mRNA_H-paniculata_contig13514.2178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13514.2178.1
Unique NamemRNA_H-paniculata_contig13514.2178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13514.2178.1 vs. uniprot
Match: D8LCU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU0_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 3.130e-35
Identity = 69/108 (63.89%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:   25 NSECVSKFLQTAKIIARRSRKPPKDGKAAAVASEREVAAGGAVAPERGEEATPMMFITSPLNHAFLRKNMGLRRTPYQLGFKSKFATPMSLYTNYPSEELGPWVHEEE 348
            N EC+ KFL+TA +IARR R        AAVA +      G    E     TPMMFITSPLNHA+LR+NMGLRRTPYQL FKSKFATPMSLYTNYPS+ LG WV EEE
Sbjct:   69 NPECIGKFLETADVIARRPR--------AAVAGD------GDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYQLAFKSKFATPMSLYTNYPSDALGGWVEEEE 162
[Close]
BLAST of mRNA_H-paniculata_contig13514.2178.1 vs. uniprot
Match: A0A835ZDP6_9STRA (Putative N6-adenine methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.560e-19
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:   25 NSECVSKFLQTAKIIARRSRKPPKDGKAAAVASEREVAAGGAVAPERGEEATPMMFITSPLNHAFLRKNMGLRRTPYQLGFKSKFATPMSLYTNYPSEELGPWVHEE-EGED 357
            N +CV++F QT +++AR                   V      AP+   E TPMMF+TSP NHA L ++MG+RRTP+Q+ F+SKFATP++++ NY S  LG +VHE+ E ED
Sbjct:   63 NPQCVTEFFQTMQLLAR-------------------VPWSADAAPDA--EVTPMMFVTSPRNHAQLLRDMGMRRTPFQVKFQSKFATPIAIFLNYRSTRLGDFVHEDPESED 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13514.2178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCU0_ECTSI3.130e-3563.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDP6_9STRA1.560e-1943.75Putative N6-adenine methyltransferase-domain-conta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13514contigH-paniculata_contig13514:179..4546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue4.2e-27
Seed eggNOG ortholog2880.D8LCU0
Preferred nameEFM5
KEGG koko:K03953,ko:K16546
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG3350@1,KOG3350@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-07_006880.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036
Exons2
Model size360
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.5831134-CDS-H-paniculata_contig13514:178..3771622929069.5831134-CDS-H-paniculata_contig13514:178..377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13514 179..377 +
1691480719.9795945-CDS-H-paniculata_contig13514:178..3771691480719.9795945-CDS-H-paniculata_contig13514:178..377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13514 179..377 +
1622929069.5997012-CDS-H-paniculata_contig13514:4385..45461622929069.5997012-CDS-H-paniculata_contig13514:4385..4546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13514 4386..4546 +
1691480719.9933748-CDS-H-paniculata_contig13514:4385..45461691480719.9933748-CDS-H-paniculata_contig13514:4385..4546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13514 4386..4546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13514.2178.1prot_H-paniculata_contig13514.2178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13514 179..4546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13514.2178.1

>prot_H-paniculata_contig13514.2178.1 ID=prot_H-paniculata_contig13514.2178.1|Name=mRNA_H-paniculata_contig13514.2178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MNEYTIKQNSECVSKFLQTAKIIARRSRKPPKDGKAAAVASEREVAAGGA
VAPERGEEATPMMFITSPLNHAFLRKNMGLRRTPYQLGFKSKFATPMSLY
TNYPSEELGPWVHEEEGED*
back to top

mRNA from alignment at H-paniculata_contig13514:179..4546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13514.2178.1 ID=mRNA_H-paniculata_contig13514.2178.1|Name=mRNA_H-paniculata_contig13514.2178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4368bp|location=Sequence derived from alignment at H-paniculata_contig13514:179..4546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGAATATACAATAAAACAGAACTCGGAGTGCGTGAGCAAATTTCT
GCAGACGGCGAAGATAATCGCCAGACGATCGCGAAAACCACCTAAAGATG
GAAAAGCAGCAGCAGTAGCATCAGAGAGAGAAGTAGCAGCAGGGGGAGCA
GTAGCACCAGAGAGAGGAGAAGAGGCCACACCGATGATGTTTATTACAAG
TGAGTATCGCAGTTGTCTCCATTTTTTGGTTAATTTTGTTTTGGTCATTA
TCCTTGCATATTGTCGTCCTCATCATCACCACCACGTTGACGTATCGAGT
AATAATATGCTTGAGTATGCATGCCCTGGCAGTGATGAGGTATCATGTGC
CTAGCCTATATAAGGGTACATAGTGTGACTTATTGGCGGGGGAAAATTCC
TTGCGGCGCCACTTAGTTCGTTTTCGTCGTTCTCCATGGCTGAAATATTT
GGATACTTCGAATAGGAGCATTCGCAACGACGAAGAAGAAATTTATTTAC
CTGAAGGCTGATTCAGCAATGAGCACGTTCATCCTATGTGTCCCGGACCA
TCTATGATTCGATCGGTCCTACTGGCTAATGAATAGTAGAATGGATATAC
GGGGACCCGTCAACACTTTATTTTACGTGCTCGCGCATTCACAAACTCAG
GCGAATACGTTATTTTTTGGTTTTCGTATTCGGCCGGGGGGCTGAGATAT
TTCACCCCCCGGAAGAATAGGAATGGAGCATTCTCAACTATCTCGAACCA
TCGCAATTTGTCTTGGGTAAACATGTTTTTATTTGTTTACAAGTCTATGA
GCTCTACAAATGGTCACCAGGTGGTCGTATACTCGGCGAACGGTCACACA
TGCAGGTCCTGTTTATTTTCCGGATTGTGCTGTACAGATTGGATTCTCTG
TCTGCCGGAGCTTTTCGATGCTCAATGGTATATCGAGGACACTGCATATT
ATTCGCGTCACATAGACATCTTCCCCAACTCAAACAGATACAGTACTCAT
TCCAGATTTCTCGTACTTGTTCGTGTCTTGTATCGTATTTGTTCAGGGCG
TGAACTATTTGTATGTTGAATGAATATCGTAAAGTCCGGAGTGGGGTACC
GATGTATCAATTGTGGGGTGGGAACGCAGTTCAAATGCCAGTGACTGATT
ATCTAGACAAGTAACTACTAACGAAGAAAAAATATTTTGTCGATGGATTG
GCGAGGTCTTCTTGCTACCACGCGAGGACTCCTTTCTCGAAATACAGTAC
AAGCTCGGTAATAAGAAACTCTTATTTCGGGTGACGCTCAAAATCTTGTT
TTGACGAGAATCACGACAGTACGGTCTCTCACTTTTATGTAGGAATTTAG
TATAGCGCCATAATTTGAGCCCTATTTCTTAGGCCAGATTTCGTATGGTT
TGGCAAACAGTGAGCCTCAGTATCTTATAAGTTAATTTCTTACAATCAGG
CCGGTACTGTGGTCAATCGCGTTTGATATTTTTTAGTTCGCATCCCGGTG
TGATACCTCCGGGTTTTAATTCACACGTTGTTTTCAATTGCTGCTACCTC
AAAAATGTCAAATGTGTGGCTTGCTAGGGGATAAGCCCTTGCCTACGAAT
TACCAAAAAAAAATCCAGACGGTCGGTCGCAGGGGGGTGAAAATGGTTTG
TAGGAAAACGTTGGATAATATACGGATCTATCTCTCTCTGTATATGTATA
CGTGTGTGTGAAAAGCGTGTTCTGTCCTCTACAGAACCTAGTGGGAGTTA
TTCCCTTCTATCGGGTACTCTCCACGTCACCCCCCCTTGATCAGGGTCTT
CGGTATGTTGCAAATGTCTACTAGGAGTGACCGGTTTCGCCGGCTGGTGG
TGAGGACGTTCACTCCTTTTTTGTTCACAATCATTCCTCCTATTGCGGTT
GTCTTACTAGAAGTTTGTAGGAGATTTTTGTCCGTATTCCCCCACCTTTT
TTGCGGCCTGCTTAAGTCGCCAATTTCTTTCACAGTGATCATGGTCGGAT
TCAAACTCATGACTTTCAGATCCCGTGGTCAGGGGTCCTACCGGCGACGC
CATTGTGGAAAGGGTGTTCTCTCCTTTACAGAATCTAGTGGGAATTATTT
CCTTCTATAGAGTACTCTTCACACACACACACACACACATATATATACAT
GTGAGTTTCAGAGTGTGCTGAATGGCACAGAGAGTCAATTACGTGTTCTC
CCCATGTTTCTGTCATTTGTTTTCATAGTGTTCGCCGCAGTCGTAGAGGA
TCCAGGGCACACGTCCCAAGTATTCGTAATTGTCCGGGGTGTGTGTACAA
ATGGTTGAACGAGGGAATTGAGGATTATTTTTAGGAACAGCGCGCGCAGC
CTGTACTTCCTCCGTGCTGCCATAGGTAAAGCTGGTTGAGTTTATAGAGG
CATGTAACCATCTCCGATTTTTTTTTTCTGTTAGTTGTAATCCTACTTTT
TGGGGGGGTTGATCCCCAAATTTTCACGGAAACTGGCGAAATCCATCAGG
GGCACGCGCGGCACAAAAGTAAAATGTCGGCCGATCAAAGGCCGTGTTTA
GCCCCTTGGTCGTATTTTCCCGATGGAAAGACGTGAAGAACGAAAAAAAG
AAGAGGAGATGGTCAACATTAACCCAACCTTGAGCCAGTAATTCTGATAC
GCGAATCGGATTGCACTTCGGGAATAGCGCATATGGGTCTATCAGACTCT
AGCTTTCCAACGATCCCAATCGTATCCTCTGAACAGTCTTAGATTTGGAG
ACATGATCTGCCAAACACAACGGACTTACTTATGGCACAGAGAAAGGAAG
TACGTAGTCCTAGTCCTGACCTTCAGCAGCGCCCGCAGCCTGCACTTCGG
CTACAAACCTTTCACCCCTCGGACAAATACGACTAATGGGCGTATTCGCT
ATAGAAGTTAAAAAGTATTCGCATAAGTTTCAGAGTGAGCTCGTGTAGTC
AATGTGCCCTGGACCATCCATGAATGCGAATATTACTCGTAACTCGAATG
GACAGGCGTGGATACTTTTTATGTGTCCGCCCATTCTGAAACTCGGCGAG
TACTTTCAATGTTCGTGGCGAATACGCCAATTATTCGTATTTGTCCATGG
GGTGAAAAAACTAAACATTTTGGACCATGGTCGTTTTTTGGCTCTGAACG
ATTTTGGTGCGGAAACGCAACAACGTTTGATATCGCATGCCCTGGTTTTG
TTTTTCCGACTCGATTTCTGGACATTGATGATGCTTGCTCCATGACACCG
ATATCGTTAAAAAGATCTCGTTGAGATTTTTCGATACATCTGCTGTTTGG
GCGGTGCAGACAAGGCTCTTATTTGCTTTCTCGAGAAAATCGGGTTTGGA
AACTAACACCAGGGGGTGCGCTATCGCAGGGTGTTACAGTAGTAGAGCTA
ATAGACTACTACGCTTACGCGTACATGAAGCCGATCGAGTGATGAAAAGT
CAGCTAAACATGGATTCGATGTACGGCTGAGTCAGGTGGTTGATACAGCG
ATGGGGGTAGGAACACACACAGACATTATTGCGCTTTTAACTGCACCGTG
GTAATCCATTTCGTCTGTACCCTGTGTTTACCGCGATTGCTGCAAAGCAG
TGAAGGGGGCACAAGATACGTACCCTCAGTTTTCGTTGGATCGATACTAA
TACCCCGTATTATTTCTCCACCCTTCTGGTGTCTAAGTTGTTCACTATTC
CTAATTTGCCCTCTTCCAAAGCCTGTCCCCATATTACCCTTTTTGTGAAA
CCCCTCCGCGATCAAATGTCTCGCGTTTTGCTTCGACAGGTGTTTGTCAC
ATTTTCTATTCCTACCTATTTCTGCGGTCACGTTTTGTGCTATTCCCGTT
ATGTCATGTTCCAAACCCTGTCCCCATAGCCCCATAGTACCCTTCTTTTG
GTGCCCCCCCCCCCCACACACACACACCAAAACGCGAGCGTTTTGTTTCG
ATAGATATTTTTCACATTGTCTATTCCCACATTTCTTTGCCGTCACGTTT
TGTGCTATTCCCAATATGCTATTTTCCAACCCCTGCTCCCATGTTGCCCT
TGATATATTGCCCCCCTCCCGCCTTCCCCCTCACCCTCCTACGATTTATT
TTGAGTAGATCGAATTTTTTGTAACTTTTGTGATCCCCCCGGCCGCCACC
GGCTGTCTTCAAGTCTCTCCCGTTGACCCTCGCAATGCACCTCAAACGAT
TCATCAGGTCCTCTCAACCACGCCTTCTTACGGAAGAATATGGGGTTGCG
CAGGACGCCGTACCAGCTAGGTTTTAAGAGCAAGTTCGCGACGCCGATGT
CTCTCTACACGAATTATCCCAGCGAGGAGTTGGGGCCATGGGTACACGAA
GAGGAGGGCGAAGATTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13514:179..4546+

>mRNA_H-paniculata_contig13514.2178.1 ID=mRNA_H-paniculata_contig13514.2178.1|Name=mRNA_H-paniculata_contig13514.2178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig13514:179..4546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGAATATACAATAAAACAGAACTCGGAGTGCGTGAGCAAATTTCT
GCAGACGGCGAAGATAATCGCCAGACGATCGCGAAAACCACCTAAAGATG
GAAAAGCAGCAGCAGTAGCATCAGAGAGAGAAGTAGCAGCAGGGGGAGCA
GTAGCACCAGAGAGAGGAGAAGAGGCCACACCGATGATGTTTATTACAAA
TGAACGAATATACAATAAAACAGAACTCGGAGTGCGTGAGCAAATTTCTG
CAGACGGCGAAGATAATCGCCAGACGATCGCGAAAACCACCTAAAGATGG
AAAAGCAGCAGCAGTAGCATCAGAGAGAGAAGTAGCAGCAGGGGGAGCAG
TAGCACCAGAGAGAGGAGAAGAGGCCACACCGATGATGTTTATTACAAGT
CCTCTCAACCACGCCTTCTTACGGAAGAATATGGGGTTGCGCAGGACGCC
GTACCAGCTAGGTTTTAAGAGCAAGTTCGCGACGCCGATGTCTCTCTACA
CGAATTATCCCAGCGAGGAGTTGGGGCCATGGGTACACGAAGAGGAGGGC
GAAGATTGAGTCCTCTCAACCACGCCTTCTTACGGAAGAATATGGGGTTG
CGCAGGACGCCGTACCAGCTAGGTTTTAAGAGCAAGTTCGCGACGCCGAT
GTCTCTCTACACGAATTATCCCAGCGAGGAGTTGGGGCCATGGGTACACG
AAGAGGAGGGCGAAGATTGA
back to top