mRNA_H-paniculata_contig13555.2199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13555.2199.1
Unique NamemRNA_H-paniculata_contig13555.2199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13555.2199.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.970e-18
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 IHSTYDLKGSSLGRSAKEGEKVLKDNDLAERQGKLHLGSKREAFL 135
            IH+TYDLKGSSLGR AK GEKVLKDNDLAERQGKLHLGS+REAFL
Sbjct:  917 IHNTYDLKGSSLGRDAKPGEKVLKDNDLAERQGKLHLGSQREAFL 961
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BLAST of mRNA_H-paniculata_contig13555.2199.1 vs. uniprot
Match: D8LKC9_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC9_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.970e-18
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 IHSTYDLKGSSLGRSAKEGEKVLKDNDLAERQGKLHLGSKREAFL 135
            IH+TYDLKGSSLGR AK GEKVLKDNDLAERQGKLHLGS+REAFL
Sbjct:  642 IHNTYDLKGSSLGRDAKPGEKVLKDNDLAERQGKLHLGSQREAFL 686
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BLAST of mRNA_H-paniculata_contig13555.2199.1 vs. uniprot
Match: A0A6H5KVE7_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.370e-14
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 IHSTYDLKGSSLGRSAKEGEKVLKDNDLAERQGKLHLGSKREAFL 135
            IHS YDLKGSSLGRSAKEGEKVLKDNDL  + GK+HLGS++ AF+
Sbjct:  131 IHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFV 175
[Close]
BLAST of mRNA_H-paniculata_contig13555.2199.1 vs. uniprot
Match: D8LLT5_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.670e-14
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 IHSTYDLKGSSLGRSAKEGEKVLKDNDLAERQGKLHLGSKREAFL 135
            IHS YDLKGSSLGRSAKEGEKVLKDNDL  + GK+HLGS++ AF+
Sbjct:  387 IHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFV 431
[Close]
BLAST of mRNA_H-paniculata_contig13555.2199.1 vs. uniprot
Match: A0A6H5JMY7_9PHAE (PIPK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMY7_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-10
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 IHSTYDLKGSSLGRSAKEGEKVLKDNDLAERQGKLHLGSKREAFL 135
            IH  YDLKGS + R+AKEGEKVLKDN+L E + K  LGS+R+AFL
Sbjct:  269 IHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFL 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13555.2199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KUU1_9PHAE1.970e-1891.11PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKC9_ECTSI1.970e-1891.11PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KVE7_9PHAE1.370e-1477.78PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLT5_ECTSI1.670e-1477.78PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMY7_9PHAE1.430e-1066.67PIPK domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13555contigH-paniculata_contig13555:6634..6768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue5.3e-15
Seed eggNOG ortholog2880.D8LKC9
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.6402767-CDS-H-paniculata_contig13555:6633..67681622929072.6402767-CDS-H-paniculata_contig13555:6633..6768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13555 6634..6768 +
1691480721.2121232-CDS-H-paniculata_contig13555:6633..67681691480721.2121232-CDS-H-paniculata_contig13555:6633..6768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13555 6634..6768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13555.2199.1prot_H-paniculata_contig13555.2199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13555 6634..6768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13555.2199.1

>prot_H-paniculata_contig13555.2199.1 ID=prot_H-paniculata_contig13555.2199.1|Name=mRNA_H-paniculata_contig13555.2199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
IHSTYDLKGSSLGRSAKEGEKVLKDNDLAERQGKLHLGSKREAFL
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mRNA from alignment at H-paniculata_contig13555:6634..6768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13555.2199.1 ID=mRNA_H-paniculata_contig13555.2199.1|Name=mRNA_H-paniculata_contig13555.2199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig13555:6634..6768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCACAGCACGTACGACCTGAAGGGGTCATCTCTGGGGCGGTCAGCTAA
GGAAGGGGAAAAAGTACTGAAGGACAATGACCTGGCGGAGAGACAGGGGA
AGCTTCACCTCGGGTCCAAGCGAGAAGCATTTCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig13555:6634..6768+

>mRNA_H-paniculata_contig13555.2199.1 ID=mRNA_H-paniculata_contig13555.2199.1|Name=mRNA_H-paniculata_contig13555.2199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig13555:6634..6768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCACAGCACGTACGACCTGAAGGGGTCATCTCTGGGGCGGTCAGCTAA
GGAAGGGGAAAAAGTACTGAAGGACAATGACCTGGCGGAGAGACAGGGGA
AGCTTCACCTCGGGTCCAAGCGAGAAGCATTTCTCATTCACAGCACGTAC
GACCTGAAGGGGTCATCTCTGGGGCGGTCAGCTAAGGAAGGGGAAAAAGT
ACTGAAGGACAATGACCTGGCGGAGAGACAGGGGAAGCTTCACCTCGGGT
CCAAGCGAGAAGCATTTCTC
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