mRNA_H-paniculata_contig1357.2205.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1357.2205.1
Unique NamemRNA_H-paniculata_contig1357.2205.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1357.2205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1357contigH-paniculata_contig1357:25796..26609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1357.2205.1prot_H-paniculata_contig1357.2205.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1357 25796..26605 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.2968447-CDS-H-paniculata_contig1357:25795..259211622929073.2968447-CDS-H-paniculata_contig1357:25795..25921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 25796..25921 -
1691480721.4520369-CDS-H-paniculata_contig1357:25795..259211691480721.4520369-CDS-H-paniculata_contig1357:25795..25921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 25796..25921 -
1622929073.3265114-CDS-H-paniculata_contig1357:26479..266051622929073.3265114-CDS-H-paniculata_contig1357:26479..26605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 26480..26605 -
1691480721.462466-CDS-H-paniculata_contig1357:26479..266051691480721.462466-CDS-H-paniculata_contig1357:26479..26605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1357 26480..26605 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.3463075-UTR-H-paniculata_contig1357:26605..266091622929073.3463075-UTR-H-paniculata_contig1357:26605..26609Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1357 26606..26609 -
1691480721.4721074-UTR-H-paniculata_contig1357:26605..266091691480721.4721074-UTR-H-paniculata_contig1357:26605..26609Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1357 26606..26609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1357.2205.1

>prot_H-paniculata_contig1357.2205.1 ID=prot_H-paniculata_contig1357.2205.1|Name=mRNA_H-paniculata_contig1357.2205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MLLSKDPSQRPAMASVKDFLDGLVRDREAVDEGLATLGQDGDVVPLEKGA
QATTKAEVPPITLSCAPSAAVEKGFEEEKGGEWT
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mRNA from alignment at H-paniculata_contig1357:25796..26609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1357.2205.1 ID=mRNA_H-paniculata_contig1357.2205.1|Name=mRNA_H-paniculata_contig1357.2205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=814bp|location=Sequence derived from alignment at H-paniculata_contig1357:25796..26609- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGATGCTGCTTTCCAAGGACCCTTCGCAGCGCCCGGCCATGGCATCCG
TGAAGGACTTTCTCGACGGTCTAGTTCGCGACAGAGAAGCGGTCGACGAA
GGTCTCGCAACGCTTGGACAGGATGGTGATGTGAGTCCTTCTCCAACTAT
GTTCTATGTTCCCATGGGTAGCCGAGAGAAGGGCGTTAGGGATTATCGAT
TAGTCAATCAGGTTGTTCTTGGCGGGTGGCTTTTTGTGTGTATCAAAGTA
CGAGACATATCAACGAACGAACGAACGGACGAACGAACCAGAGCAATAAT
ATGCGGTCAAGGGAATATTGCTCGACTGCAGCGAGTATTGCTGTGGCATG
TCACGTGACCATGTGTTGAACACGCTACAGTAGTGAGTCTACAACGTCGA
ACCTAACAGTGAGCAGGCGGTCAATTGCCTAGTATATTACGCTAGGAAAA
AAAGAAGAAAAAAAGACTTTTCCGCCGATTCGTGTTCATCGGCATGCGGG
ATATCACTTTCGTATCGTGTGTTTTGGTATGGAAAATGCGTTGTTCGGAG
GGGAGTGTGCAATGGTACGGTTCAACGTTGAGTGTATGCGGGCGTCGCAG
CAAAGATTGATTCTTGCCCAGGGATACACATTTGATTCCGTTCCACCCCC
CCTGCATCTCTTTGCGCCATCGCGGGAAATCAATACAGGTGGTGCCCTTG
GAGAAGGGGGCACAGGCAACAACGAAGGCGGAGGTCCCCCCCATCACCTT
GTCTTGTGCCCCGTCTGCAGCTGTGGAGAAGGGGTTTGAGGAGGAGAAAG
GCGGAGAATGGACA
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Coding sequence (CDS) from alignment at H-paniculata_contig1357:25796..26609-

>mRNA_H-paniculata_contig1357.2205.1 ID=mRNA_H-paniculata_contig1357.2205.1|Name=mRNA_H-paniculata_contig1357.2205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig1357:25796..26609- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCTTTCCAAGGACCCTTCGCAGCGCCCGGCCATGGCATCCGTGAA
GGACTTTCTCGACGGTCTAGTTCGCGACAGAGAAGCGGTCGACGAAGGTC
TCGCAACGCTTGGACAGGATGGTGATATGCTGCTTTCCAAGGACCCTTCG
CAGCGCCCGGCCATGGCATCCGTGAAGGACTTTCTCGACGGTCTAGTTCG
CGACAGAGAAGCGGTCGACGAAGGTCTCGCAACGCTTGGACAGGATGGTG
ATGTGGTGCCCTTGGAGAAGGGGGCACAGGCAACAACGAAGGCGGAGGTC
CCCCCCATCACCTTGTCTTGTGCCCCGTCTGCAGCTGTGGAGAAGGGGTT
TGAGGAGGAGAAAGGCGGAGAATGGACAGTGGTGCCCTTGGAGAAGGGGG
CACAGGCAACAACGAAGGCGGAGGTCCCCCCCATCACCTTGTCTTGTGCC
CCGTCTGCAGCTGTGGAGAAGGGGTTTGAGGAGGAGAAAGGCGGAGAATG
GACA
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