mRNA_H-paniculata_contig13512.2176.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13512.2176.1
Unique NamemRNA_H-paniculata_contig13512.2176.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13512.2176.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 7.450e-5
Identity = 24/64 (37.50%), Postives = 38/64 (59.38%), Query Frame = -2 
Query:  198 YLLANVEYIKFGPEFNRRLESIVWSRRVRRILFSNGNSRKQNSMFNQPIDGVGWPASLQQLTLG 389
            + + +V+ ++FG  F+  LE++ W RR++ I F         S FNQP++ + WP SLQ L LG
Sbjct:  109 FAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFL------YTSPFNQPLELIKWPESLQHLVLG 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13512.2176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH81_ECTSI7.450e-537.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13512contigH-paniculata_contig13512:4862..5287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13512.2176.1prot_H-paniculata_contig13512.2176.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13512 4907..5251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.4643676-UTR-H-paniculata_contig13512:4861..49061622929069.4643676-UTR-H-paniculata_contig13512:4861..4906Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13512 4862..4906 +
1691480719.9219823-UTR-H-paniculata_contig13512:4861..49061691480719.9219823-UTR-H-paniculata_contig13512:4861..4906Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13512 4862..4906 +
1622929069.4873683-UTR-H-paniculata_contig13512:5251..52871622929069.4873683-UTR-H-paniculata_contig13512:5251..5287Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13512 5252..5287 +
1691480719.946798-UTR-H-paniculata_contig13512:5251..52871691480719.946798-UTR-H-paniculata_contig13512:5251..5287Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13512 5252..5287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.4753833-CDS-H-paniculata_contig13512:4906..52511622929069.4753833-CDS-H-paniculata_contig13512:4906..5251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13512 4907..5251 +
1691480719.9345853-CDS-H-paniculata_contig13512:4906..52511691480719.9345853-CDS-H-paniculata_contig13512:4906..5251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13512 4907..5251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13512.2176.1

>prot_H-paniculata_contig13512.2176.1 ID=prot_H-paniculata_contig13512.2176.1|Name=mRNA_H-paniculata_contig13512.2176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MGWLNRSPNVNCCSEAGHTTPSMGWLKILPNTNCCSEAGHATPSMGWLKF
LPNVNCCSEAGHPTPSIGWLNMEFCFRLFPLLNKIRRTLRDHTMLSRRRL
NSGPNFIYSTFANR*
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mRNA from alignment at H-paniculata_contig13512:4862..5287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13512.2176.1 ID=mRNA_H-paniculata_contig13512.2176.1|Name=mRNA_H-paniculata_contig13512.2176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig13512:4862..5287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAACGCCAACTGTTGCAGCGAGGCAGGCCAAGCTACCCCCTCAATGGG
CTGGTTGAATAGATCTCCAAACGTCAACTGTTGCAGCGAGGCAGGCCATA
CTACCCCCTCAATGGGCTGGTTGAAGATTCTCCCGAACACCAACTGTTGC
AGCGAGGCAGGCCATGCTACCCCCTCAATGGGCTGGTTAAAGTTTCTCCC
CAACGTCAACTGTTGCAGCGAGGCAGGCCATCCTACCCCATCAATCGGCT
GGTTGAACATGGAGTTTTGCTTCCGACTGTTTCCGTTGCTAAACAAGATT
CGCCGAACTCTCCGGGACCATACTATGCTCTCCAGACGGCGGTTGAATTC
GGGCCCGAATTTTATATATTCTACATTCGCCAACAGATAGTTGTCAAAAG
ACATAAACTTGGCGCTAGCAGACACC
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Coding sequence (CDS) from alignment at H-paniculata_contig13512:4862..5287+

>mRNA_H-paniculata_contig13512.2176.1 ID=mRNA_H-paniculata_contig13512.2176.1|Name=mRNA_H-paniculata_contig13512.2176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig13512:4862..5287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTGGTTGAATAGATCTCCAAACGTCAACTGTTGCAGCGAGGCAGG
CCATACTACCCCCTCAATGGGCTGGTTGAAGATTCTCCCGAACACCAACT
GTTGCAGCGAGGCAGGCCATGCTACCCCCTCAATGGGCTGGTTAAAGTTT
CTCCCCAACGTCAACTGTTGCAGCGAGGCAGGCCATCCTACCCCATCAAT
CGGCTGGTTGAACATGGAGTTTTGCTTCCGACTGTTTCCGTTGCTAAACA
AGATTCGCCGAACTCTCCGGGACCATACTATGCTCTCCAGACGGCGGTTG
AATTCGGGCCCGAATTTTATATATTCTACATTCGCCAACAGATAGATGGG
CTGGTTGAATAGATCTCCAAACGTCAACTGTTGCAGCGAGGCAGGCCATA
CTACCCCCTCAATGGGCTGGTTGAAGATTCTCCCGAACACCAACTGTTGC
AGCGAGGCAGGCCATGCTACCCCCTCAATGGGCTGGTTAAAGTTTCTCCC
CAACGTCAACTGTTGCAGCGAGGCAGGCCATCCTACCCCATCAATCGGCT
GGTTGAACATGGAGTTTTGCTTCCGACTGTTTCCGTTGCTAAACAAGATT
CGCCGAACTCTCCGGGACCATACTATGCTCTCCAGACGGCGGTTGAATTC
GGGCCCGAATTTTATATATTCTACATTCGCCAACAGATAG
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