mRNA_H-paniculata_contig1357.2204.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1357.2204.1
Unique NamemRNA_H-paniculata_contig1357.2204.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 2.060e-83
Identity = 171/309 (55.34%), Postives = 207/309 (66.99%), Query Frame = 2
Query:   62 IVPPYTLETYQFDNLGVKVCKVVCGREHSLAVSEAGRLYTFGPYEGGRLGLLAVAGQRGVSAPRIVRSS-LAHERVVNAAGGDLHSACVCESGKVFTWGHGNTGALGHGTTNDETMPRLVPHFGPEATAEGSNINIAERDGHLDHRNASQRRLAVGVACGAWHTLVVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPHEVLLGSKRISLSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWGKCDASSDVDPVSDKSYLLPRRVTTTAGKPYPVYSTVAQGGFLTMGVADRVNIDP 985
            ++ P  +E  +FDNLGV++ +V CGREHSLAVS+AGRLY FGP +GGRLG  AV G  GVSAPRIVR+  LA ERVV AAGG +HS+CVC SGKVFTWGHG+TGALGHG   DE  PR+V  FG +        +  +  G  D  +A    LA  VACGAWHTLV+T  G+V+AFGDGFTGQLGL  RG  + S+AL P  V +  +R +     +  +         V + +VACGSFSSA VS+EG LY WGK DA SD DPV+DK YLLPRRVT+  G   P Y  VAQG  LT+G+A+ V  DP
Sbjct: 1688 VLSPRRVE--EFDNLGVRITRVSCGREHSLAVSDAGRLYAFGPSDGGRLGFKAVVGTGGVSAPRIVRAPCLAEERVVAAAGGQMHSSCVCASGKVFTWGHGSTGALGHGVAEDEPTPRMVSGFGRDEAR-----SAPQGAGEQDDPDADI--LATSVACGAWHTLVLTKAGKVHAFGDGFTGQLGLEDRGGEKESRALSPRVVRI--ERNAGGGGGSPGD---------VYVTEVACGSFSSAVVSSEGNLYHWGKPDAFSDDDPVADKRYLLPRRVTSGRGGAAPAYRLVAQGASLTLGIAEGVRTDP 1976          
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: A0A6H5L3G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G6_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 6.900e-70
Identity = 137/260 (52.69%), Postives = 166/260 (63.85%), Query Frame = 2
Query:  209 GLLAVAGQRGVSAPRIVRSS-LAHERVVNAAGGDLHSACVCESGKVFTWGHGNTGALGHGTTNDETMPRLVPHFGPEATAEGSNINIAERDGHLDHRNASQRRLAVGVACGAWHTLVVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPHEVLLGSKRISLSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWGKCDASSDVDPVSDKSYLLPRRVTTTAGKPYPVYSTVAQGGFLTMGVADRVNIDP 985
            G  AV G  GVSAPRIVR+  L+ ERVV AAGG +HS+CVC SGKVFTWGHG+TGALGHG   DE  PR+V  F       G +++ +   G  +        LA  VACGAWHTLV+T  G+VYAFGDGFTGQLGL  RG  + S+AL P  V +  +R +     +  +         V + +VACGSFSSA VS+EG LY WGK DA SD DPV+D+ YLLPRRVT+  G   P Y  VAQG  LT+G+A+ V  DP
Sbjct:   20 GFKAVVGAGGVSAPRIVRAPCLSEERVVAAAGGQMHSSCVCASGKVFTWGHGSTGALGHGVAEDEPTPRMVSGF-------GRDVDRSATQGTDEQDGPDADVLATSVACGAWHTLVLTKAGKVYAFGDGFTGQLGLEDRGGEKESRALSPRVVRI--ERNAGGGGGSPGD---------VYVTEVACGSFSSAVVSSEGNLYHWGKPDAFSDDDPVTDRRYLLPRRVTSGRGGAAPAYRLVAQGASLTLGIAEGVRTDP 261          
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: A0A5D6YAN1_9STRA (PH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAN1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 7.990e-23
Identity = 78/246 (31.71%), Postives = 125/246 (50.81%), Query Frame = 2
Query:  131 CGREHSLAVSEAGRLYTFGPYEGGRLGLLAVAGQRGVSAPRIVRSSLAHERVVNAAGGDLHSACVCESGKVFTWGHGNTGALGHGTTNDETMPRLVPHFGPEATAEGSNINIAERDGHLDHRNASQRRLAVGVACGAWHTLVVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPHEVLLGSKRISLSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWGKCDASSDVDPVSDKS 868
            CGREH+LA+++ G ++ FG   GGRLG+ + A +       +  ++L   R+V    G+ HSA V +SG VFTWG GN+GALG G+ ++  +P              + ++ A +D   D   +  +     +ACG +HTLV T+ G++Y +GD   GQLG         +    P  ++L    I L+  RTT  +   P      I +V+ G+F+SA    +G L+ WG   A +     +D++
Sbjct: 1505 CGREHTLALTKQGEVFAFGAGFGGRLGIGSEADEE----YPVRVAALDGVRIVRIDAGECHSAAVNDSGDVFTWGFGNSGALGTGSRDNSLLP--------------TKVSGAWQD---DEDESGAQATVTALACGGYHTLVATSAGKLYGWGDSAAGQLG--------AALVAAPDMIVLAPHEIPLAGVRTTPSSGSPPP----TIREVSAGTFTSAVCLDDGRLFVWGSTAAGNGAPLQADEA 1717          
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: A0A2R5GRJ8_9STRA (Bifunctional serine/threonine-protein kinase/NEDD4-like E3 ubiquitin-protein ligase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRJ8_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.760e-20
Identity = 73/238 (30.67%), Postives = 113/238 (47.48%), Query Frame = 2
Query:  110 VKVCKVVCGREHSLAVSEAGRLYTFGPYEGGRLGLLAVAGQRGVSAPRIVRSSLAHERVVNAAGGDLHSACVCESGKVFTWGHGNTGALGHGTTNDETMPRLVPHFGPEATAEGSNINIAERDGHLDHRNASQRRLAVGVACGAWHTLVVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPHEVLLGSKRISLSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWG 823
            V++  V CGREH+L +S +G +++ G    GRLGL      R +  P  ++ +L  E+VV  + GD HS  V   G V++WG G +GALGHG T +   P+ V                               R  + V CGA+H++ +   GRV+ +GDG  GQLG+   G++  S +    +   G+  I     R    A + P    ++  Q+ACG+ +  A+  E  L+ WG
Sbjct: 1390 VEIVSVSCGREHTLLLSRSGMVFSCGVATCGRLGLGDAGRDRLI--PTRIKGNLEDEQVVAVSAGDAHSLAVTSDGVVYSWGFGESGALGHGDTQNRLDPKRVALL-------------------------QDMRRVIQVGCGAYHSVALDDQGRVWTWGDGINGQLGIEQDGAMGNSSS----DDETGASTIP----RMVRFARVAPSGANIK--QIACGTNTVWALDAENKLFHWG 1590          
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: A0A7S1CDT0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDT0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.760e-19
Identity = 94/316 (29.75%), Postives = 137/316 (43.35%), Query Frame = 2
Query:  116 VCKVVCGREHSLAVSEAGRLYTFGPYEGGRLGLLAVAGQRGVSAPRIVRSSLAHERVVNAAGGDLHSACVCESGKVFTWGHGNTGALGHGTTNDETMPRLVP--------------HFGPEATAEGSNINIA-ERDGHLDHR-----------NASQRRLAVGVACGAWHTLVVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPHEVLLGSKRISLSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWGKCDASS-DVDPVSDKSYLLPRRVTTTAGKPYPVYSTVAQGGFLTMGVADRVNID 982
            V +VVCG  H+ A+++ GRL+T+G  + GRLGL           PR V  S     +   A G LH+A +   G+V TWG G +G LGHG   D+ +P LV               H     + +G       + DG L H             A   R  V +ACG WH+  +T+ G  + +G   +GQLG   + S  T     P  VL G                     +   I  +ACG+  +AA++ +G ++ WGK D     V+  +D++Y  PR VT    +   V   V  G + T  VA  V++D
Sbjct:  296 VVQVVCGELHTAALTDDGRLFTWGLGKDGRLGLGTTESHH---VPRAVEFSRG-VAITQVACGGLHTAALTSDGQVLTWGLGASGRLGHGDELDQMVPTLVRSLAGTPMQQVLCGGHHSAALSGDGRVFTWGFDDDGRLGHGVPGHQFVPKLVEALLMRTVVQIACGCWHSAALTSDGAAWTWGSCKSGQLGTAAKNSSAT-----PRVVLQG---------------------KGGGIVSIACGTAHTAALARDGTVFTWGKHDDGRLGVESTADQTY--PRAVTNLVERGLAVQQVVC-GVYDTAVVA--VSVD 576          
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: A0A2R7WNR5_ONCFA (MIB/HERC2 domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WNR5_ONCFA)

HSP 1 Score: 105 bits (261), Expect = 3.640e-19
Identity = 93/283 (32.86%), Postives = 133/283 (47.00%), Query Frame = 2
Query:   71 PYTLETYQFDNLGVKVCKVVCGRE--HSLAVSEAGRLYTFGPYEGGRLGLLAVAGQRGVSAPRIVRSSLAHERVVNAAGGDLHSACVCESGKVFTWGHGNTGALGHGTTNDETMPRLVPHFGPEATAEGSNINIAERDGHLDHRNASQRRLAVGVACGAW--HTLVVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPHEVLLGSKRISLSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWGKCDASSDVDPVSDKSYLLPRRVTTTAGK 907
            P  +E +     G ++  + C  +  H +A+S  G +YT+G  +GGRLG          + P +V++ LA  RVV  + G  +SA V E G++FTWG GN G LGHG++ D ++P LV      +  +G NI                    V VACG+    TL VT  G VY++GDG  G+LG   RG  + S+  LP                      LV   + V I +V CG+  S A+ST G LY WGK D +  +   SD+    P+ +    GK
Sbjct:  319 PEKIEAFN----GKEILDISCRADGKHFMALSSEGEVYTWGMGDGGRLGH---GDTNSRTEPHLVQA-LASHRVVRISCGSSYSAAVSEKGELFTWGRGNYGRLGHGSSEDVSIPTLV------SALKGQNI--------------------VDVACGSGDAQTLAVTETGLVYSWGDGDYGKLG---RGGSDGSK--LPK---------------------LVERLQGVHIVRVYCGNQFSLALSTAGELYSWGKGD-NFRLGHSSDEHVRFPKLIMGLKGK 540          
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: A0A7S2BIE0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BIE0_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 7.270e-19
Identity = 94/310 (30.32%), Postives = 139/310 (44.84%), Query Frame = 2
Query:  104 LGVKVCKVVCGREHSLAVSEAGRLYTFGPYEGGRLGLLAVAGQRGVSAPRIVRSSLAHERVVNAAGGDLHSACV-CESGKVFTWGHGNTGALGHGTTNDETMPRLVPHF----------GPEATAEGSNINIAERDGHLDHRNASQRRLA----------------VGVACGAWHTLVVTAGGRVYAFGDGFTGQLGLPHRGS--LETSQALLPHEVLLGSKR-----------ISLSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWGKCD---ASSDVDPVSDKSYLLPRRVTTTAG 904
            L  K   V CG +H+LA++ AG +Y++G   GGRLG       RG+  P++V   L  +  +  A G+ HS  V  E G+ +TWG G+ G LGHG T  + +PR + +F          G   +A  S+  I    G   +    Q                    V VACG +HTL +T  G +Y+FG    G+LGL  +    ++T Q   P  +   + R           +  S + TTA   LV   R  +I+ +  G+F SAA+S +G +Y WG         D+    +K  + PRRV    G
Sbjct:  182 LSKKCISVACGSKHTLALTAAGGVYSWGYGGGGRLGC---GDTRGLFRPKLVEL-LKDQPCLLIAAGESHSMAVTAERGQCYTWGVGDYGKLGHGDTTPQPLPRHLEYFRQHTLTWVSGGTFHSAGCSHQGILYTWGGGTYGKLGQMATINSLTPRPVKSVTDAHFVQVACGTFHTLALTNSGDMYSFGFNGNGRLGLADKSGSGMDTKQRTTPELIKSYASRGAKDTEDIGLPVDDSQAATTA---LVKALRPKKISHLCLGAFYSAALSDQGDVYTWGDGRHGVTGLDLSRQEEKEVVKPRRVLGLGG 484          
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: A0A7S4IFA4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IFA4_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 4.680e-18
Identity = 84/298 (28.19%), Postives = 131/298 (43.96%), Query Frame = 2
Query:  107 GVKVCKVVCGREHSLAVSEAGRLYTFGPYEGGRLGLLAVAGQRGVS--APRIVRSSLAHERVVNAAGGDLHSACVCESGKVFTWGHGNTGALGHGTTNDETMPRLVPHFGPEATAE----------------------GSNINIAERDGHLDHRNASQRRLAVGV-------ACGAWHTLVVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPHEVLLGSKRISLSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWGKCDASSDVDPVSDKSYLLPRRVTTTAGK 907
            G+ + +V CG  H+ A+++ G+LYT+G  + GRLG     G   ++  +P++V      +RV+    G + SA + E   V+TWG    G LGHG T +   P LV        ++                      GSN  +    GH D  N    +L  G+       ACG +HT V+T  G +Y +G+G  GQLG  H  ++      LP +  L  K                      ++ Q+ACG+  +AA++  G L+ WG C  +  +    +K+   PR V + AGK
Sbjct:  243 GIIITQVACGDFHTGAITDTGKLYTWGKGDDGRLG----HGDMSLAYLSPKLVEF-FDGQRVIFLDCGYVTSAAITEDNSVYTWGGNEKGQLGHGDTENRLSPTLVQSLNGRNISQIACATWHTAAISSGGHVYTWGNGSNGKL----GHSDEENQDFPKLVDGINGKVTQIACGDFHTAVLTEEGIIYTWGEGNYGQLG--HGSAISQHNKPLPIQKPLEGK----------------------KMVQIACGANHTAALTDNGQLFTWG-CAVNGRLGHGDEKNLWSPRVVVSMAGK 506          
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: A0A8K1CK85_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK85_PYTOL)

HSP 1 Score: 100 bits (250), Expect = 6.750e-18
Identity = 91/302 (30.13%), Postives = 126/302 (41.72%), Query Frame = 2
Query:  116 VCKVVCGREHSLAVSEAGRLYTFGPYEGGRLGLLAVAGQRG-------VSAPRIVRSSL-------------------------------------------AHERVVNAAGGDLHSACVCESGKVFTWGHGNTGALGHGTTNDETMPRLVPHFGPEATAEGSNINIAERDGHLDHRNASQRRLAVGVACGAWHTLVVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPHEVLLGSKRISLSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWGKCDASS--DVDPVSDK 865
            V +V CGREH+L V + G +Y FG  E GRLG     G+ G       V A R +++                                             + E VV    G+ HS  V + GK+FTWG G++GALG G+  +E +P+ +   GP    +G  +  A                    ACG++HTL  T  GR+Y +GD   GQLG     S E    L PHE+ L    +         E  L+ +  R     +ACG+F SAA ST+G L+ WG   A +   +DP   K
Sbjct: 1255 VAQVSCGREHTLTVLQNGDVYGFGWAEAGRLG----TGESGSVFLPTKVEALRDIQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEIVVAIDAGECHSCAVTQDGKMFTWGFGSSGALGTGSRENELVPKKIE--GPWKDNDGEWVTSA--------------------ACGSYHTLARTNQGRLYGWGDAAAGQLGEELLKS-EDMVVLTPHEIELAVANVG--------EVELISQEVR----DIACGTFMSAACSTDGQLFVWGSAAAGNGAQLDPEDAK 1517          
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Match: A0A0M0K9T2_9EUKA (Rcc1 repeat-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K9T2_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 8.390e-18
Identity = 84/287 (29.27%), Postives = 132/287 (45.99%), Query Frame = 2
Query:  104 LGVKVCKVVCGREHSLAVSEAGRLYTFGPYEGGRLGLLAVAGQRGVSAPRIVRSSLAHERVVNAAGGDLHS-ACVCESGKVFTWGHGNTGALGHGTTNDETMPRLVPHFGPEATAEGSNINIAERDGHLDHRNASQRRLAVGVACGAWHTLVVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPH----EVLLGSKRIS--LSNSRTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWG--KCDASS-DVDPVSDKSYLLPRRVTTTAGKPYPVYSTVA 934
            LG     V CG +H++A++ AG +YT+G   GGRLG       RG+  P++V + L  +  +  A G+ HS A   E  + +TWG G+ G LGHG T  + +PR + +F         N  +    G   H  A  +     V CG +HT+ +T  G ++ FG    G+LGL  +     S+ +  H    E ++  +  S    +S   A+A          I  +  G F S A+S +G +Y WG  +  A+  D+  + ++    P RV +  G   PV    A
Sbjct:  186 LGKACISVACGSKHTIALTAAGSVYTWGYGGGGRLGS---GDTRGMFRPKLV-NDLKDQACLMIAAGESHSMAITAEKAQCYTWGVGDYGKLGHGDTTPQLLPRHLEYF--------RNAQLIWCAGGTFHSAACAQP---DVECGTFHTIALTKNGDLFTFGYNGNGRLGLGAQNDPSKSRTVPAHIKNLEKVMSDRDDSGNFGSSGDAADAAYKKALTPKYIRYLCFGGFYSVALSDQGDVYTWGDGRYGATGHDLSRLDEREVSRPMRVLSLGGHRKPVIQLAA 457          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1357.2204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS90_ECTSI2.060e-8355.34eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L3G6_9PHAE6.900e-7052.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6YAN1_9STRA7.990e-2331.71PH domain-containing protein n=1 Tax=Pythium brass... [more]
A0A2R5GRJ8_9STRA9.760e-2030.67Bifunctional serine/threonine-protein kinase/NEDD4... [more]
A0A7S1CDT0_9STRA2.760e-1929.75Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2R7WNR5_ONCFA3.640e-1932.86MIB/HERC2 domain-containing protein n=1 Tax=Oncope... [more]
A0A7S2BIE0_9EUKA7.270e-1930.32Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S4IFA4_9EUKA4.680e-1828.19Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A8K1CK85_PYTOL6.750e-1830.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0M0K9T2_9EUKA8.390e-1829.27Rcc1 repeat-containing protein n=1 Tax=Chrysochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1357contigH-paniculata_contig1357:17276..23725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue4.4e-35
Seed eggNOG ortholog2880.D8LS90
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs2S0QB@2759,COG5184@1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2642
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1357.2204.1prot_H-paniculata_contig1357.2204.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1357 19350..22119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.404172-UTR-H-paniculata_contig1357:17275..176151622929073.404172-UTR-H-paniculata_contig1357:17275..17615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1357 17276..17615 +
1691480721.4825695-UTR-H-paniculata_contig1357:17275..176151691480721.4825695-UTR-H-paniculata_contig1357:17275..17615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1357 17276..17615 +
1622929073.5014684-UTR-H-paniculata_contig1357:19286..193491622929073.5014684-UTR-H-paniculata_contig1357:19286..19349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1357 19287..19349 +
1691480721.4955957-UTR-H-paniculata_contig1357:19286..193491691480721.4955957-UTR-H-paniculata_contig1357:19286..19349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1357 19287..19349 +
1622929073.5762603-UTR-H-paniculata_contig1357:22119..237251622929073.5762603-UTR-H-paniculata_contig1357:22119..23725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1357 22120..23725 +
1691480721.525533-UTR-H-paniculata_contig1357:22119..237251691480721.525533-UTR-H-paniculata_contig1357:22119..23725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1357 22120..23725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.5186126-CDS-H-paniculata_contig1357:19349..197061622929073.5186126-CDS-H-paniculata_contig1357:19349..19706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 19350..19706 +
1691480721.5031118-CDS-H-paniculata_contig1357:19349..197061691480721.5031118-CDS-H-paniculata_contig1357:19349..19706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 19350..19706 +
1622929073.5374143-CDS-H-paniculata_contig1357:20458..205801622929073.5374143-CDS-H-paniculata_contig1357:20458..20580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 20459..20580 +
1691480721.5105677-CDS-H-paniculata_contig1357:20458..205801691480721.5105677-CDS-H-paniculata_contig1357:20458..20580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 20459..20580 +
1622929073.5560455-CDS-H-paniculata_contig1357:21965..221191622929073.5560455-CDS-H-paniculata_contig1357:21965..22119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 21966..22119 +
1691480721.5180993-CDS-H-paniculata_contig1357:21965..221191691480721.5180993-CDS-H-paniculata_contig1357:21965..22119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 21966..22119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1357.2204.1

>prot_H-paniculata_contig1357.2204.1 ID=prot_H-paniculata_contig1357.2204.1|Name=mRNA_H-paniculata_contig1357.2204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MPRLVPHFGPEATAEGSNINIAERDGHLDHRNASQRRLAVGVACGAWHTL
VVTAGGRVYAFGDGFTGQLGLPHRGSLETSQALLPHEVLLGSKRISLSNS
RTTAEALLVPEHRRVRIAQVACGSFSSAAVSTEGVLYCWGKCDASSDVDP
VSDKSYLLPRRVTTTAGKPYPVYSTVAQGGFLTMGVADRVNIDPVPRTKV
HSYRKSRAFF*
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mRNA from alignment at H-paniculata_contig1357:17276..23725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1357.2204.1 ID=mRNA_H-paniculata_contig1357.2204.1|Name=mRNA_H-paniculata_contig1357.2204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6450bp|location=Sequence derived from alignment at H-paniculata_contig1357:17276..23725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAAGAAACGTGCATCCTATGCTGTACTTACCTATCTACACACTGACTG TGTAATAATACATCGTCCCTCCCTATACCTTGGAAACATATCAGTTCGAC AATCTGGGCGTGAAGGTATGCAAAGTAGTCTGTGGCCGCGAGCACTCCCT GGCGGTCTCCGAAGCCGGGCGACTGTACACATTCGGTCCTTACGAGGGCG GGCGATTGGGCCTCCTAGCCGTAGCAGGCCAGCGCGGCGTTTCCGCTCCT CGAATAGTGCGTTCCAGCCTTGCCCACGAGAGAGTGGTGAACGCGGCGGG GGGAGACTTGCACTCGGCATGCGTCTGCGAATCGGGAAAGGTTAGAATTA GGGTCAGGGTTAGGGTCAGGGTGGTATTTAGAGCGATGCAGGGGGGGGGG GCGAAGAGTTGCGACAGTTGTGTCTAACTCTTGGACAAAATATTAGAGAA TGATCGATAACATCGGACCTGAATAAGAAGGTTGATGCACATGATGATGA TGATGATGATGATGATGAACTTCGAACATATTTGGTGATGTGTCAATTTT AGAGGAGGCGTTTTTACGAGGTAGATAATGGACTGCATATATGCTGAGGA CGTTCATGGTCCAATCTATAATTGTGGCTGTGTGTGTTTGTATCTATCTA TCTATCTATGAATGCATGTACGTAATGTAACTATAATTATGACCACCGTT GGGTTTTTTTTTAATCCAAAAGGGGTGGGAGGAGACGGGAATTGATTATC CTTTCATCCATTGGTGATCACTCGCCCCCCTTTCTTAAGTTGTCGTGATA GGTAGATACGCAGTGACCAACCAATTCGTGTTTTAGTCTTGAAGAGGTTA AGTTTCCCATGTCGAATGGAAATGTCAGCGTCTGTTTTGACTGCCCCAAA CGATTCGAGGCAGTGAGGCAGGCCACCAGTTTTCGTGGCTTTTTGTAGAC ATTTTATTGTTCCTAAGCGGCCCAAACGGATTAGTGTTGGTAGGAAATTG GTCACATGTATGTATAGAAGACATGGTGTTTGTGCACTTGTTCACAGCTT CGGCGAAGGTTTAATTTTCAAGTAATTAACACGCAACGGAAGTGTCATCC CATCCCTTCATGCTCTAAAGTAGAAATATCTGTGGAGGTGCGCGATAGTA CTCAAAAGTCGAACACTCCTCGAACGTGTGCAGGATATCCATGCTATCGA TTTGTGGGTTTCGGAAGGCACCAGGTATCCTTGCTTTTGCCTCAGCCTTC CGAGGGTTGAAAAAAAAAGTAAGTATCCTCGTGCTCGCATAGTTTCAAAA CCCGCGACATCCTTCATCCGAGCTTTGCACTTGTTACAGCTCCCGAACTG CGAGGTTGGCATTCTTGCCAGCTTTTGCCAGTTTCGCCCAATTACACCTT TATTTCCCCGGAGATGAACAACGCTACCTGTACGTGATTTGCGAGTGAGA ATATAGTTTTGAGTGCTGACGTTTGATTTGCCAATCATATAGGTATGTAC GTGTGCGCACGTACGTCACGAAGTGATGGGATGGAATGAGATAGACTCGA ACAAAGGGGGACGGTGGGTTCGAACTGGAGGCTGTTCGCCGTGTCTATTA TGTACATAGGCTTATGTGAAGTAGTATGGAATGTGTCGTAGTAGCTCTGT TAAACTTTGTCGTCTGGCGAAAAAGGGGCATGACTGTAAAACGAGGCGTA TTAAGAGCAACTTGCAAAAAAAAAAAAAAAAATGTGGTCTTAACTCACTT TACTGTGTACGAAGCAGCATTGAATTATGGATTGCATTTTGAACAAAGAC ATTACATGTACGTGGTATTCCCGTTTTAAAAAAAGCATTCAGACAACGAT ACTCCATATTTTGCCATGCAATGATATGTTCTATTTATCAGATGTTCGAT TGAAGGGATGGTGATACTGCTATTTCCCTAAATCGCCACCGTAAATTGCT TTCCCTCTTTTCTTCTGTTTGTCTCTCCCCTTGATACACAACACACACAC ACAAACACAAGGTTTTCACTTGGGGTCACGGAAACACGGGAGCCCTGGGC CACGGCACCACCAACGATGAGACGATGCCGCGGCTCGTCCCTCACTTCGG CCCCGAAGCGACGGCCGAGGGCAGCAACATCAATATTGCCGAGAGAGATG GCCACCTGGACCACCGCAATGCGTCACAGCGTCGCCTCGCCGTGGGCGTC GCCTGCGGCGCGTGGCATACCCTCGTCGTGACGGCCGGTGGTAGGGTTTA CGCTTTCGGCGACGGTTTCACGGGGCAGCTCGGGCTTCCGCATCGGGGGT CACTCGAGACCAGCCAGGCGCTTTTGCCGCACGAGGTGTTGCTGGGAAGC AAGAGGATAAGCTTGAGCAATAGTAGGACCACCGCCGAGGCATTGCTGGT GCCGGAACACCGGCGAGTTCGTATTGCTCAGGTGGGTGGGTGGGTGGATG GGTCTGACAAAATTGCCTGATGTAAAAATAAAAATGATCAGGGTTGGGGA GGGGTGCGATCGTTTTTGTAGAGGCGTTTTTTTCCCTCGCGAAGTACTTG GAGAGCTATTTATGCGCGCGTGACAACGCAAAGAGTGCTGTTGTTGTTAT AGCCATTATCCATTTGTGTTTGCTGTAATCATTGTCGTTGTCGGAAGGAT GTTGCGGGGATCTCATCGTCTGTTTATTGATGGCCTTTTTTTTCATACCG TTGAAGTCAGGTCGCCGTTTTCTTGAGATATCAATCGCGTCTGCAAAACG TTCGCGCCCCATCGCGTAATAAAGAAATGTTTTTTGCTGTACTTTAGCGA TTGATGCATACATACAGACATGAACGTACATACATATCGTGGAACGCATG CCTGGGCTGCTCGCGAAAACGGGTCATGTGGCTTCCTCTTCGACGTGATT CAGTAGTAGGTAGGGTCATGGGATCGATAGCTCTCTGTCTGTGACTACTA CTGTAGTTTTGCCCTTTAGTCAGTTACGTGGGAAGGTCATGGCGGCTTCA GGGTCAACTACACATGCTCGTGTTTTACTCGTTTAATACTTGACAGAGAC ACGTCGGCAATCTCGTCGATGGTTTGTTCCCCAGTGATGAGCACTTTCGT TTTATCGTTAGAAGGCCTCTCCCCCCTCGCTGTCCGCGTGTCGCGTCGGC TGGTTTCTGTAACATGTTGTGCGTGTGACACAGGTGGCATGTGGTAGCTT TTCTAGCGCTGCTGTGTCTACCGAGGGCGTTTTGTACTGTTGGGGGAAAT GCGATGCCTCGTCAGATGTAGACCCGGTGTCTGACAAGTCTTACCTTCTG CCCAGGTGACTCATTTATTTGACGTGTATATAGAGCCTGAGCTGTCTTTT TCTCTATTTTTTGTGGCAGGAAGTTGAAAGTATGATGCCCAAGCATAAAC TAATGGATGTCTTAATCGTGCAGGAGCAGTATTGCAAGCTATCAGTGTGA ATGGCAGGTCGCAAGTCGTTCCAGCTTTTCACCACACACACGCGCGCGCA CCATGTGTTGGTTGGCAGCAGCTCTGCAGAGCTCTCTCTCTCTTCTTTTT CCTCTGTCTCTGCTCTTGGATATGTATGTTCACTGAACATGGACCCAACA AAGCTCCCTACAAAATGCAAGTCTATGCCATACACCACAACTGATAAGGC CTGAACAGGTGACCTCCAAGGCTGAAAACAACACGACCAGTTGGGCTGGA ACGCTGCACTTAAAAGCCAGGCGTTGTCTTATGCAGCGTTTTCTATGCTA ATGCTTGATATTGTTGTAATGTACTTTGAGCCATAGATGGCACCTACGAA CAATTGAAATGTATAACCTTCAACGTTGACAACCTGCCGAAGGTTCCAAC AGGGCGTGATGACTCCAAAACTACACGCCTACGCACGCCCTGCGGCCAAG TAGGTACATACGATTGGGACATGCAGATGAAAACGCTATGCCGTGAAATA ATTGAAAAGTCTTTAAGGCTGAACATATGATAATACGAAAAGTTTAGCTG GCAAAAAAGATGCGCGAATTAAACGCTAATTTTTGCGGCGGGGGTCTTCG TGTTTGGTTTGATGTATGTATCTAAGGATTAACCACCGAGTATATCAAAA TCCCGAATCGAATACGCGACACGAAAGTACGCCACCCGGTCGATGCGGTT GCAGCAAAAAAAAAAGATAACGTGGCAATGTTTTTTTCAGGAGTGACGGG CCATCATACAAAGCTCCGTCATTTATTAAGTCGCAAGTCTGACCAAGTCA AGCCAGGTCGTTAGCTCTCGTGTTGGCGTTCCTCTCGTGTTACTAGGCCT CGAGAGTGCCGCACGCAGACGCCTTTTGCGGGAGCCTCCTTTAGTTCCGC AGGAGAAGCATCAAACATTGCCTAAATAGCAGGTGCTGAAATGTTTGGAA GGCGGAGACCTATGACGCCCCATGGTGGGATTGTATGTATGCATCTTGAT CGACGATTTTGGGTTGGATTGTGCATGCAGCAGGTTTAATAATAAGAAGA GAGCTATCGCACCCGCCTCAACATTTGAAAATACCCAATGACCTGTTCGC GTTCGCTCAAAACATATGCATAGAGGGTGACACATACATTACACATACAA CCCCCCATTCCTCCCCGTCCATGAACCCCCTCACCACGAACTAAACCGCG AAACCGTAAAAAAAACGTTATTCTGTTGCAACTACGGCAGACGTGTTACG ACGACTGCGGGTAAGCCCTACCCCGTTTATTCGACGGTAGCTCAAGGGGG TTTCTTAACCATGGGCGTAGCGGACCGGGTTAATATCGACCCGGTTCCCC GGACCAAGGTGCATTCTTACAGGAAATCGCGGGCTTTCTTTTAAATGCGG GGGTCAGAAGGGTGGAGGGGTGGCGAGCGAGGGACGGACGGATGGGGGGG ACGAGTGCTGGTATGATGGCTTTCCTTGAGGTGACCCAAGATTTGTGTTC GTATGTGATTTATGTGGGACAAAGAGAGAGAGAGAGAGCTATAGGTACGG GTCTTAAGATCCCTTGTTGGAATTTGTCTCTCGGGTCAGGATTTTGAAAG AACAAATGGCGATCTGAGCAGTTCAGTTTGTCCTGTCGTGTCAGCTGATA GAGTCGATAGGCTGCGACCAGGGGGGCGGGGGGGGTAGGTGGGGCTTCAC AAGGTGAAAGAACTGGAAGGGGTGATCGTAAGGTATGATGAGAGCACCTT TCCGCTCTCGGAATAGATGACGGGCGACGCGAATGTCGTCGGTATGGTCA GGTTTGGTGGGAAAATTGCTTGAATAAAGCCTCGTTGCCTCGCGACAAAG AGAGAGAGAGAGAGAGAGCGATGTCGCGATGGTGTAGTATCATGGTGGTA CCAAATGATCGCTGATGGTGGCAGGGAGGGATTTTTTTGGGTGTTGTGTA TGTAATCTGTGGTTTGTTGAGAGTTTTATTGTGTTGGTGTACAACTGTGG TGTAGTTTTGTGTAGCTCTCCCTTTAATGATTTGATTTGTAGGCTGCCCC CCCCTCCCCCCCCCCGTTTCTTCCCGCTCCCCATCCATCTGCAATGTGAG TGCCGTGCTGTGTTTTTGAAGCAAACATAAATAGAAACGCAACATGTGAC GGCAAACATAAGTTTTTCCAAGTGTTGTTCTAAGTGTCGCTAGGGGAGTG TTGAGAGCAATCAACACTCACAATAGTCAAGTGTCGATACGTGCATGCAT TTGTTTATATGTGTGCATGCAATACCTGCGTCTTTTTGTTACTTGTTTTG GCAGGAGTAGTTTTGGAATCGAGGAAGACTCCACTGTCGCTCTCCCCGGT GTGTTTTGTGGTTGATGTCGCGGATCCGCGTGCACTCTCGCTTACCCTCA AGTCTCTCTATACAAACTTAATGGTTATGACCAGACCGCACAATTTTACG TATAATGATATGAGAGACCGGTACTACTACTACTACTAGTGTATTTCCAG TAGTCTACCTTACTGGAGTTATGTCAACCTGAGGTAGTTAGCAAAGAGGC AGCCTGTGAGTGTGCTATGGCAGCGCAGTTTTGAATCAGGCATATTTTTT CCCTTGCTCAAGCTTTGTTAGTGGGGACCCTAGAGGAAGGAAAGGGCGGA GAGGAAGCGTGCGCGGGGGGGGGGGGGGGTCGAAACTGTGGGTAACGGCG AGTGCAGCTGAACACTATGTTTCCATGGAGTATACTGTCAGGGGTCTTTT TGTCTGAAATCGAACTAATCCTGACTTGTGTACGTGTGTTTATTTCCACA ATTCGCGGATTTCCCAGGAATGGTACGGGTGTTTCGGCTCTCGTCACTCA CGCCGTTGCGCCCATTTATTACTGTTACTACAATGGTCAATGGTGGCTCT TGAAGGGGTATTTTGATTGGCTCGCTGCTTTTTTTGCGCGAGGGAGAATT CACCCCGTGTATTTTTGTGATGGGCATGTGGGCCCGTGTGGTGGTGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1357:17276..23725+

>mRNA_H-paniculata_contig1357.2204.1 ID=mRNA_H-paniculata_contig1357.2204.1|Name=mRNA_H-paniculata_contig1357.2204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig1357:17276..23725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCGGCTCGTCCCTCACTTCGGCCCCGAAGCGACGGCCGAGGGCAG
CAACATCAATATTGCCGAGAGAGATGGCCACCTGGACCACCGCAATGCGT
CACAGCGTCGCCTCGCCGTGGGCGTCGCCTGCGGCGCGTGGCATACCCTC
GTCGTGACGGCCGGTGGTAGGGTTTACGCTTTCGGCGACGGTTTCACGGG
GCAGCTCGGGCTTCCGCATCGGGGGTCACTCGAGACCAGCCAGGCGCTTT
TGCCGCACGAGGTGTTGCTGGGAAGCAAGAGGATAAGCTTGAGCAATAGT
AGGACCACCGCCGAGGCATTGCTGGTGCCGGAACACCGGCGAGTTCGTAT
TGCTCAGATGCCGCGGCTCGTCCCTCACTTCGGCCCCGAAGCGACGGCCG
AGGGCAGCAACATCAATATTGCCGAGAGAGATGGCCACCTGGACCACCGC
AATGCGTCACAGCGTCGCCTCGCCGTGGGCGTCGCCTGCGGCGCGTGGCA
TACCCTCGTCGTGACGGCCGGTGGTAGGGTTTACGCTTTCGGCGACGGTT
TCACGGGGCAGCTCGGGCTTCCGCATCGGGGGTCACTCGAGACCAGCCAG
GCGCTTTTGCCGCACGAGGTGTTGCTGGGAAGCAAGAGGATAAGCTTGAG
CAATAGTAGGACCACCGCCGAGGCATTGCTGGTGCCGGAACACCGGCGAG
TTCGTATTGCTCAGGTGGCATGTGGTAGCTTTTCTAGCGCTGCTGTGTCT
ACCGAGGGCGTTTTGTACTGTTGGGGGAAATGCGATGCCTCGTCAGATGT
AGACCCGGTGTCTGACAAGTCTTACCTTCTGCCCAGGTGGCATGTGGTAG
CTTTTCTAGCGCTGCTGTGTCTACCGAGGGCGTTTTGTACTGTTGGGGGA
AATGCGATGCCTCGTCAGATGTAGACCCGGTGTCTGACAAGTCTTACCTT
CTGCCCAGACGTGTTACGACGACTGCGGGTAAGCCCTACCCCGTTTATTC
GACGGTAGCTCAAGGGGGTTTCTTAACCATGGGCGTAGCGGACCGGGTTA
ATATCGACCCGGTTCCCCGGACCAAGGTGCATTCTTACAGGAAATCGCGG
GCTTTCTTTTAAACGTGTTACGACGACTGCGGGTAAGCCCTACCCCGTTT
ATTCGACGGTAGCTCAAGGGGGTTTCTTAACCATGGGCGTAGCGGACCGG
GTTAATATCGACCCGGTTCCCCGGACCAAGGTGCATTCTTACAGGAAATC
GCGGGCTTTCTTTTAA
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