prot_H-paniculata_contig1352.2181.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1352.2181.1
Unique Nameprot_H-paniculata_contig1352.2181.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length443
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1352.2181.1 vs. uniprot
Match: A0A6H5K8W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W8_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 6.800e-59
Identity = 126/262 (48.09%), Postives = 158/262 (60.31%), Query Frame = 0 
Query:    2 AMDHLAPGEEPAVFARKAGVVASKVGYLDVLDSANDWEELEAAHGDDANPLTCEFNHRGTHVAIGDDAGRVDLWSVTPIRLLVKSLVLPHAELPLSADEVDFYDEDYNEIVTPPEQLQPESSADGFGXXXXXXXXXXXXXXXXSGSASVPASAPRGGRAGSGATVGREDLPPGGHGWATVCVYWSRCSRYLVAAYVQKRRT-----ELPLPGLVVFWNVTDGQVEGYLRLRSRPVHVTINPVDTRRCTACCVDGASFLLDFP 258
            A + +APGEE  VF+R AGVVASKV Y+DVLD ANDW+ LE  H +DA PLTC+FN RGTH A+GD+AGRVDLWS  PIR+ VKSL L H               D  + + PP  L  +S+                     +  A+  AS   G RA   A   RED+    HGW+T  V WSRCSRY+VAAYVQKR+T     E+ LPGLV+ W++ + +VEG LRL SR VH +++P + R  + CC DG+SFL DFP
Sbjct:   19 AAEPVAPGEEQVVFSRTAGVVASKVSYMDVLDPANDWQVLENPHENDAAPLTCQFNRRGTHFAVGDEAGRVDLWSFVPIRMYVKSLELSH---------------DLLDKIFPPATLSADSAV--------------------TTPAAAVASEKSGARA---AAKDREDVD---HGWSTTSVGWSRCSRYMVAAYVQKRKTWPDGEEVLLPGLVLLWDIVEEEVEGCLRLPSRIVHASLSPSNPRCGSVCCADGSSFLADFP 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1352.2181.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8W8_9PHAE6.800e-5948.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 309..443
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 290..308
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..289
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 31..258

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1352contigH-paniculata_contig1352:6258..10877 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1352.2181.1mRNA_H-paniculata_contig1352.2181.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1352 2137..10877 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1352.2181.1 ID=prot_H-paniculata_contig1352.2181.1|Name=mRNA_H-paniculata_contig1352.2181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=443bp
MAMDHLAPGEEPAVFARKAGVVASKVGYLDVLDSANDWEELEAAHGDDAN
PLTCEFNHRGTHVAIGDDAGRVDLWSVTPIRLLVKSLVLPHAELPLSADE
VDFYDEDYNEIVTPPEQLQPESSADGFGDGFGGGGGAGGGGSIRSGSASV
PASAPRGGRAGSGATVGREDLPPGGHGWATVCVYWSRCSRYLVAAYVQKR
RTELPLPGLVVFWNVTDGQVEGYLRLRSRPVHVTINPVDTRRCTACCVDG
ASFLLDFPCPSWSSPSSCRTPATTSMPPPPQQQQEQRSPLYGLVAAAAAA
AVGARAAATMTASSSKISPAAGVGRSEAESRGGHCSEGDDRSNTSTRDAT
EVTAGGADVAETARKKRRSNENGSIAAEDGFASSHRACYSIAGSGGKGLG
GSERGLAAAAAGREERGWGGRQEQRGVRGNVEKAGMAVDGAGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf