGGAGACAGAAGG
CGGCTGCTGCACATAGTTGCAGCAGGGGGACCAACAGGACCATCGAGATT
GAAGAACGTCAGGCATCGCGGTGAGGACTAAGACTAGATAGCCTTAGCAA
TGCGGACGGAAATAATTGGATGTGGTGCTCACCTCTTACTACTCTGCGTT
ACTTGGCTGACGCACACAATTGTCTTTCATAAAACGTTTATAGACGGTGC
AGGATGTGACGGGCGCAAAACGGAAACATCCCGCACTTCGCGTGTCCCAT
ATTGTCCTTTCTCGACTACATTACAGTCAGTACAGTATCTGTACTCGCCC
CTTTAACTAAAGTACAACCCTCTTAGAAGCAGAGTACACCCGACCCTCCA
AGAGCCTTGCAGTCAATATATGCAGTTTCACCCAAGCCACCTTGCACAGT
ATCTCCCTCCCCTAACTTCCCTTCCTCCTATTCTAACTCTCGCGTCCCTG
GCCCCGACATCCTGTGCCCTGCACCCCGCACACTCCCGATTATCCATCAC
GCCGACCTCATTCCGCGCGTCTCCCCGTACATCCCGCACACGAAAACACC
AAGCGACCCCATGGATAGCGCAACAATCACGAACATTCTTCATCCAAACG
GAGTCGACGCCTAACCCCAACTCCCTCAAGTTCCTTCCCGGGCGACCTGT
TCTCCCCGCGGACCATGGCACCGGCATATACTATACCCGAGGAGACAAAG
AGCACAGGTGCAAGGAGTTCTAGGATAGCGATGCCCGGGGGACAAAGAAT
GGAAGCCCGCACGAATAGCCGGGAATTTTCCTGGGCGCGCGCGACGGTGG
GGAGTGGTTCGGGATGTTTTGGTTCAGGTTATGTTTGTCGTGATCAAGGC
ATGATATTGTACTTGCGGGTTGCTTAGCGTTGTTTTGTCTGAAACGCCGA
CCAATGAGCTCTCGATTTCATTTTCATCGTTTTTTTCAATATTTTTGCGT
TAGTTAAATATCACATTTCGACGACGGAAGTCGTATGTTGAGTCCATATG
TAGGACGCTAAGTTTTCATCATTGAATAGGCACACGAGCTAACAAGAGGG
TTGACGGACTGTGTGTGTCTTGTTCTACCCTGGACAACTTGTTTTTGTTG
CCCGACGGATCTGCTTGTGTGTGTGTCTCGTTCTGTACTAGATATGTCCA
CAGTATTTATCATTCGAAGTACCCGATTCCGCACTCGGCGTAATTGACTC
GCAAAACATCTCAGCTGCTGAGACGTTCCTTCAAGCTATCCCATCGCTTT
GTCTGATCTTCGTCTGCTCGAGCGCGCAGTTGCTAATCGTGCAGAGAACT
GATCTACTGATTCTTTATCCCAGACTCACGTTTGACCTTTGGCCCGTTCC
TGTCCCTCCGTGTGTGCGCAGACAGAGTCCCCTGGCGTCTGTGCTATTTC
GACTGGACAGCGTCACAGCCGTTTTTCTCGGATCCGACTTCATCACAATA
TCAAAGGTGATCGGTCGTGTTTCGCTGGCTCTTGAGCTCACACCACCGCT
GACGGGTACGTCGTTATGTCTGGTGCAGTATCTCCGAGTTGGATGTAGTG
TTGATAGTTGAAAAAAGCTCTACACACGAAAAAATATGCCTTTTGAATAT
ACGTGTTTTTATCTGCAACGCTGACTTGCTTGTCGTCCATACCATACCCC
CCCCCAAAAAATTGGATACAGTCACTCAGCAACATGAAATACGTCATCAT
CATCCTCTGGGAGTTTTGATGACGTCACTTTTTCTAGTAGTATGTTCTAC
TACAATTATTATTACTACTACTTTCAGCGATGCCCAATATCCCCTCCCGT
TCTACTGAAGATGAGTATATTCTTCGGCTGTGAATGCAGGCTACAAAACC
CAGCATATTCTACGCTTGCAGTATTGTAGAATATGCTTCAGAAACAGCTC
GATTGACTGCTTTTAGAGGGACCTTGTATGACATATGTTCTTGTCCGTGT
GAATACTCAGTACTATGCCATGCAATGTCCACTTACTCTCTACGGGAGTG
ATACAGTTGGACTCCCTGTTGAATTCAATTTCTCGTCCCTTGCCCTCCCC
ATTATGTGGCTGCTTCGCTTGACTACTTCAGCAAGAGGACGGTGCCTGGC
CGTTACTGAAACCTTTGGTGTTTGGAGCGATAATGGACTTTTTTGCCGAG
GGCAAGGCGGTGATCTTGAACGAGCCAGTTGTGACCGACACGACTATTCT
GGATGACGACGACGAGGTGGTTGCTATGATCAAGGAGCTCCTGCAAGAGC
GGGTAAGTAAATGGGCCCTAAGGTAGCCTTGATGCATTTACCAGTGTTTT
TGAATCAAGCTATGGAGAATTGTGCTGGTATTACGCTGACACTGGGATCG
TTGAGGGGTGACGGTTTCGTTGCATCCTTCAGCTCTTTCGTTTGGTGTAG
CCCGCAAGGGTAATGAACAACAACGGTAAAGACTTACCTTGTTAGTCCTG
TTTTTCATCGGACAGTACATGTTTTCGCTCGGCTCTTGTCGTGGAGGAGT
GGCGACAACTGTGGTCGCAACATGTTTTTGGTGTTGAAGCAAAGAAATGA
AGGCAATAGTCTGGTGTACCCAGTCGCTTGTTCGATACACACTATCATGT
TTGATACACGCTGCTGTACTCTAATCCTACCAATCCATACATACCTCTCT
GCAGCCATCACAACTTTTGCTTTTTGTGTACGTTTTTTGTTTACATCATT
CCCTCACGTGGTCGATGCACCACGGGCGAACGTGGGTGGGCAAAAGTAGG
TTTAGTTCGTTCGTGCAAGTTGTCGATGATCAGTGCCTTGCTCAGCTTGC
ATGTCATCACACACCGCTCCCCGTCTCGCCCTTCGTCCTATCTCCCCCGA
ATTTCCGAACAGGTACGACCAGCAGTACAAGAAGATGGGGGGGATATTTT
CTACAAGGGCTTCGATCCCATGACAGGCACCGTGCAAGTTCAATTGGCTG
GTTCTTGTTCGGGATGCCCGAGTTCAACAGTTACCCTTAAGAATGGCGTG
GAAAACATGCTAATGCACTACATTCCAGAGGTATGTTTTTCCCCATATTT
TCCAGTGATAGGATCTTCGTTTGTTGGTGAAATTTGGATACGTGAGAATA
GGATGGTTTAGTTGTTGCGCCTGATATTTTGCTGACAGACGAATTTTTGT
TTTTTCAATTTGGAATGCGTCTCTGTTGGTCATTCGTTAGCTGGTTGTGT
AATCGATCACGCGATGCGGCTGGGTCAATAGACGACACAGTAGGTTTGTT
ACATACTTCGGTTGACAACATATCGGCAGCCCCAAGTCTAGCACGGAAAT
TGTGCGGCAAAGGGTTTCCATAGATTGACTCGATTGTCCCTACCAGCAGG
CCTATCATTCGGTATCGACCATCCGTAGCTTCTTACCCCGTGGTCCTTTC
CCCCCCTCACGTCCGGAAACCATGGAGTACTAAACGCATTTCGCTTGCCT
TCGACACTCAAGCGTAGTGTAGCATGACCGCAATCCATATGTCATGGCGA
GCGCTCTTGATCGTGTGTTGCATTTTCTTTCCTTTCTCTGATAGCACGCC
TTGTGCAGACTTTCTATTTTAATTTTCCCCGCGGAAATTTCACGACTATC
ATTCCGCCGTATTTTTGCTATCTTTGCAAACCTGCTTGTCAGGTTACCTC
TGTTGAATCTGTAGAAGACGAGGAGCTTATTGATGTCAACCAAAAGGAAG
CGAAGGCGCTGGAAGATCGACTAAAGTCGGCAGGAGTACCCTGGGAGCCT
TGATGGCTTGAGCATACACATTGATGGAATCCATTCGTCGATTCTCCACA
CATAGCGGAACGTTGGAAGCGGCAACGACACTGAGTACGAAAGACGTCGA
CGCTTGCAGCAGTGATGAGAAAAAATTGCGCTCTCGCGCCCGTACTCACG
TTCAAGCTGCGCTTATTGCAGCCTTCACTGTTGCCATCGATGGCAATTTG
AAGGGAAGATGTCGCCGATCTCGCAACCCACGCCCATTAGCATTAAGAAG
GAGGAAAGCTAGTCACACCTTTAGTGCTGCGCCAGTTCTCTCACGTGTAC
TGGCTGTCTCCGAGGAACATCTCTGTGCGACAGACAGTATCACATACTTG
ACCTACTGGCTGGGGTGTTGACTGGCCGTAGGCTCTCAAATCCGGGGCTC
TTCTTGAATTTTGCAACGCATAGATAGATCCAGTGGTTTGTTTCCAGCTC
TTCGCACATGTCCTCTCCAAAAGATAGTTGCCATATTTTTCCTCTGTTCG
AGCGGGGCTGCAAGTCGAGGCCGGCAGCTGATACCGAATTGCCCTGTTTT
GGAACTGCATTGGCTTGTTGTAACACGTCACATTGTGATGCTGTTCTTTG
TCAATAATAGCGGTGTTGATTTGTTGGCGTCTCCCTCCCAATCATGGTAA
ACGTAGTTGCCACGTTCAGCTCTTCGATCTAGTTTTAGGATAGGTGCTCA
GACCAACGATTAGTTCACTGTTGAAAGTAGAATGCTCCGATGCGCTTGTG
TAGGGAAACGTGAAACGGAAACCTACAGGAAATGCATGGTAGGTCCGCGG
ATTCTGCTAGTATCCTTCCTTTCGCACTTCATTGGGTTCATGACAGTCTC
CCAGATAATGCGTACAGAGAGTCCCAAAGTGAAGTAAAATCATACGACAA
ACAAAGATTCAGCGTGAGTCTGAGTTCACTATGTATTTCCCAGACTAGCT
GCATTCTTTGTTTCACCTCCGTAGACTAAATGATGAAAACATATGAGAAA
AACGGCGTATATGAGACGATGATGGGGAAAGGGAAGCGCCGCTTTTCAGG
AGCATAGTAGGGACCACTCTGCGTGCAACGACTGCTCGATAGAAGCCAGT
TGTTAGATTGTTGGATTCCTTTTTTTCTCCCGAAACGGCTTGCCGCGCCC
AAGGGTTTATTTGATAAGGATCTCGTCTCACAAAACTAGTCCGTCTTTTC
CTTTTAATATCTATTTCTCACTCATCTCACTTCTACCGTTGGGAATAGTA
CCAGCAGCAACGTGGTAGCAATGGGTACGCATCTAATCCTTCCCTACTTG
CTTGTGGTGAGAAGCCGAGCGTCATGCTGAATCTGAGAATTCCAACGGAA
TAAACCTAGCATATTCCCAAATTAGCGAAATCTGCAGATCCCGTTGCAGT
CGAGCATCTCAGCCAAATCCGATTCTTACGTAGAACCGGGCACAGTGACC
TCGCAGTTAACGTGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig1359:9055..15070+

>mRNA_H-paniculata_contig1359.2217.1 ID=mRNA_H-paniculata_contig1359.2217.1|Name=mRNA_H-paniculata_contig1359.2217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1824bp|location=Sequence derived from alignment at H-paniculata_contig1359:9055..15070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTGTACTCTAAGGCATCTCCGGCCTCGACAGTTAGCCGTGCGAAT
CAACATACCTTCGCTGGGAAGATCGTCGTGCGTTGCCCCAGCGGCAACGA
CAACAGCAACAGCAACAGCAACAAAAGCTGCAACATCACTAGGAGACAGA
AGGCGGCTGCTGCACATAGTTGCAGCAGGGGGACCAACAGGACCATCGAG
ATTGAAGAACGTCAGGCATCGCGATGTCTTGTACTCTAAGGCATCTCCGG
CCTCGACAGTTAGCCGTGCGAATCAACATACCTTCGCTGGGAAGATCGTC
GTGCGTTGCCCCAGCGGCAACGACAACAGCAACAGCAACAGCAACAAAAG
CTGCAACATCACTAGGAGACAGAAGGCGGCTGCTGCACATAGTTGCAGCA
GGGGGACCAACAGGACCATCGAGATTGAAGAACGTCAGGCATCGCGCGAC
CCCATGGATAGCGCAACAATCACGAACATTCTTCATCCAAACGGAGTCGA
CGCCTAACCCCAACTCCCTCAAGTTCCTTCCCGGGCGACCTGTTCTCCCC
GCGGACCATGGCACCGGCATATACTATACCCGAGGAGACAAAGAGCACAG
CGACCCCATGGATAGCGCAACAATCACGAACATTCTTCATCCAAACGGAG
TCGACGCCTAACCCCAACTCCCTCAAGTTCCTTCCCGGGCGACCTGTTCT
CCCCGCGGACCATGGCACCGGCATATACTATACCCGAGGAGACAAAGAGC
ACAGACAGAGTCCCCTGGCGTCTGTGCTATTTCGACTGGACAGCGTCACA
GCCGTTTTTCTCGGATCCGACTTCATCACAATATCAAAGACAGAGTCCCC
TGGCGTCTGTGCTATTTCGACTGGACAGCGTCACAGCCGTTTTTCTCGGA
TCCGACTTCATCACAATATCAAAGCAAGAGGACGGTGCCTGGCCGTTACT
GAAACCTTTGGTGTTTGGAGCGATAATGGACTTTTTTGCCGAGGGCAAGG
CGGTGATCTTGAACGAGCCAGTTGTGACCGACACGACTATTCTGGATGAC
GACGACGAGGTGGTTGCTATGATCAAGGAGCTCCTGCAAGAGCGGCAAGA
GGACGGTGCCTGGCCGTTACTGAAACCTTTGGTGTTTGGAGCGATAATGG
ACTTTTTTGCCGAGGGCAAGGCGGTGATCTTGAACGAGCCAGTTGTGACC
GACACGACTATTCTGGATGACGACGACGAGGTGGTTGCTATGATCAAGGA
GCTCCTGCAAGAGCGGGTACGACCAGCAGTACAAGAAGATGGGGGGGATA
TTTTCTACAAGGGCTTCGATCCCATGACAGGCACCGTGCAAGTTCAATTG
GCTGGTTCTTGTTCGGGATGCCCGAGTTCAACAGTTACCCTTAAGAATGG
CGTGGAAAACATGCTAATGCACTACATTCCAGAGGTACGACCAGCAGTAC
AAGAAGATGGGGGGGATATTTTCTACAAGGGCTTCGATCCCATGACAGGC
ACCGTGCAAGTTCAATTGGCTGGTTCTTGTTCGGGATGCCCGAGTTCAAC
AGTTACCCTTAAGAATGGCGTGGAAAACATGCTAATGCACTACATTCCAG
AGGTTACCTCTGTTGAATCTGTAGAAGACGAGGAGCTTATTGATGTCAAC
CAAAAGGAAGCGAAGGCGCTGGAAGATCGACTAAAGTCGGCAGGAGTACC
CTGGGAGCCTTGAGTTACCTCTGTTGAATCTGTAGAAGACGAGGAGCTTA
TTGATGTCAACCAAAAGGAAGCGAAGGCGCTGGAAGATCGACTAAAGTCG
GCAGGAGTACCCTGGGAGCCTTGA
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