mRNA_H-paniculata_contig13589.2215.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13589.2215.1
Unique NamemRNA_H-paniculata_contig13589.2215.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13589.2215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13589contigH-paniculata_contig13589:3660..3965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size307
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.8844905-UTR-H-paniculata_contig13589:3659..36621622929074.8844905-UTR-H-paniculata_contig13589:3659..3662Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13589 3660..3662 +
1691480722.1527221-UTR-H-paniculata_contig13589:3659..36621691480722.1527221-UTR-H-paniculata_contig13589:3659..3662Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13589 3660..3662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.894804-CDS-H-paniculata_contig13589:3662..39651622929074.894804-CDS-H-paniculata_contig13589:3662..3965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13589 3663..3965 +
1691480722.1628273-CDS-H-paniculata_contig13589:3662..39651691480722.1628273-CDS-H-paniculata_contig13589:3662..3965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13589 3663..3965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13589.2215.1prot_H-paniculata_contig13589.2215.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13589 3663..3965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13589.2215.1

>prot_H-paniculata_contig13589.2215.1 ID=prot_H-paniculata_contig13589.2215.1|Name=mRNA_H-paniculata_contig13589.2215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MISGPWLVALFFEKSLLLPYAIIHGGFLECYCRRCHSRRGVGVMHASLLY
QSMSSEGADVGVGAQNHRRDVIHFVVHLPQPLRHQLHLSFEALKSVHIGG
D
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mRNA from alignment at H-paniculata_contig13589:3660..3965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13589.2215.1 ID=mRNA_H-paniculata_contig13589.2215.1|Name=mRNA_H-paniculata_contig13589.2215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig13589:3660..3965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATGATATCGGGGCCGTGGTTGGTGGCGCTCTTCTTCGAAAAGAGTTT
GCTCCTGCCGTACGCCATAATCCATGGGGGGTTCCTGGAATGCTACTGTA
GGCGGTGTCACAGTAGACGCGGGGTAGGGGTCATGCACGCCTCCCTCCTT
TACCAAAGCATGTCGAGCGAAGGTGCCGACGTTGGAGTAGGCGCTCAAAA
TCATCGCCGTGATGTCATTCACTTTGTTGTCCACCTTCCTCAACCCCTCC
GACACCAGCTCCATCTCTCTTTTGAAGCCCTTAAATCGGTCCACATTGGT
GGGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig13589:3660..3965+

>mRNA_H-paniculata_contig13589.2215.1 ID=mRNA_H-paniculata_contig13589.2215.1|Name=mRNA_H-paniculata_contig13589.2215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig13589:3660..3965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATCGGGGCCGTGGTTGGTGGCGCTCTTCTTCGAAAAGAGTTTGCT
CCTGCCGTACGCCATAATCCATGGGGGGTTCCTGGAATGCTACTGTAGGC
GGTGTCACAGTAGACGCGGGGTAGGGGTCATGCACGCCTCCCTCCTTTAC
CAAAGCATGTCGAGCGAAGGTGCCGACGTTGGAGTAGGCGCTCAAAATCA
TCGCCGTGATGTCATTCACTTTGTTGTCCACCTTCCTCAACCCCTCCGAC
ACCAGCTCCATCTCTCTTTTGAAGCCCTTAAATCGGTCCACATTGGTGGG
GACATGATATCGGGGCCGTGGTTGGTGGCGCTCTTCTTCGAAAAGAGTTT
GCTCCTGCCGTACGCCATAATCCATGGGGGGTTCCTGGAATGCTACTGTA
GGCGGTGTCACAGTAGACGCGGGGTAGGGGTCATGCACGCCTCCCTCCTT
TACCAAAGCATGTCGAGCGAAGGTGCCGACGTTGGAGTAGGCGCTCAAAA
TCATCGCCGTGATGTCATTCACTTTGTTGTCCACCTTCCTCAACCCCTCC
GACACCAGCTCCATCTCTCTTTTGAAGCCCTTAAATCGGTCCACATTGGT
GGGGAC
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