mRNA_H-paniculata_contig1353.2186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1353.2186.1
Unique NamemRNA_H-paniculata_contig1353.2186.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1353.2186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1353contigH-paniculata_contig1353:19316..23749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size931
Cds size495
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1353.2186.1prot_H-paniculata_contig1353.2186.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1353 19316..23315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.512966-CDS-H-paniculata_contig1353:19315..194721622929070.512966-CDS-H-paniculata_contig1353:19315..19472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 19316..19472 -
1691480720.239806-CDS-H-paniculata_contig1353:19315..194721691480720.239806-CDS-H-paniculata_contig1353:19315..19472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 19316..19472 -
1622929070.5288472-CDS-H-paniculata_contig1353:20564..208431622929070.5288472-CDS-H-paniculata_contig1353:20564..20843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 20565..20843 -
1691480720.2518404-CDS-H-paniculata_contig1353:20564..208431691480720.2518404-CDS-H-paniculata_contig1353:20564..20843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 20565..20843 -
1622929070.5428293-CDS-H-paniculata_contig1353:23256..233151622929070.5428293-CDS-H-paniculata_contig1353:23256..23315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 23257..23315 -
1691480720.2656574-CDS-H-paniculata_contig1353:23256..233151691480720.2656574-CDS-H-paniculata_contig1353:23256..23315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1353 23257..23315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.5567822-UTR-H-paniculata_contig1353:23315..237491622929070.5567822-UTR-H-paniculata_contig1353:23315..23749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1353 23316..23749 -
1691480720.2772963-UTR-H-paniculata_contig1353:23315..237491691480720.2772963-UTR-H-paniculata_contig1353:23315..23749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1353 23316..23749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1353.2186.1

>prot_H-paniculata_contig1353.2186.1 ID=prot_H-paniculata_contig1353.2186.1|Name=mRNA_H-paniculata_contig1353.2186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
MDRRRSGGYGSGSYGSGGNRYSNNSGNSKQQGGDGEAEPGGGGRWENDMY
ESTQQSHQRDGGFNNAGGNQWGGNRQGRGGGGRGGRGRNYGFGGGDRSGD
GFSREGGGGGARRDYRGGGYGRGQYSDNNQSNQSNGQDNNWGNTAGGSGV
ADNWAGGGERDPGAG
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mRNA from alignment at H-paniculata_contig1353:19316..23749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1353.2186.1 ID=mRNA_H-paniculata_contig1353.2186.1|Name=mRNA_H-paniculata_contig1353.2186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4434bp|location=Sequence derived from alignment at H-paniculata_contig1353:19316..23749- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAATATAAGGATGGCGATAGCAATTAGGCTTCCATAGAAAATAACGT
AAAGGATGGAGTGTATTAGTTGTTTTCGCGATACTTACCTTTCACCCTTT
CTCTGGTCGCCTCTTCCGCCGGTGGTATGATGCAATGGATGTGGTGAGAC
ATCGGCTCGCAGACACCTGTATTTCGCTTGCGAGGCCTATGCGTTGCTGA
ACACAACCGCACAAGAAAGCATAAACATAGGGTAAATCGCATTATAACTA
TACGGTTATTTTTGCCAACAATGGATGGGCTTTACTGAGCATACCTCATA
TCACAGAGAAGCCCCGCTCTATCGTCGTGTGCGGTCTGGCATAGAAACAG
GACCCAAGACGATTGAAGTGAATAACTAAGACAAAGGACAAGCAGCCAGG
ACCACACGAGAGACCTAAAAGATCTGTTACTACCATGGACAGAAGAAGAA
GTGGCGGCTACGGCAGTGGCAGCTACGGTAGCGGTGGCAACAGGCGAGTA
AAGCAGGTGGTAATGAAGTGACAAGCGCGTCTTACATTCGAGATCCGCAA
GTAGAGTGATTGAAGACACACACAAAAACACAGATGGAGACCAGACGCTG
ACTTCAGTTTTTAACATCCATATTATGAGAAAGATCATATATACGAGTAC
ATGTGAACAAACTGTCTGGTTGTACCTAGCATATTACTGCTTGCTTTACG
GCGTTGAAGCGTCTACCAGCTGCTGATACCATCCTCGTGCTGCGTGGGGC
CTGTACCCTACCGTTGCCCAGTTTAGATTATTCGTGACACAGGATAGCTG
GCTGGCGCCGAACGAAAAATATACCTGGTTCGAAAACTGTATGAATATGA
ATTTGAATATCCAAATAATCCAAAAATCTCCATTTCGTAAATTTGTGCAG
GGTCCTGAAGTCCACCCTCGCACTCGGATGCGAAGGCGGGCTGGCGATTA
ATTAGGGCTGGGTCGCAAACATTCGTGTTGAATAATACGGCGTAACACAA
AGCACTAGGAAGAGTATCCATTAATAGTTTCTAGAAGCTCAGAGATACAA
TTCTGTTGTGCATATTTCGACTTGAACGAACCCCTAGGCCCACTGGTTTT
CGCGCCGCGTGGCAGCCACGCAGCAGGAAACAAATAATTTGCTAGTTTTT
TCGAAATTAGGAGTTCAAGGCTCGTCCTCATGCTCTCAGATTTATTTACA
GGGTGCTTTAGCAAAAGCTGGAGTAGGGAGATACGCTGACCTTCGGGATT
AATTCGTACAGCAATGAGAGCGATTTGATGTGCAGAGTATGACCAGTATA
CCATGTGTGCATCAGCAACATGAGGTTTTATTTATGTTTTACTGGTATGT
ATCTCCACCCTGGTTTGTTATTATTATATATTTTTCCGAATAATCTTCAA
TTGTCGAATTCACGAGAATAATCACAGATGATAGCAACGAAGTGTGGTAT
GTGCTTATAACTATCGTACATTCCGGATGGAAAATGAAATGACTTCGAGC
GCTGTAGCAGTGATCGTCGGCAGAGAATGCACGTCACTCGCTACAGATTG
TCTCTGGACAGCGATTCTCCCTACCCCTGTGATCATGTTCGTGAGCGTTA
TTTTTTTTCTCTTTCTTTGGAGATGGAGGCAAGGATATCTGTGTCGTCCT
GCATCCACCGGTGGGCATCCATCCATCTGTGCGTGTATGATATCTCTCGT
CCAGTGTGTATGCGAATCGTATCGTGAAATATATTTAGAAAACTGGAGCA
CCGATGACACACTATCCAATCGTCGTTCGCCGTTTTTTTATGTCAAATGA
AGAAAATCCGTAATCGTAGCAGTCAACAAGATTTACATGTTGTGACTGTC
TGTACACTGTCTGTACACTGTCTGTACACTGTCTGTACACTTGTTCTGTC
GCCTATATTCTTGGTACTTGTTTGTTTACGGAGCTATCCATGGATCCCAA
AAATCGGTGAAGGTCTGACGGCAGCCAAATATGAATCCCACATATCAAAT
AGAGGCGTATGAAAGTGAATACCTTCATTGGAAAGCTTCAAATCTGGTGA
CGGTGCGTCCGGATAAAATGTGCGTCACTTTTATCCGACCCCTCCTCGTT
TGATTTCTGTGAAAATGCATCGAGGGTTGGCATTTTTCATTGAAGGTTAC
TATATAACCTTCAGTAACTTTATTGGACTGCTTCTTTGTACATCTGGTTA
AAATCGAGATGCTGGAAGTGCTGATTTTGATTGAAAGTTGCCCACCTTCA
TGCATCTTCACAGAATTTAACGGGGTCGGAAAGTGAAGACCGTTTTAATC
CTCATGCACCTTCACCAGATTTGAAAAAGCGGTCCAACATAGATACTAAC
TTTCATCCGCCTCTATTTGGTTTTTGTAGAATTCATAATTAGCTGCCTTG
AGACCTTCATCCATTTTTGGGATCCGTGAATAGCTGAGTTTGTGGCCTTC
AAATTTTTTGCTACCTTTCGCAATTAGCTGCCCTCATCGCCTTGCCGAAT
TTCCACTGCCTACTGTATATTTAAATTTCCTAAAAACATGAATCGATTTC
ACAAAAATTCGTTTTCCTTTCACCGTTATAGTATCGATAGAGGACACGGC
ATTAGACGTGAAACCGATGCCGAAAATGGTTGATCTACCTACCGAGTTAG
ATAATGTGTGAGCACATCGAAGAAATGTGGACCTCCGTTTGGTCGTCGTA
CTATTTTTCGGACTAGTAGTCATGGTATATTAGCCCAACCGCGATGGAAC
ACAGTCGCGAGGGTAAAGGACTAGTGTAGACCTCTTTCTATTGATCCAGC
GGATCTAACTACGTGAATGTTTCACCCCCCAGACGAATACGAATTCATCT
GAGAACCCGACCCTTGATTGTATTCTATTTGCCATACTTTGAAACGAAAA
TCGCAGGTACAGCAATAACAGCGGCAACAGCAAGCAGCAGGGTGGCGACG
GCGAAGCAGAACCTGGTGGAGGCGGCCGTTGGGAAAACGACATGTACGAA
AGCACTCAGCAATCCCATCAGAGGGATGGCGGTTTCAACAACGCAGGCGG
CAACCAGTGGGGTGGCAACCGCCAAGGAAGGGGGGGCGGCGGGAGGGGAG
GACGTGGACGAAATTATGGTTTCGGTGGTGGGGACCGTTCTGGGGACGGG
TTCTCGCGAGAGGGCGGCGGGGGTGGCGCCAGACGGTGCGTGTCGTATGT
GCCGTCCTGGATCGTAGAAATAGATTTGAGGTTTCAGTTTTTTTGGCCTC
GTCAAATTCATGACTGCATCTGCAAATTTTGGAACAAACTGCTGTGAGGA
TGTGGTCACGTGTTAATCTCACCGTACGTGGTGAAATTATCGCCGTTGCT
TGTTACCAGGTGAATTTTAAGCAGCGTACACGAGGAGGTTCACTTTTTTA
TAGTTTTGTAGGTGTGTTCATTTAAGGGTGTTGCACATATGGTGGATGGG
ATACGAAATAATCGATATGCAGTTGTTCTTGCGTCTATGCCCGTGCAAGT
AATATTTCACTGGCAACTTGAAGATGTCTGTGTTCGCTTTTTTTTTCTCA
ATAATGTAAGTTGGCCCAATTTTCTCAGACTCACTGTAACAACGAAGGCG
CATGAGCGAGAAATTTTGACAATTGTTTTGACGGTACAAGAGGTGAAGGA
GCAGGGTCTTCATGTGAACGCATGAGGAAACGAAGTACTGCTTCGCCGAG
CACAAGAGTTGTTAATAAGTCAGTCCATTTGCACATTTGGTAAATCTGAG
ACGCTCACGAATAATTCCATACCGATAGCAAGCTGCAGCCAGCATAGCGA
GTCTGTGAGTCGAAGACAAACACAAATTGCACAGGAGTCACCGCTTTTCT
AATATCATACCCTTGTAATGGCACAGGCTTAGGTTATGATTGTTTTGGAT
CTTGTTCATCACTCTCAACTCGAGTTACTTCATAAACACGGAATCAATGA
TAAGATTTTCCTACTGAAAAAAACGAAGAAAAAGTGGTCGTATCATCTAG
TGGTACTTGTTGGATTTCATCAAACGCACAAAGTACTGCTCGGTGTCTTC
ACTTGAGTTGACCTGTCGAAATCCACCAGACATATTGTAAGGTGACGTAG
TTGTGGTGAATGCAGGATGTGCCCCCGTAGCCCGCGGTTGGTCCTTGATG
AAGTCACGATGTCTCGCACCGCTCGAGAAATAGACACCGTGTCCATCGGT
GGAGTAACTGTTCCGAAACGGCTATCATGACCACCATTATCACTCACCTC
GTTGAATAATGCTGATGATGGCGATAGGGATTATCGTGGCGGTGGCTACG
GCAGGGGCCAGTACTCGGACAACAACCAATCTAACCAGAGTAACGGCCAA
GATAACAATTGGGGGAACACTGCCGGTGGTTCGGGAGTTGCAGATAATTG
GGCCGGTGGTGGTGAACGAGATCCCGGAGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1353:19316..23749-

>mRNA_H-paniculata_contig1353.2186.1 ID=mRNA_H-paniculata_contig1353.2186.1|Name=mRNA_H-paniculata_contig1353.2186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig1353:19316..23749- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAGAAGAAGAAGTGGCGGCTACGGCAGTGGCAGCTACGGTAGCGG
TGGCAACAGATGGACAGAAGAAGAAGTGGCGGCTACGGCAGTGGCAGCTA
CGGTAGCGGTGGCAACAGGTACAGCAATAACAGCGGCAACAGCAAGCAGC
AGGGTGGCGACGGCGAAGCAGAACCTGGTGGAGGCGGCCGTTGGGAAAAC
GACATGTACGAAAGCACTCAGCAATCCCATCAGAGGGATGGCGGTTTCAA
CAACGCAGGCGGCAACCAGTGGGGTGGCAACCGCCAAGGAAGGGGGGGCG
GCGGGAGGGGAGGACGTGGACGAAATTATGGTTTCGGTGGTGGGGACCGT
TCTGGGGACGGGTTCTCGCGAGAGGGCGGCGGGGGTGGCGCCAGACGGTA
CAGCAATAACAGCGGCAACAGCAAGCAGCAGGGTGGCGACGGCGAAGCAG
AACCTGGTGGAGGCGGCCGTTGGGAAAACGACATGTACGAAAGCACTCAG
CAATCCCATCAGAGGGATGGCGGTTTCAACAACGCAGGCGGCAACCAGTG
GGGTGGCAACCGCCAAGGAAGGGGGGGCGGCGGGAGGGGAGGACGTGGAC
GAAATTATGGTTTCGGTGGTGGGGACCGTTCTGGGGACGGGTTCTCGCGA
GAGGGCGGCGGGGGTGGCGCCAGACGGGATTATCGTGGCGGTGGCTACGG
CAGGGGCCAGTACTCGGACAACAACCAATCTAACCAGAGTAACGGCCAAG
ATAACAATTGGGGGAACACTGCCGGTGGTTCGGGAGTTGCAGATAATTGG
GCCGGTGGTGGTGAACGAGATCCCGGAGCGGGGGGATTATCGTGGCGGTG
GCTACGGCAGGGGCCAGTACTCGGACAACAACCAATCTAACCAGAGTAAC
GGCCAAGATAACAATTGGGGGAACACTGCCGGTGGTTCGGGAGTTGCAGA
TAATTGGGCCGGTGGTGGTGAACGAGATCCCGGAGCGGGG
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