mRNA_H-paniculata_contig1352.2183.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1352.2183.1 vs. uniprot
Match: D7FSY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY9_ECTSI) HSP 1 Score: 385 bits (988), Expect = 1.110e-123 Identity = 192/298 (64.43%), Postives = 224/298 (75.17%), Query Frame = 1
Query: 25 QAGRAAWADDGRVLFLLNHEGNLLKIRVSPSSELTLLASQDFVGGASPTTLQLTPDGDWVLIAAPLVGLCLLPTSTLKMERAVMYGENLGNRGQKTRFWGTAILGDMHGRANGGGSGERRLSIIGNPAKSRDEKTDLFFYDQRGGQPERIDTPRREGGLWLACSPLRPILLFVCPCGILYIREQVLKTDFPGPWYPSGYILIDNNVEYLEAEDELDTVVTSGPNGEVLSKSQAHEVLVPWQHEVVTDKGGDGSLSGGGAAAVGNGEESVDVENGAATSGIWAGASPDELRWVPQDEES 918
QAGR AW DDG FLLNHEGNLLKI+ L+LLA D GGASP TLQL PDGD VLIA GLCL+PT L + +A +GENLG RG K R+WG A LGD+HGR + G S +RRL+I+GNP+++RD+KTDLFF+ GGQPERIDTPRREG L LACSP RP+L+F+CP G +Y +E+VLKTDFPGPWYPSGY+LIDNNV+YLEAEDELDTVV +GP GEVLSK+QAHEV+VPWQHE V + D SL G EE VDVE G T +WA A P ELRWVP+ E+S
Sbjct: 248 QAGRVAWCDDGETFFLLNHEGNLLKIKTHCDGSLSLLARADPQGGASPATLQLAPDGDKVLIATATRGLCLVPTEDLDLVKAEPFGENLGPRGAKARYWGAATLGDIHGRGHDG-SRKRRLTIVGNPSRTRDDKTDLFFFGLGGGQPERIDTPRREGVLALACSPRRPLLMFLCPTGEVYFKEEVLKTDFPGPWYPSGYVLIDNNVDYLEAEDELDTVVMTGPGGEVLSKTQAHEVVVPWQHEAVAQE--DSSL--------GEKEEPVDVEGGGDTE-LWADAQPGELRWVPEREDS 533
BLAST of mRNA_H-paniculata_contig1352.2183.1 vs. uniprot
Match: A0A6H5K8W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W8_9PHAE) HSP 1 Score: 367 bits (943), Expect = 8.400e-114 Identity = 189/320 (59.06%), Postives = 222/320 (69.38%), Query Frame = 1
Query: 25 QAGRAAWADDGRVLFLLNHEG----------------------NLLKIRVSPSSELTLLASQDFVGGASPTTLQLTPDGDWVLIAAPLVGLCLLPTSTLKMERAVMYGENLGNRGQKTRFWGTAILGDMHGRANGGGSGERRLSIIGNPAKSRDEKTDLFFYDQRGGQPERIDTPRREGGLWLACSPLRPILLFVCPCGILYIREQVLKTDFPGPWYPSGYILIDNNVEYLEAEDELDTVVTSGPNGEVLSKSQAHEVLVPWQHEVVTDKGGDGSLSGGGAAAVGNGEESVDVENGAATSGIWAGASPDELRWVPQDEES 918
QAGR AW DDG FLLNHEG NLLKI+ L+LLA D GGASP TLQL PDGD VLIA GLCL+PT L + +A +GENLG RG K R+WG A LG +HGR + G S +RRL+I+GNP+++RD+KTDLFF+ GGQPERIDTPRREG L LACSP RP+L+F+CP G +Y +E+VLKTDFPGPWYPSGY+LIDNNV+YLEAEDELDTVV +GP GEVLSK+QAHEV+VPWQHE V + D SL G EE VDVE G T +WA P ELRW+P+ E+S
Sbjct: 568 QAGRVAWCDDGETFFLLNHEGGAWSLKLLAVAVAALNDVVVVGNLLKIKTQSDGSLSLLARADPQGGASPATLQLAPDGDKVLIATATRGLCLVPTEDLDLVKAEPFGENLGPRGAKARYWGAATLGVIHGRGHDG-SRKRRLTIVGNPSRTRDDKTDLFFFGLGGGQPERIDTPRREGVLALACSPWRPLLMFLCPTGEVYFKEEVLKTDFPGPWYPSGYVLIDNNVDYLEAEDELDTVVMTGPGGEVLSKTQAHEVVVPWQHEAVAQE--DSSL--------GEKEEPVDVEGGEDTE-LWADTQPGELRWIPEREDS 875
BLAST of mRNA_H-paniculata_contig1352.2183.1 vs. uniprot
Match: A0A7S2L2T5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L2T5_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.880e-6 Identity = 55/191 (28.80%), Postives = 86/191 (45.03%), Query Frame = 1
Query: 163 SPTTLQLTPDGDWVLIAAPLVGLCLLPTSTLKMERAVMYGENLGNRGQKTRFWGTAILGDMHGRA--NGGGSGERRLSIIGNPAKSRD--EKTD-LFFYDQRGGQPE----RIDTPRREGGLWLAC---------SPLRPILLFVCPCGILYIREQVLKTDFPGPWYPSGYILIDNNVEYLEAEDELDTVV 681
S L + P+G VL A+ G+ + S L ++ ++GE GQ + W A + G+ ++G P R+ E D + F+D G + + I TP GL C +P R LL G + L+++FPG YP GYI+I++NVEY+E E+E+D V+
Sbjct: 21 SVEALSVHPNGKHVLAASSKGGIRMYDASNLNLQ--TVFGEGFALHGQLVQ-WQECFFVKSPKLAVIDNDGNDAFTTFVVGVPHSYREPLEMVDKIHFWDVNGLEKKLPTTTIQTPSAGVGLSSICWINAKRDSDAPGRTRLLIAEMNGQCSELNETLRSNFPGRMYPPGYIVINDNVEYIEDENEVDFVL 208
BLAST of mRNA_H-paniculata_contig1352.2183.1 vs. uniprot
Match: A0A7S2GJU8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJU8_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.930e-6 Identity = 63/250 (25.20%), Postives = 98/250 (39.20%), Query Frame = 1
Query: 4 SKHRVPTQAGRAAWADDGRVLFLLNHEGNLLKIRVSPSSELT-----------LLASQDFVGGASPTTLQ-------LTPDGDWVLIAAPLVGLCLLPTSTLKMERAVMYGENLGNR-----GQKTRFWGTAILGDMHGRANGGGSGERRLSIIGNPAKSRDEKTDLFFYDQRGGQPERIDTPRREGGLWLACSPLR--PILLFVCPCGILYIREQVLKTDFPGPWYPSGYILIDNNVEYLEAEDELDTV 678
SK +P+ + + +GR+L IR+ + ELT LL S+ GA T + G+ L+ L L P + K E Y +G+ + + F GTA G GGG ++ + G ++ G + L+ C PLR P +L + G Y+ + ++FPGP YP G++++DNN Y+EAEDE D V
Sbjct: 13 SKQPLPSSVPQLSLIQEGRLLVTTTRSC----IRILETCELTCVQEFGQSIAKLLGSRCLWSGAGVVTSHCCRSDGAVHKSGEGELLVGVLKD-TLNPFKS-KREEGHFYTWEIGHLTGHCDARASSFKGTAHTDQPTGGVGGGGGRQQAHATRGRTNTRNAVASEKLVQGHEAGMVMHAAPDQNLTQLF--CHPLRSKPAVLALSALGDAYMVCVNMTSNFPGPMYPPGFVIVDNNRPYIEAEDEFDVV 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1352.2183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1352.2183.1 >prot_H-paniculata_contig1352.2183.1 ID=prot_H-paniculata_contig1352.2183.1|Name=mRNA_H-paniculata_contig1352.2183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=310bp NSKHRVPTQAGRAAWADDGRVLFLLNHEGNLLKIRVSPSSELTLLASQDFback to top mRNA from alignment at H-paniculata_contig1352:12015..23527+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1352.2183.1 ID=mRNA_H-paniculata_contig1352.2183.1|Name=mRNA_H-paniculata_contig1352.2183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11513bp|location=Sequence derived from alignment at H-paniculata_contig1352:12015..23527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1352:12015..23527+ >mRNA_H-paniculata_contig1352.2183.1 ID=mRNA_H-paniculata_contig1352.2183.1|Name=mRNA_H-paniculata_contig1352.2183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at H-paniculata_contig1352:12015..23527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |