mRNA_H-paniculata_contig13571.2206.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13571.2206.1
Unique NamemRNA_H-paniculata_contig13571.2206.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13571.2206.1 vs. uniprot
Match: A0A6H5JYC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC0_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.270e-43
Identity = 96/202 (47.52%), Postives = 114/202 (56.44%), Query Frame = 3 
Query:  831 LEGARGVEVAARLYRVLDAGGDGRLDFQEFSSGACLLKGSPEEDKLQLLFKMYSDTGKAGVVGRDGLRAFILDMIAASPPPIAPPGCKSHRGVSLNGRKISPPIAGIEGGSLASNGDMEGVHSGVMLEGARWGGVEDQGVTDFELELKDVLDRMTGVVLAEHDSDGDGMLSEKEWKAYLQREEDGVGAFLETLSDSVGQLLL 1436
            L G RG EVA RLY VLDA GDGRL F+EF+S ACLLKGSP + KL+LLF+MY D  + G+VGR+GL+A ILD+IAASP                                                              DFE EL  +L +M  VVL EHD+D DG+L+EKEWKAYL++EED V AFL+TLSDSVG LLL
Sbjct:   87 LPGPRGAEVAKRLYGVLDANGDGRLSFEEFASAACLLKGSPHQTKLELLFRMYGDASRGGLVGREGLKALILDVIAASP-------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDFEKELGGILAKMADVVLTEHDADNDGLLTEKEWKAYLKQEEDSVIAFLDTLSDSVGNLLL 269
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BLAST of mRNA_H-paniculata_contig13571.2206.1 vs. uniprot
Match: D7FPF0_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.220e-12
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 3 
Query: 1290 MTGVVLAEHDSDGDGMLSEKEWKAYLQREEDGVGAFLETLSDSVGQLLL 1436
            M  VVL E+D+D DG+L+EKEW+AYL++EED V AFL+TLSDSVG LLL
Sbjct:    1 MADVVLTEYDADNDGLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLL 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13571.2206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYC0_9PHAE2.270e-4347.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF0_ECTSI4.220e-1269.39EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13571contigH-paniculata_contig13571:2053..6691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1790
Cds size882
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.6373854-UTR-H-paniculata_contig13571:2052..26151622929073.6373854-UTR-H-paniculata_contig13571:2052..2615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13571 2053..2615 +
1691480721.533553-UTR-H-paniculata_contig13571:2052..26151691480721.533553-UTR-H-paniculata_contig13571:2052..2615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13571 2053..2615 +
1622929073.7301157-UTR-H-paniculata_contig13571:6346..66911622929073.7301157-UTR-H-paniculata_contig13571:6346..6691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13571 6347..6691 +
1691480721.5884829-UTR-H-paniculata_contig13571:6346..66911691480721.5884829-UTR-H-paniculata_contig13571:6346..6691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13571 6347..6691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.6536956-CDS-H-paniculata_contig13571:2615..29661622929073.6536956-CDS-H-paniculata_contig13571:2615..2966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 2616..2966 +
1691480721.542087-CDS-H-paniculata_contig13571:2615..29661691480721.542087-CDS-H-paniculata_contig13571:2615..2966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 2616..2966 +
1622929073.6715407-CDS-H-paniculata_contig13571:4120..41781622929073.6715407-CDS-H-paniculata_contig13571:4120..4178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 4121..4178 +
1691480721.5506446-CDS-H-paniculata_contig13571:4120..41781691480721.5506446-CDS-H-paniculata_contig13571:4120..4178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 4121..4178 +
1622929073.6853347-CDS-H-paniculata_contig13571:4530..48711622929073.6853347-CDS-H-paniculata_contig13571:4530..4871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 4531..4871 +
1691480721.5585985-CDS-H-paniculata_contig13571:4530..48711691480721.5585985-CDS-H-paniculata_contig13571:4530..4871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 4531..4871 +
1622929073.6997092-CDS-H-paniculata_contig13571:5283..53401622929073.6997092-CDS-H-paniculata_contig13571:5283..5340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 5284..5340 +
1691480721.5693173-CDS-H-paniculata_contig13571:5283..53401691480721.5693173-CDS-H-paniculata_contig13571:5283..5340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 5284..5340 +
1622929073.7200277-CDS-H-paniculata_contig13571:6271..63461622929073.7200277-CDS-H-paniculata_contig13571:6271..6346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 6272..6346 +
1691480721.578752-CDS-H-paniculata_contig13571:6271..63461691480721.578752-CDS-H-paniculata_contig13571:6271..6346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13571 6272..6346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13571.2206.1prot_H-paniculata_contig13571.2206.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13571 2616..6346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13571.2206.1

>prot_H-paniculata_contig13571.2206.1 ID=prot_H-paniculata_contig13571.2206.1|Name=mRNA_H-paniculata_contig13571.2206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=294bp
MGNTSTSLGGKDSTSATRQPRGGRVGEAGGLYDRALLRIRFEQLAKPLPS
TATVVASGEQSGDPSVTAVGTTIGSASAQKFVLFEDCSKLEGARGVEVAA
RLYRVLDAGGDGRLDFQEFSSGACLLKGSPEEDKLQLLFKMYSDTGKAGV
VGRDGLRAFILDMIAASPPPIAPPGCKSHRGVSLNGRKISPPIAGIEGGS
LASNGDMEGVHSGVMLEGARWGGVEDQGVTDFELELKDVLDRMTGVVLAE
HDSDGDGMLSEKEWKAYLQREEDGVGAFLETLSDSVGQLLLLQ*
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mRNA from alignment at H-paniculata_contig13571:2053..6691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13571.2206.1 ID=mRNA_H-paniculata_contig13571.2206.1|Name=mRNA_H-paniculata_contig13571.2206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4639bp|location=Sequence derived from alignment at H-paniculata_contig13571:2053..6691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCGAAGCTGTTCCTGTAAGTTGAACCCTTTCTGGTGAACGGCTGTGT
CTATGTGTGTCTGAGTGTACATGTGTATTACGGGAACCTCTCCGTGCGCC
ACTCTTACAGGTGTAATCGGTGCTAAACAAGAGCATATATTCGCCACATA
CGGCGAAAATCTGGAGAGGAGCGTGCTCGGTTCTAACGGCCTGTCCGAGG
TTCGTGTAGATCGCTGATAAACTCCACTTTGCAGAACAGGCAGGTCCTTG
CTGGTGAATGTACTGCTAGCCATTGACTGTGCTCGTACACTGTACCGTAC
TGTCTAAATTTAATGCGCCCAGCTGCAGACGTAGCCTAGAGCCTTGAGGA
CAGTGAGCGACTCCTGCGATCGCTTCCAGCATACCTTGCGCAACGCGGAG
TATTGCACCAAACGTGACGCTGGATAGCGCTGAAAAGGGGAACGGCAAGC
CTAGGTAGGGTTACAGCAGACTCACCACCAACAGACAAGTTTAGCAACAT
AGCAGAGGGCACCCAGTATCCTACGTTTGGCCGTATCGAATATACAGATA
TAACCAAAACATCATGGGAAACACAAGCACATCCTTGGGCGGCAAGGACT
CCACATCGGCCACTAGGCAACCGCGAGGTGGTAGAGTCGGGGAGGCTGGC
GGCCTTTACGACCGGGCACTATTGCGTATCCGATTCGAGCAGCTGGCGAA
GCCCCTCCCTAGCACGGCCACTGTCGTCGCCAGCGGTGAACAAAGCGGTG
ACCCTTCCGTCACTGCTGTGGGTACTACCATTGGTTCTGCGAGTGCCCAG
AAGTTCGTGCTTTTTGAAGACTGCTCGAAGCTTGAGGGTGCAAGGGGCGT
GGAGGTGGCTGCCCGTCTATACCGAGTGCTAGACGCTGGTGGGGACGGTC
GACTAGACTTTCAGGTGTAAAAGATGTTTTGGTAGACCCCATCCATGGTC
GATGCTTCGGCACCATCTCTTGGATACTAAAAACTTCAACACTCTATTTT
CGATCTTCGAAGCAAGACATGTTCTCGCAGGGTAATTATCCGCAGAAGAG
ACAGCTCTGGCGTAATCGTCTTCTGTCGCTGGCTCAGGGGATTCCTTGGA
AACACGTCATTTTTGCACCGATTTGTCAACATTATTTTGCCCTTTTTTTC
AGCCTGATTCCATGGCGAGTTATCTACCCTCAGGTTGGTGGGACTATTGA
GTCTGGGGGGCTCTCTAAGCTTGTAGCATGTTGCTATGGCACAGCTGTGG
CCACTATACATACGCCACACGCAAAAGCCGCCAAACGCCACAGGCCATGG
GTAGACACAGATGTATATATTATCTTGCATGATGACAGCTATATCGTAAT
ATATAGCCGACAATTCCAACGGTCGATGTATCGGGGGCCCTCAACGATAC
GACACGACATTATACCGTATATAGCGGTGTATCGGATGCTATCAGTACCG
ACGCACAACCCAGATGATTTTAGTAGTGTGCCCATTATGTCACGACCGCA
TTGTCATCTTCGGTGGCGGACCCTCTCTTACGTGGCTCTTATCTAGCTTG
ACTCTGTGTTGTATGGGAGTCGTATTCATCATAAGAAGAAGCTGTGCGAG
ATGTTGCTGCTGGGTTCCTCTGAACTCCAAGGATGTTGGTGTATGATATC
GGTTGAGCTCTTGTACGTGCGTTCGCGCGTTGACCACCTCTCTTGTCTCG
ATCTCCTTAAGACTGTTTTGTATCGTTTCCACATCCTCCAACTGTACAAA
CTATCGATGATACGGCGGTAACGGTCACAGCGTGGTGGCCGCAACGTGCG
GGAGGTGCGCGGCTAGGGACACTGTAGAAATGGACACTGACGCTTCACGG
TGCATTCAGTAGGTCTAATTCTAATATAGGTTTTCGCTTCACCTCGAGAT
TAGAGCAGCCCTGCGTGCTGGTGCTACAAGCTCAACCAAAGACATCGCCT
CACTTGGTTCTGTGGTTGTGAACCGCATTTTCGTTTTTACTTTCCCGCCC
ACCCCCCCCTCCGCCACCTCGCTCTGCACATCGTCTCTTTTTCCTCTCGT
GTTGTGTGCGACACTAAGGAGTTTTCGAGTGGGGCGTGCTTGTTGAAGGG
TTCTCCCGAAGAAGATAAATTGCAATGTAAGCACGTTGGACGACTTCAGT
TTGTCTGGGTACACCAATCATATGTTTTTTAATAACGCATGAAACAAAAA
CAGACAATACACACAACTGTATCTGCAAAACGGAACGCTCCAGAAAGATC
GCTGCCATCGGTCAACTGTATGTTTGCATTAGTCAAGCTATCGATAGCAC
AGCATCACCCTAATGTATTCAAGTTATTCCGCCCTGATATGATCGTGCCC
ATTAAAACACCGCTACTCCCGGCTCCAAACCAGAGCAAAGTCAAACCTCT
AACCCCATTCCCCCCTTGCGATGGCCGACATGCATTTACATATATATAAA
TACATCTGCCTGCCTACTCTGCCAGCAGTGCTCTTCAAAATGTACAGCGA
CACAGGCAAAGCGGGTGTTGTTGGCCGAGACGGACTCCGAGCCTTTATCC
TAGACATGATAGCGGCGTCCCCGCCGCCGATAGCTCCGCCAGGATGCAAA
AGCCACCGAGGAGTATCATTGAACGGTAGAAAAATTAGCCCACCAATAGC
AGGGATAGAAGGGGGGAGTCTCGCGTCGAATGGGGATATGGAGGGTGTGC
ATTCGGGAGTGATGTTAGAAGGCGCGCGGTGGGGTGGCGTGGAGGACCAG
GGTGTCACAGACTTCGAGTTGGAACTGAAAGATGTGCTGGATCGGATGAC
GGGAGTGGTGCTGGCTGAGGTGGGTGGCTGGGTGGATGGGTCGGTGGGTG
GACCGAGTGACGACTCCATTGAGGTACTTGGTGATGCATAGAAGTATGCC
AAGTTTGTGATTTCGGAGTTTTCTGGTGGGAAATGTTCCTCTTAGTCAAA
GTGAAATTATGTGGCGGAAGGGGGGCGGGGGGCGGGGGACGCTGGCACTG
ATTTTCGAACAAGGCTTGAGAATTTTTTCGTTCGGGTTGTCCTATCGTGT
GCTTTAGTTGTCATATCATGTACTTCAGTTGCAAAATTGTAGCCCCCACT
CCCCTAGGATGACACTTTGTTTCCGCCGAAACTCCTTAACTTGTAACGCG
AACACATGATAAGAAATCTCTCCAAGTCTTCACCATGATCATAGGGCCCC
ACTTATTTGTGTTTCGGTATTACCACCACAGCACGACTCAGACGGTGATG
GAATGCTGTCGGAAAAGGAATGGAAGGCCTACCTTCAGGTGCGTACAACC
GAGTCACGATTATCCATACAGATCTCGACGCAATAACACAGGTTGTGGGT
GGGTGTGATGTCGGGAGTGAAGTTGTGAAAGATATGGCACACCATGAAAA
TTTTGATAGTATCCATTCCCGTGGTGCTGTTTCTCAGGTTATCTCTCACG
ATATCATTAACCCGTAGGGGATGCAGGAACCGATTCGACTCGCCCCGCCA
GGTGTTCCACGCATTTCCACATTACCTGACCTTAGCTTGTGTTGATTGGG
TGACCTTCCGAGTTATCTCAGAAGGATTCCGAAGGAGATAAACTTGCATG
ATTCCCACTATTTTGGTGCCGCCACCATTTTCGCGATGCCTTATTTTTGT
CTTTTTTGCAACGCTTTGGTTATTCATCGGTTAGAGATTTGCACCCGCGA
CCCTCTGGACGAATGACGGACAGGGATTCTCACACAGTTGTCGTTAAATT
CGAGAAGAGATATAGACGAATGGACGTTCCAAGACATGTCAAGATATATA
TGTATTATCCTTGAAGGAGAGGAGAAACCTTTGCCCAACACTTACCCCGA
GATCGAGTTCGTGTGTCGGTTACCCGAAGGCCCGACTAGACCGCCGCGCG
GCAATCATGTGAGGTAGGTACTCCGAGCGTTCGTATGACTTTGCTCAGGG
TTTGGGACTTTCGCCCACTGAAACCCCATATATCGATTCCCTCAACTTGG
TGCAGTACACGCACCGTCCTGCCAATATTTAGATGTGCCTAAAACAGCAC
AAATATTGAACCACAAAAACGACAGGGCTCCTTGTGTTCGTTTCGAATGG
TTTGTTATTGCCTTCACTGAACTGGAAAATAACGAAAAATGTACTGGAGA
ATAACTGACTGCGCCGATTGCCCCGTCGCTCTCCTTCCCCGCCGGCACGG
TACTACTGGACGAATGCAGCGGGAGGAGGATGGCGTGGGCGCGTTCTTGG
AAACCCTAAGCGACAGTGTCGGGCAGCTCCTTTTGCTGCAGTGAAGATGA
CGGAAAAAAACATGACCTCGACCAAGCTCCTCTCGTGTTTTGGACCGCGC
CTGAGAGGCGTTGGTATAGATGTCCCACCCCACGCCGGCATGCCCCCCAT
ACGGATCAAACGCCGGATTTTCCTTGTTCCGTTTCGTGGTGCCTTTGCCA
CCGACATTGAGGAGGAGAGGATTAATTTACGATTTATCGATGTAATGTAG
CACGCAGACATAAGCTTGGGGATTATGGTCCTTGTTGGGCGGGTCAGAGG
CGAGGTGTGTGGTGGTCAATATAGGCCAATTTAACGAAACGTTTTTTTCA
ACGCACGAGCGGGCCTCGGCAAGACAGACTAGAAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13571:2053..6691+

>mRNA_H-paniculata_contig13571.2206.1 ID=mRNA_H-paniculata_contig13571.2206.1|Name=mRNA_H-paniculata_contig13571.2206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at H-paniculata_contig13571:2053..6691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAACACAAGCACATCCTTGGGCGGCAAGGACTCCACATCGGCCAC
TAGGCAACCGCGAGGTGGTAGAGTCGGGGAGGCTGGCGGCCTTTACGACC
GGGCACTATTGCGTATCCGATTCGAGCAGCTGGCGAAGCCCCTCCCTAGC
ACGGCCACTGTCGTCGCCAGCGGTGAACAAAGCGGTGACCCTTCCGTCAC
TGCTGTGGGTACTACCATTGGTTCTGCGAGTGCCCAGAAGTTCGTGCTTT
TTGAAGACTGCTCGAAGCTTGAGGGTGCAAGGGGCGTGGAGGTGGCTGCC
CGTCTATACCGAGTGCTAGACGCTGGTGGGGACGGTCGACTAGACTTTCA
GATGGGAAACACAAGCACATCCTTGGGCGGCAAGGACTCCACATCGGCCA
CTAGGCAACCGCGAGGTGGTAGAGTCGGGGAGGCTGGCGGCCTTTACGAC
CGGGCACTATTGCGTATCCGATTCGAGCAGCTGGCGAAGCCCCTCCCTAG
CACGGCCACTGTCGTCGCCAGCGGTGAACAAAGCGGTGACCCTTCCGTCA
CTGCTGTGGGTACTACCATTGGTTCTGCGAGTGCCCAGAAGTTCGTGCTT
TTTGAAGACTGCTCGAAGCTTGAGGGTGCAAGGGGCGTGGAGGTGGCTGC
CCGTCTATACCGAGTGCTAGACGCTGGTGGGGACGGTCGACTAGACTTTC
AGGAGTTTTCGAGTGGGGCGTGCTTGTTGAAGGGTTCTCCCGAAGAAGAT
AAATTGCAATGAGTTTTCGAGTGGGGCGTGCTTGTTGAAGGGTTCTCCCG
AAGAAGATAAATTGCAATTGCTCTTCAAAATGTACAGCGACACAGGCAAA
GCGGGTGTTGTTGGCCGAGACGGACTCCGAGCCTTTATCCTAGACATGAT
AGCGGCGTCCCCGCCGCCGATAGCTCCGCCAGGATGCAAAAGCCACCGAG
GAGTATCATTGAACGGTAGAAAAATTAGCCCACCAATAGCAGGGATAGAA
GGGGGGAGTCTCGCGTCGAATGGGGATATGGAGGGTGTGCATTCGGGAGT
GATGTTAGAAGGCGCGCGGTGGGGTGGCGTGGAGGACCAGGGTGTCACAG
ACTTCGAGTTGGAACTGAAAGATGTGCTGGATCGGATGACGGGAGTGGTG
CTGGCTGAGTGCTCTTCAAAATGTACAGCGACACAGGCAAAGCGGGTGTT
GTTGGCCGAGACGGACTCCGAGCCTTTATCCTAGACATGATAGCGGCGTC
CCCGCCGCCGATAGCTCCGCCAGGATGCAAAAGCCACCGAGGAGTATCAT
TGAACGGTAGAAAAATTAGCCCACCAATAGCAGGGATAGAAGGGGGGAGT
CTCGCGTCGAATGGGGATATGGAGGGTGTGCATTCGGGAGTGATGTTAGA
AGGCGCGCGGTGGGGTGGCGTGGAGGACCAGGGTGTCACAGACTTCGAGT
TGGAACTGAAAGATGTGCTGGATCGGATGACGGGAGTGGTGCTGGCTGAG
CACGACTCAGACGGTGATGGAATGCTGTCGGAAAAGGAATGGAAGGCCTA
CCTTCAGCACGACTCAGACGGTGATGGAATGCTGTCGGAAAAGGAATGGA
AGGCCTACCTTCAGCGGGAGGAGGATGGCGTGGGCGCGTTCTTGGAAACC
CTAAGCGACAGTGTCGGGCAGCTCCTTTTGCTGCAGTGACGGGAGGAGGA
TGGCGTGGGCGCGTTCTTGGAAACCCTAAGCGACAGTGTCGGGCAGCTCC
TTTTGCTGCAGTGA
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