mRNA_H-paniculata_contig13533.2189.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13533.2189.1
Unique NamemRNA_H-paniculata_contig13533.2189.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13533.2189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13533contigH-paniculata_contig13533:3508..4082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.9323392-UTR-H-paniculata_contig13533:3507..37491622929070.9323392-UTR-H-paniculata_contig13533:3507..3749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13533 3508..3749 +
1691480720.428697-UTR-H-paniculata_contig13533:3507..37491691480720.428697-UTR-H-paniculata_contig13533:3507..3749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13533 3508..3749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.946526-CDS-H-paniculata_contig13533:3749..40821622929070.946526-CDS-H-paniculata_contig13533:3749..4082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13533 3750..4082 +
1691480720.439212-CDS-H-paniculata_contig13533:3749..40821691480720.439212-CDS-H-paniculata_contig13533:3749..4082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13533 3750..4082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13533.2189.1prot_H-paniculata_contig13533.2189.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13533 3750..4082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13533.2189.1

>prot_H-paniculata_contig13533.2189.1 ID=prot_H-paniculata_contig13533.2189.1|Name=mRNA_H-paniculata_contig13533.2189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MNVRPKARVVTRNASRHRVPESVCQRPSSFCLLRTSPSCYPLHHTTGVKS
NSRYAHFIAHIHHPHPPVPGAVFCLPVAEHTVQRTPRTDLVAANVCVYIE
LPRSCILGAEF
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mRNA from alignment at H-paniculata_contig13533:3508..4082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13533.2189.1 ID=mRNA_H-paniculata_contig13533.2189.1|Name=mRNA_H-paniculata_contig13533.2189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at H-paniculata_contig13533:3508..4082+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCCTTTCCGGTTGGCAAAACTTCACATCGTCGTTTCCGGCAATGGCAT
TTGTCTTATCGACCACTTCCTTCAAGTAAAGATCCCGTTCCCACTTCCAT
TTGCGGCACGTGAGAATCACATGCTGGAGGGTCGGCTCCGCTGCCCCTGC
AGCACGAGCATTCCTCGAGGTATCTCTCCAGGGCCGGCTTGCACTTAGCC
AATCGTTGAGCTGATCAAAATCCACCCAGTCGGCATTTAACGATGAATGT
CAGACCGAAGGCGAGGGTCGTCACCCGTAATGCCTCCCGGCATCGCGTTC
CTGAGTCCGTCTGCCAAAGGCCCTCTTCCTTCTGCCTGCTCCGAACTTCG
CCTTCCTGCTACCCGTTACACCACACGACGGGTGTCAAAAGCAACTCTCG
TTACGCACACTTTATTGCACACATTCACCATCCCCACCCTCCAGTGCCCG
GAGCAGTATTCTGCCTTCCTGTTGCCGAACATACCGTACAAAGGACGCCT
AGAACAGACCTTGTCGCCGCAAATGTTTGTGTGTATATCGAGCTTCCCCG
ATCTTGCATTCTGGGAGCAGAATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig13533:3508..4082+

>mRNA_H-paniculata_contig13533.2189.1 ID=mRNA_H-paniculata_contig13533.2189.1|Name=mRNA_H-paniculata_contig13533.2189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig13533:3508..4082+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGTCAGACCGAAGGCGAGGGTCGTCACCCGTAATGCCTCCCGGCA
TCGCGTTCCTGAGTCCGTCTGCCAAAGGCCCTCTTCCTTCTGCCTGCTCC
GAACTTCGCCTTCCTGCTACCCGTTACACCACACGACGGGTGTCAAAAGC
AACTCTCGTTACGCACACTTTATTGCACACATTCACCATCCCCACCCTCC
AGTGCCCGGAGCAGTATTCTGCCTTCCTGTTGCCGAACATACCGTACAAA
GGACGCCTAGAACAGACCTTGTCGCCGCAAATGTTTGTGTGTATATCGAG
CTTCCCCGATCTTGCATTCTGGGAGCAGAATTCATGAATGTCAGACCGAA
GGCGAGGGTCGTCACCCGTAATGCCTCCCGGCATCGCGTTCCTGAGTCCG
TCTGCCAAAGGCCCTCTTCCTTCTGCCTGCTCCGAACTTCGCCTTCCTGC
TACCCGTTACACCACACGACGGGTGTCAAAAGCAACTCTCGTTACGCACA
CTTTATTGCACACATTCACCATCCCCACCCTCCAGTGCCCGGAGCAGTAT
TCTGCCTTCCTGTTGCCGAACATACCGTACAAAGGACGCCTAGAACAGAC
CTTGTCGCCGCAAATGTTTGTGTGTATATCGAGCTTCCCCGATCTTGCAT
TCTGGGAGCAGAATTC
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