mRNA_H-paniculata_contig13577.2208.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13577.2208.1
Unique NamemRNA_H-paniculata_contig13577.2208.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13577.2208.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.490e-21
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:    5 WRVGEETAFATRLREKDQALEEKWAVRETARRRDMTQAQQEYGKLEGKLRKALSEVEARERGLKTREEAWRT 220
            WRV EE  FA RLREKD+ALE+KW  RE  RRR+++ AQ +Y KLEGKLRKALSEV ARER LK REE+W+T
Sbjct: 1022 WRVVEEAKFAKRLREKDEALEQKWEAREATRRRELSHAQADYSKLEGKLRKALSEVGARERQLKAREESWKT 1093
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BLAST of mRNA_H-paniculata_contig13577.2208.1 vs. uniprot
Match: A0A835Z851_9STRA (DUF3668 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z851_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.130e-11
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:    5 WRVGEETAFATRLREKDQALEEKWAVRETARRRDMTQAQQEYGKLEGKLRKALSEVEAR 181
            WR  EE AFA +L  KD ALE++WA R   RRR + QAQ EY +LEGKLR+AL++VE R
Sbjct:  927 WRAREEAAFARKLAAKDAALEQRWAQRXAERRRSLAQAQAEYARLEGKLRRALTDVEVR 985
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BLAST of mRNA_H-paniculata_contig13577.2208.1 vs. uniprot
Match: A0A6H5LE02_9PHAE (DUF3668 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE02_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.740e-8
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 2 
Query:    5 WRVGEETAFATRLREKDQALEEKWAVRETARRRDMTQAQQEYGKLE 142
            WRV EE  FA RLREKD+ALE+KW  RE  RRR++++AQ +Y K++
Sbjct:  716 WRVVEEDKFAKRLREKDEALEQKWEAREATRRRELSRAQADYSKVD 761
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13577.2208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXH9_ECTSI1.490e-2169.44Centrosomal protein 120 n=1 Tax=Ectocarpus silicul... [more]
A0A835Z851_9STRA1.130e-1159.32DUF3668 domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5LE02_9PHAE9.740e-858.70DUF3668 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13577contigH-paniculata_contig13577:2475..5562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size224
Cds size222
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13577.2208.1prot_H-paniculata_contig13577.2208.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13577 2475..5560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.834922-CDS-H-paniculata_contig13577:2474..25261622929073.834922-CDS-H-paniculata_contig13577:2474..2526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 2475..2526 +
1691480721.6209242-CDS-H-paniculata_contig13577:2474..25261691480721.6209242-CDS-H-paniculata_contig13577:2474..2526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 2475..2526 +
1622929073.853289-CDS-H-paniculata_contig13577:3208..32921622929073.853289-CDS-H-paniculata_contig13577:3208..3292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 3209..3292 +
1691480721.6294806-CDS-H-paniculata_contig13577:3208..32921691480721.6294806-CDS-H-paniculata_contig13577:3208..3292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 3209..3292 +
1622929074.077976-CDS-H-paniculata_contig13577:5474..55601622929074.077976-CDS-H-paniculata_contig13577:5474..5560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 5475..5560 +
1691480721.637163-CDS-H-paniculata_contig13577:5474..55601691480721.637163-CDS-H-paniculata_contig13577:5474..5560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 5475..5560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13577.2208.1

>prot_H-paniculata_contig13577.2208.1 ID=prot_H-paniculata_contig13577.2208.1|Name=mRNA_H-paniculata_contig13577.2208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
TVAGRRRDGVCHTSQREGPGLGREVGREGDCPTEGYDTSAAGVWKVGGKT
AEGLVRGGGKGARAQNSGRSLEDR
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mRNA from alignment at H-paniculata_contig13577:2475..5562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13577.2208.1 ID=mRNA_H-paniculata_contig13577.2208.1|Name=mRNA_H-paniculata_contig13577.2208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3088bp|location=Sequence derived from alignment at H-paniculata_contig13577:2475..5562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGTGGCGGGTCGGAGAAGAGACGGCGTTTGCCACACGTCTCAGAGAGA
AGGTGAACGTGTTCATGTGTTGTCGACACCGCATGTGTGAACGATGGCTT
TATTATGATGAATGAAACGAGCGAATACCATGAGAGATTTGGTGGTTGTT
ATAATGGTTGTTTAGCAACACGACGAATTGGTCTGTGTAGGGTACGGACG
CTATCTACGTGGGAGTGCAGCGAGCTGTTGGTTGGGGGGATATGGATCTT
GACTGAATGGGCTCTTTATCGAGGGCAAAATGCGGAATGCATGGACGTAC
GTTATGTACCCGTGGCTTTACCACTATTGTTATACTACATGTATGGTAGA
GTTCGATGCCCGGCATGATTCAACAGTACCATCGCAGTTCAACAATACTG
TCATAATTCAACACCACCGTCGCAATCCAACAGTACTGTCACAGTCCACC
ATCACCGAAAAAGTTCGCGTCCGGGCTATGTAGAAGTAACACGGTATCGT
CAACGTAAACAGTGGTCATCACTGACGTACCCGTGACCTGTCCACTATAG
CACTCGAACGTTGCTGGATGGAGTTCAGCTGGTGATCAATCAATAGTTCT
CGTTGCATCACCTACTGCAGTCCGACGGTAGGTTGTGTTCTCGTGCTGTT
TTTTTTTTTTTTTTTCCCATTGAGGCGTTATGCATACATGTTTGTGATGT
CGTGTGGCTCTTTTGTTGGGGGGGGGGGAGGCAGGACCAGGCCTTGGAAG
AGAAGTGGGCCGTGAGGGAGACTGCCCGACGGAGGGATATGACACAAGCG
CAGCAGGAGTATGGAAAGGTGTGTGATGAGGGATGGGAGGCGATGGTTCA
CTTAGCTACATCTTTACGAGTGTCGGTGCTATTTCCCCTGATCATGGCGA
AAGAGAGAAACGGCGATATGTCACCATCATTGTCCAAGATCTACTAAGCG
GCTAAGGCCTTTTGCCTACGAGATGTTTTCGGGCTCGTAGATAGCAGGTA
GCTCCTGATATTTTGGATTTGGGGTGTTTTAATATTTGGAATATTTATCT
TGAACTAAACATTTTGCTCATAAGGCGTACGTGTGTGACCAGCAGCAGGC
GCAGTGGAAAGTTGGAGTTGACAGTATGTTGGCGGGAGAGAGATGGATAT
GCTGTTGTGCCTATCTTCTCGCTTAGTAGGAATGCTCTTGTTTTCAAACA
CCACCGATGTCGAACGGAGTGTATGTAATTTTCCACTTGGTCGTGGAGGG
AAAGGGTCGATCGGATTTTGTGCGGGCGAAACAGTATTTGGTGGGTCCTC
CCGACGCCTCAAGCGCAGAAGAAGACCAAATAATGCCCTCATGTAATTTG
CTATTGTGTTTGGTATTCGATCTTTTTTTCTTTTTGTTTCCCCAACATGT
ATTGAATCGCCCTTTTAATGTCTTCGTCTTGGGGAGCTTAATTTTCGTGA
CATGAGACCTGCTAACTTGTGTGGTGTTGTTCTGCTACTGTACAAGTTTG
TCTCATATTGGGTAGCTCCATATGTTGCTTCATCCATTGCTAATTTTTTA
TACATGTCACGCTGTATTGAACCCTTGTCGTGAAGCACACACGTGGAATA
CACGTCACCCCCTCCTATTGGTCATAATCTAATTGTGCTGATAAGTGTAC
TGTAAACGAGTAGAATTTTGAAGTCAGCCCCATAACGTCAAGATGGGCAC
AGGGGGACCCATTATGTGAGAGCTTAAGAGCTTTGGTTCAACCGACTAGG
ACAGGGTTTAACTTGAGAATTTTGTTTTTTAGGGTTATATATATATATGT
TTGCTGTTCATGTGGAAACTGTTTCATGATATACCTACAGTACAGTAACA
CATGCGAGTGATACAATGATACTTCCTTATGAAGGTTGCCGTGGCTCATG
TCGTGCGTGGTCGAAGAGGTGCCTGAAGTACTGGTATTTGCTCATGACGG
GGTCAGAGTTTAATATAGGGAACAGGATCCTTTCGGTGTACCACGCAGTA
TACTGCCCAAATATCCGTCAAGTCTAGTTGAAATTCAATTCGTCTGGTGG
GCATGCGTGCTTTGTTGTGGATGAGCTGTAGCAGTGGCGATGGGGGAGTA
AGCACTTGTTCATGTACAGGTCTCAGCGTAGTGTACTCCAAGGTCGCACA
ATGGAAGGTGAGCTAGGCCCTAGGCTATGGGCTGGCACTCCAAAACATGA
CTTCACTATGCATGTAGGAGGGCTACACAATGAATGTTTCTCTATCCTCT
ATTTGCTGTCCTATGTGTCATCACATGCTTTGATGGTTGTCCCGCAATTG
AAGTATTTCGGCTGTACCTGTTGGTCGTAAGAAATACTATACATTAAGGC
TAAAACGAGTATCTGCATATTTTACATGAAAATATGAAAAGCCTGAGGCA
TAAGATATGCTCCTCCAGGTTATACATGGACACTTATTTAGATTGCCCGC
ACGTTGTGAGGTTATATGTATTTGTGTGTAGAAATGAAGATACGTCCATT
AGTCCCCTTGGTCATGATCTAGTGTTGCTAAAAAGTTTTTTTTTTTTTTT
TAACTCCCGGAAGGCTAAGGCAAAAACCTCTATCCGACGCTTCCTACTAA
TAAGGGTATTGAAACCAACTGAATTTTGAAGTTGGTCGAGTAATTATATG
AGCTTTAGCTCCACCCGCAACCCCACGACCGAATAAAATTTTAACATTGG
AAAAAATCAAAAGAGATAATTGTCAAAGGCAGTTTCATCTGTGAAATACC
TGAACAATATATAGTAAAATCGAAAGTGACGATATAAGCTTCCGACTTTA
CAAAAGAAGAAATGGTACGATATCCCTCTCTTGTGGTGGTAACGTACTTG
TTATATCAAAGAAATCAAAATAGTGTAACACCATTCGATTAACGTCTATC
TGATGAGCAGGATAATCTCTCAATATGGCGATATATATATGTATATATAT
ATATATATATTGATATTTTGAGATATAATCTTGACTATGACCCATCACAG
TTGGAGGGAAAACTGCGGAAGGCCTTGTCAGAGGTGGAGGCAAGGGAGCG
AGGGCTCAAAACTCGGGAAGAAGCCTGGAGGACAGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig13577:2475..5562+

>mRNA_H-paniculata_contig13577.2208.1 ID=mRNA_H-paniculata_contig13577.2208.1|Name=mRNA_H-paniculata_contig13577.2208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig13577:2475..5562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGTGGCGGGTCGGAGAAGAGACGGCGTTTGCCACACGTCTCAGAGAGA
AGACAGTGGCGGGTCGGAGAAGAGACGGCGTTTGCCACACGTCTCAGAGA
GAAGGACCAGGCCTTGGAAGAGAAGTGGGCCGTGAGGGAGACTGCCCGAC
GGAGGGATATGACACAAGCGCAGCAGGAGTATGGAAAGGACCAGGCCTTG
GAAGAGAAGTGGGCCGTGAGGGAGACTGCCCGACGGAGGGATATGACACA
AGCGCAGCAGGAGTATGGAAAGTTGGAGGGAAAACTGCGGAAGGCCTTGT
CAGAGGTGGAGGCAAGGGAGCGAGGGCTCAAAACTCGGGAAGAAGCCTGG
AGGACAGATTGGAGGGAAAACTGCGGAAGGCCTTGTCAGAGGTGGAGGCA
AGGGAGCGAGGGCTCAAAACTCGGGAAGAAGCCTGGAGGACAGA
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