mRNA_H-paniculata_contig13531.2188.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13531.2188.1
Unique NamemRNA_H-paniculata_contig13531.2188.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13531.2188.1 vs. uniprot
Match: D7FQW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQW4_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.120e-19
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 LGFVLGVGTAVVLKKSSKKYAYAVGGTCALAQFLSRSDFMGCGGKLGWSKLSDDELSPCERETCPCVWRTMRILKHTIVGAVPSGAGFAAGFYGALK 291
            LGF+ G+GT V ++K ++  AYAV G    AQ++SR+D +GCGGKLGW KL D +L  CERE    +WRT R  KHT+  ++ +  G+  G    LK
Sbjct:  114 LGFLFGLGTGVCVRKVNQNAAYAVSGALVAAQYVSRTDILGCGGKLGWPKLDDYKLRDCERENFGFIWRTGRTFKHTVQESLETCEGYVIGLAAGLK 210
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13531.2188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQW4_ECTSI2.120e-1946.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13531contigH-paniculata_contig13531:1129..5081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1568
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13531.2188.1prot_H-paniculata_contig13531.2188.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13531 1129..3821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.8559344-CDS-H-paniculata_contig13531:1128..12241622929070.8559344-CDS-H-paniculata_contig13531:1128..1224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13531 1129..1224 +
1691480720.3885596-CDS-H-paniculata_contig13531:1128..12241691480720.3885596-CDS-H-paniculata_contig13531:1128..1224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13531 1129..1224 +
1622929070.869666-CDS-H-paniculata_contig13531:2800..29601622929070.869666-CDS-H-paniculata_contig13531:2800..2960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13531 2801..2960 +
1691480720.3971672-CDS-H-paniculata_contig13531:2800..29601691480720.3971672-CDS-H-paniculata_contig13531:2800..2960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13531 2801..2960 +
1622929070.880581-CDS-H-paniculata_contig13531:3771..38211622929070.880581-CDS-H-paniculata_contig13531:3771..3821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13531 3772..3821 +
1691480720.4106681-CDS-H-paniculata_contig13531:3771..38211691480720.4106681-CDS-H-paniculata_contig13531:3771..3821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13531 3772..3821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.891847-UTR-H-paniculata_contig13531:3821..50811622929070.891847-UTR-H-paniculata_contig13531:3821..5081Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13531 3822..5081 +
1691480720.4188905-UTR-H-paniculata_contig13531:3821..50811691480720.4188905-UTR-H-paniculata_contig13531:3821..5081Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13531 3822..5081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13531.2188.1

>prot_H-paniculata_contig13531.2188.1 ID=prot_H-paniculata_contig13531.2188.1|Name=mRNA_H-paniculata_contig13531.2188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
LGFVLGVGTAVVLKKSSKKYAYAVGGTCALAQFLSRSDFMGCGGKLGWSK
LSDDELSPCERETCPCVWRTMRILKHTIVGAVPSGAGFAAGFYGALKTGK
I*
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mRNA from alignment at H-paniculata_contig13531:1129..5081+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13531.2188.1 ID=mRNA_H-paniculata_contig13531.2188.1|Name=mRNA_H-paniculata_contig13531.2188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3953bp|location=Sequence derived from alignment at H-paniculata_contig13531:1129..5081+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGCTTTGTCCTCGGAGTTGGGACCGCAGTTGTGTTGAAGAAGTCCTC
GAAGAAGTACGCTTACGCCGTGGGTGGTACTTGCGCCTTGGCACAGGTGA
GGGGAAAAGAACAAATTTGATGATCGCCATTATCTAATGATGCGTTCGGC
GATATCCAAAGGAAAAGTCAAGCAGCAGAGATTATGAGAAGGAGGTTTTA
CAAGCATAGTAACCCCCCTAGTTTGGTCATTTATGGATGAGTAATCTGGT
AGCTTGGAGGTGCTGAGCATGCTTCCATTTGGTTTTACGCATGTATAGTG
TCATATTTTCTATGGTAGTCTGATTCATCTCCTCTTTAAACCCCTCTATT
GGCCATGATCTAATTTTGCTGACGAGTGTAAACAATTGAAGTTTGAAGTT
AGCTGCATAACCTACCTCAACATGGGTACAGAGGAGTTATTATGTGAGCT
TCAGAGCTATAGTTGAATTGGCGACTTGACAAGGTTGACTTGATGAATGA
AAGTCTTGGAGGGTGTATATTGTTCATGTGAAAACTATTTTACCTCGTAC
CGACAGTACACATGCGAGTGATACAGTAATACTCCCCGTGTTACGGTTGC
TGTAGCTCGAGTCATGCATGATAGAAGAGGAACGTGAAGTCCTGGTACTT
GATCATGATGAGATCAGAATTTGACCTAGTATGAACATGATCCTGTCGGT
CTACCAAGTAGCATGCCCCCCAAATATTCGTTGTGTCCAGTCGAAATTCA
ATTCAGCTGGTTGTTGTGCGTGCTTTGTTGTGGATGAGTGCTTCGTTGTG
GATGAGCAGCAAGATTGTTTGTATCAGGAATGCCTTGTGAAGGTCATACG
AAGTGTCCAGGGTCGTATTGTCACGGATGGGAACAGTAGTCTATGTTGCT
GTCCTTGTTCCAAGCTTTGGTCTGAGTCCTGGTACTCGCTCGTGGGCGGA
AGTTGTTGATAGTATCGGGGGAGCGTTTATCCTCGCAGGCCGTTCATGTT
GTACGATGTTCAACCCTCCACACCCCCACACCCTACCTGCCCGCCCGCCA
TGGCAGTCTCGTGCAAATCCAATGGACCCGTGCGAGAGACCCCTATCCCC
CCGCTCGCCACTGTCTATATAAAGTCGAAAGCGGGCGTTCCCGCATGTCA
TGGTGTCAGGTGAAACATGCTTATTCCGCCCCACTGAGAGGGGCGGAAGA
GTGTCTGCAATAGGAGGAATGGGTGGTGAAGAAGTACAGTCAGCAGTATT
GAAATTACTGAGCGTACCGTCCTTATTTGTTGTACGGGTAATGTACTCTG
TACTGTGATGCTTTCGGAGTACCCATTTGGTCATGCTCCAATTTTGTCGA
TTTAAGTGTACGCGACTGAGATTTGAGGTCATGTGCATAGCTTCAACAGG
GGTACGATGCAGTTATCATACAAATTTTATGGAGCTACTAACCGCGGCAG
GTGGGTTGACTCGTGAAATGCGTTGGTGAGTGAATTTGCGTTTGTTCTAA
CAATATGAGGTGTTCAGGTTTATACTATGATCTCGTGTTTACGCATACTA
CACACAAAGTGATACTGCCTTGCGGGGGTAGATCCCCCGCCACCACCACC
GTCACCTCGACATACTTGCTTCGTTTTACTTTACTTTGCTTTGCTTGCTA
TGAACACCTCCAACCCGGCTAGTTCCTGTCGCGCTCGGATTTCATGGGCT
GCGGCGGCAAGCTAGGCTGGTCCAAGCTGAGCGACGATGAACTTTCCCCC
TGCGAAAGGGAGACGTGCCCCTGCGTGTGGCGCACGATGCGCATTCTCAA
GCACACGATTGTCGGTGCTGTGCCGTCCGGCGGTAAGAAGCAGTTTTTTT
TTCTTTCTGGGGGGGACGGTAGGTGAAAGAGAGGACAGAAGCAATCACTT
TCTTCTGCGTAATTATAGTGCGAAATGCTAATTGTTATTACCAAGTATAT
TTCCTGTTTTCCAAACTAGAGGTGTACGTGTATGTATGTACATACATACG
CATTCACATATATTCTGTTTTCATATGTGTGTATTTGTATGCTTGATGTG
GTACTTTAGTCTTCAGTTGAATTGTTGTGCAAAGTGCTAGATTTTCATTA
TTTTACGCGCAAGAATGAGGTACATATATTTCGTCTGTTTTATCATGCGA
AAAGAACTGGGTTTTTGCGATGGGGTTGGTGCTGACCACTTGAAAAAAAA
TGATTTCATGCAATTCCCTTTTGATTATGACCTTGGCATACGCTGTTAAC
TGTGACGTGTAATCGCGGGTTGCATTTTACCGTATCTACTCTCAGGTGTG
CTTCCAAAGCGGTCTTTCCACATATTTTAGTGGTGACTTCCACCCCCATT
AGACGTTTTGCTGGAAAGGGTGTACTCGTACTGAGCCCAGTAGTCTCTCA
TTAGCTGGTTACACCCAATCAGGCTCCCCGCTGTCATGATCTTGATCCTC
TTACCTACGGCAGGTACTTTAAGGTTATCCCCCCTCTGTGTTTGGGCTGT
TTGACGTCGCTGGCATGTTCAGTATGCATAGGATATATGACTTCAGCAAA
TTGAGCTCTTTCTCACCCTCACTCCCCTCCCCTCCACCCTCTGCGGGCAC
ACGCTCATTTTACTGCCGCATATGTGGTTCTGCAAATCCTTAGCTGGTTT
CGCAGCCGGCTTCTACGGTGCTCTGAAGACAGGCAAGATTTAAGTGGACA
AGCACCCTCCATGCGTTGTCGTGCTTGCGAAGAGGCGCGGCCAACAAATT
TTATCGGTTGAATTGTATCCTTTCCCCCCGCCCACCCCCCGGTCCCCATC
AAGTTCTTTGTGTGGATCACTGCGGAAGGTCTTGTATAGTGTCCCCCTAA
ATGATGGGTTTTTTGGCGGTCAGGCATTTTCGCGAGTGTCGAGAAAGACG
GCTGGAGTTTGTAACGCCGGATTATGGTCTTTCACGTTTTTTTTGTTATA
TGGGATGAACGAGGCAAGTATTGGAGATGAGGGTGAGAGGGGGGAAGCAT
TGACGAAACTGACAAGGCTCTACACGTACCTAGCGTGAAACGCAAACAAG
AGGCACAGAGGCGTGTTTAGCGTCTTTTTTTTTAGATGTCGATTTTTACA
GGAAGAAGGAAACAAACCTGCCCCCCTTAGAAAGATTGAAAAATATAAAA
TAGAAGTAGATATTGAAGTAGATCAATTTGATGAGTTGTCATACAACGAC
TAGAGTATGTGCTACAGTACGTCCAAACGGAGGCGCAATGGAGGCACTGT
ATTATTGTAGATCAGTAGACAAGAGAAGCATCCCGTTACTGTATGTAGGG
CCCGCGCAAGCCGCCGTGTACGTTTTCTTCGTTGTTGCTAAAACTATATA
ATGATCGCAGTATTTCATTGGTTGAGCATTGTAGGAATAAGAACACGAAA
AAGAGAATGGGGAGACTGCGAAGTAGTTTGAATTTGTGCGATACAAACCC
AGAGTTTTTGTTGTGTTGTCCGCATACATACATTCAGATCTTCTTGGAGA
CGTTTTTTCCAAGGAGGCTTTGAGCCTCGAGGATGGTACGGAGGTAGAAG
GGCGAGGGGTGCAGGGGTGGCGGGGGTTCGTCCAAGCTGCAGCCAGGCAG
CAGTTGGTCGTTTTTAGCTTCCTTTGTGCTTTTGCGTGTTTTAGTTGGTA
GCCTGTTGACTAACACCTATCGAAGAAACTGGTTAGAAACGAGGGGTTCT
CCATTCATTTAACCCATGCTTTTACTGACCTGCATATTCACCTCCAAGGA
TTGTCATGGCCCACTCCAGCTGCACAGGTTGGTTCTATACGTTATGTTCC
AAATCATTTTATTGTTGCTGTACCAAAGGCGGGGGTCTCACGACAGTGTC
CAGACGCCAGCACCATGTATGCAAAGGTTACACAGGCGTTACACATCACA
AACAGCCGGTACAGCCGAGAGATGCGAACAAAGCGAAGGTGGTAGCTGCG
GGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13531:1129..5081+

>mRNA_H-paniculata_contig13531.2188.1 ID=mRNA_H-paniculata_contig13531.2188.1|Name=mRNA_H-paniculata_contig13531.2188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig13531:1129..5081+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGCTTTGTCCTCGGAGTTGGGACCGCAGTTGTGTTGAAGAAGTCCTC
GAAGAAGTACGCTTACGCCGTGGGTGGTACTTGCGCCTTGGCACAGCTGG
GCTTTGTCCTCGGAGTTGGGACCGCAGTTGTGTTGAAGAAGTCCTCGAAG
AAGTACGCTTACGCCGTGGGTGGTACTTGCGCCTTGGCACAGTTCCTGTC
GCGCTCGGATTTCATGGGCTGCGGCGGCAAGCTAGGCTGGTCCAAGCTGA
GCGACGATGAACTTTCCCCCTGCGAAAGGGAGACGTGCCCCTGCGTGTGG
CGCACGATGCGCATTCTCAAGCACACGATTGTCGGTGCTGTGCCGTCCGG
CGTTCCTGTCGCGCTCGGATTTCATGGGCTGCGGCGGCAAGCTAGGCTGG
TCCAAGCTGAGCGACGATGAACTTTCCCCCTGCGAAAGGGAGACGTGCCC
CTGCGTGTGGCGCACGATGCGCATTCTCAAGCACACGATTGTCGGTGCTG
TGCCGTCCGGCGCTGGTTTCGCAGCCGGCTTCTACGGTGCTCTGAAGACA
GGCAAGATTTAACTGGTTTCGCAGCCGGCTTCTACGGTGCTCTGAAGACA
GGCAAGATTTAA
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