mRNA_H-paniculata_contig13579.2210.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13579.2210.1
Unique NamemRNA_H-paniculata_contig13579.2210.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13579.2210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13579contigH-paniculata_contig13579:4506..6838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size185
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13579.2210.1prot_H-paniculata_contig13579.2210.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13579 4506..6809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.1604848-CDS-H-paniculata_contig13579:4505..45621622929074.1604848-CDS-H-paniculata_contig13579:4505..4562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13579 4506..4562 -
1691480721.6622407-CDS-H-paniculata_contig13579:4505..45621691480721.6622407-CDS-H-paniculata_contig13579:4505..4562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13579 4506..4562 -
1622929074.1733015-CDS-H-paniculata_contig13579:6710..68091622929074.1733015-CDS-H-paniculata_contig13579:6710..6809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13579 6711..6809 -
1691480721.6774638-CDS-H-paniculata_contig13579:6710..68091691480721.6774638-CDS-H-paniculata_contig13579:6710..6809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13579 6711..6809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.1846344-UTR-H-paniculata_contig13579:6809..68381622929074.1846344-UTR-H-paniculata_contig13579:6809..6838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13579 6810..6838 -
1691480721.686464-UTR-H-paniculata_contig13579:6809..68381691480721.686464-UTR-H-paniculata_contig13579:6809..6838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13579 6810..6838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13579.2210.1

>prot_H-paniculata_contig13579.2210.1 ID=prot_H-paniculata_contig13579.2210.1|Name=mRNA_H-paniculata_contig13579.2210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MEGSEAKFSVPVTFEGNAILEGYPGAALVADGVVTFEHAAHFVRNRAYSR
EA
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mRNA from alignment at H-paniculata_contig13579:4506..6838-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13579.2210.1 ID=mRNA_H-paniculata_contig13579.2210.1|Name=mRNA_H-paniculata_contig13579.2210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2333bp|location=Sequence derived from alignment at H-paniculata_contig13579:4506..6838- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTCCGGATGGGCGAGTTTTCGAAGTTATGGAGGGATCCGAGGCTAAG
TTTTCTGTCCCAGTTACCTTCGAAGGGAACGCGATATTGGAGGGGTACCC
TGGCGCGGCGCTTGTAGCTGATGGGGTGGTGAGTGAGAGAATTCCGGCAC
ACGCCCGCTACTGTTGCGTTGAAAGCATTCCGGACAACGTTAGTTAGTGT
ATAGTACCGGCCAGCGGACAAGAACTGACCAAGCAACTATTGCTCACTTT
TTGTTGGCGCGCGAGAAATCTGGCCCAACAAAAAGGACTCAAATTGTGAC
CCTATTCAAATTCCTACGTAAAAGTAAGAAACAGCACTGGTGGTGATTCT
TGCCAAAATACAGTTTAGAGCCTCACCCGGATTAAGAGTTCCTTGTTATC
GAACTCGCACTAAATTCGGTATTCGTTGAAAGGCGCTTGGATTACTGCCA
TATATATCAAGCATATGTCATTAGAAGACACATTACCCAGAACAAAATTA
AACGATATTCATATTTCATTCTTTAGTAATGTTCGTTGTTCTACTCGAAG
CTAGGCCACATGAAGCTGACACCCTCGCTCAGGCAACAACATTCAGAGCA
CCATATGCAGATCGTCACGACATGTATTCGATGTCTCAAATATGGACTCT
TGGTCTTCTTGCCCCTTCCTTTGGATGACTTCATGACTGTTAACATGATA
TGGGTGAAATGGAGAACGAACTTTTTTTGGAGAGTGAGCTTCATATTTTT
GTGTTGATGCCAACACCTTTTCCGCCTGGTGTCGTTTCCGCCCGACGTGG
CCGATGCGATTGGTTGATAGCTCAATCAAAAGCTCTCAGTCACCCGATGA
CGTCAATACCTCAACTGACGGAATCCGATCCATCGTTCGGAATTTACGGC
AGTGGCGAGAATGGGCGGAAAACCGGTTAATCCATTCGGCACGAAATCTT
TTAATCGTTGCTCTTGCTTGCAGCAGCCCAGGCAAGCCTTTCAATCTGCT
GATACTGGCCACCGAGACTACCGGTGACCGTATAGCACATATCTACGTGC
TGCCATGAGCAAAGCCGTTTGTTTGAGCCGCTGCACGCAATCTAACTCGT
CGAAATGAGCACGCTAGAACGAGTCACGTGAAAAAAAGTAAAGATTTTAG
GCTCGTTTTCCCCCCAAAAATTGTTCTCCCTTTCACCAAAATCATGTTTG
TTGCTCCTTGTCCACAGTCCATCCGTCACTCCCGACGTGTTCTACTTGCC
TATCGCAACGGAAAATGAAACATGTAAATATCAGAAGGCTGTACAAATCA
TTTGTCTGGTTCGGCAGCAAGAAATAAAGTTGTGGTGGGTGGTGGTAGGC
CAACTGTTGCTTTGTTCTCGTCAGAAACAAACCGAGAAATGGCGAAATAA
ACAAATCAAGAAAAACGGGTGTCTCCTTCTGCTATCCAGCTGAAAAATTC
CTTCCAAGATCGCTGCAGCAACACGCCAGACTGGGAAAGAAGTTAGTTGT
GTGCGCATAAATGAATCGTTAGGATTCACGATTACGTCTAATGCGGACGG
CCCCAGCAGGTATCTAGCTGAAACCTCAAAGTAGGCCAGGGTTAGGATCA
ACCTTAGAGCTACTCGTATCTACAGTGTGTAGAATCAGGCATTCGTTAAA
ATGATTATGCTGTTTTGCAGTTTGTTTTGGAGTTCCGAACCAATTTTTTG
TTAGTATATAGCTCTACAGCACTAGGCGTGGAGGATCGTGTGATGTACTT
ACGGAATTTTATATTGCCTACGAAGGCGCCATTTCGTTGTTCGCGCGTCT
GCAATTCAATGGTCGTACACGATCTATTTGATCTCTTCCGTAATGCTCTA
CGATAGGCAGTAAGCGCTTTCCTCCGGCTAGGGTATAGATTAACTCGTTC
CTGTGCGGCCATTCGGAGTCTTCGATTCCTATGGTGTTACTCGATACAAG
CCCTGGAGTAAACCTACCTGGCAGATTTGAACCCTATTTAGCACCAACTT
ACCAGTTCGATCGTTAAAAATATTTTTTAACTTGATCGAACAGAAACACA
CAGATATATACTATACAAGCAGCTGTCAAACATGAAAGAAATGGCCACTC
TTCGGCACTCGAAGGGTCAAGCAACCGACCAACCAGCCAATCAATGAAGC
AACCCAAACTCTGCCGGCTGTACCGTAAGTATATCCCCCTTAGTCCGTTC
CGTTTATGGATAAGTAATCCAGCAGCTTGAACGTATGCCCCCTCCCCCTC
GCGCGCTACTTACTCCCTGCCGACAGGTAACGTTCGAACACGCCGCGCAT
TTTGTACGAAACCGAGCGTATAGTCGCGAAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig13579:4506..6838-

>mRNA_H-paniculata_contig13579.2210.1 ID=mRNA_H-paniculata_contig13579.2210.1|Name=mRNA_H-paniculata_contig13579.2210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig13579:4506..6838- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGATCCGAGGCTAAGTTTTCTGTCCCAGTTACCTTCGAAGGGAA
CGCGATATTGGAGGGGTACCCTGGCGCGGCGCTTGTAGCTGATGGGGTGA
TGGAGGGATCCGAGGCTAAGTTTTCTGTCCCAGTTACCTTCGAAGGGAAC
GCGATATTGGAGGGGTACCCTGGCGCGGCGCTTGTAGCTGATGGGGTGGT
AACGTTCGAACACGCCGCGCATTTTGTACGAAACCGAGCGTATAGTCGCG
AAGCGGTAACGTTCGAACACGCCGCGCATTTTGTACGAAACCGAGCGTAT
AGTCGCGAAGCG
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