mRNA_H-paniculata_contig13503.2171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13503.2171.1
Unique NamemRNA_H-paniculata_contig13503.2171.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: D7FS04_ECTSI (Triose phosphate/phosphate translocator, non-green plastid, chloroplast, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS04_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.370e-19
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 2 
Query:    2 DILTLVPMAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVYLS 184
            D+  LVPM FLH VSHLTVVLGLGAG+VSF+ TVKAAEACFTA  S +F GQ +PLPVYL+
Sbjct:   79 DLAVLVPMGFLHAVSHLTVVLGLGAGAVSFLQTVKAAEACFTALLSYLFLGQTMPLPVYLT 139
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BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: A0A6H5KHZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHZ8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.080e-18
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 2 
Query:    2 DILTLVPMAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVYLS 184
            D+  LVPM FLH VSHLTVVLGLGAG+VSF+ TVKAAEACFTA  S +F GQ +PLPVYL+
Sbjct:  184 DLAVLVPMGFLHAVSHLTVVLGLGAGAVSFLQTVKAAEACFTALLSYLFLGQTMPLPVYLT 244
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BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: A0A836CHH7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.290e-12
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:    2 DILTLVPMAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVYLS 184
            +I TL P+   H +SHL+ V+GLGAGSVSF H VKAAE  FTA FS IF  Q  P+PVYLS
Sbjct:  146 NIKTLSPIGLCHAISHLSAVIGLGAGSVSFTHIVKAAEPFFTALFSAIFLKQYFPVPVYLS 206
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BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: A0A6H5KC08_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC08_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.030e-10
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:   20 PMAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVYLS 184
            P+A  HM+SH+  V+GLGAG+VSFVH VKAAE  FTA FS IF GQI    VYL+
Sbjct:  154 PIAACHMLSHVCAVIGLGAGAVSFVHIVKAAEPLFTALFSAIFLGQIFSPLVYLT 208
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BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: D7FK20_ECTSI (Glucose-6-phosphate/phosphate translocator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK20_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.780e-10
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:   20 PMAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVYLS 184
            P+A  HM+SH+  V+GLGAG+VSFVH VKAAE  FTA FS +F GQI    VYL+
Sbjct:  154 PIATCHMLSHVCAVIGLGAGAVSFVHIVKAAEPLFTALFSAVFLGQIFSPLVYLT 208
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BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: A0A835ZDI5_9STRA (Triose-phosphate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.050e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   11 TLVPMAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVYLS 184
            T+ P+A LH  SH++ V+GLGAG+V FVH VKA E  FTAA S +   + +PLPVY S
Sbjct:   85 TVFPLAALHTTSHISAVIGLGAGAVGFVHVVKALEPLFTAALSALLLQKFMPLPVYAS 142
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BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: A0A7R9YBK2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBK2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.660e-10
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 2 
Query:   14 LVPMAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVYLS 184
            L P+A LH  +HLT VL LGAG+VSF H VKAAE  F+A F+ +  GQ+   PVYL+
Sbjct:  148 LFPLASLHTGAHLTAVLSLGAGAVSFTHIVKAAEPAFSALFAAVLMGQVFAAPVYLT 204
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BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: D8LC95_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC95_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.440e-9
Identity = 33/54 (61.11%), Postives = 37/54 (68.52%), Query Frame = 2 
Query:   23 MAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVYLS 184
            +A LH V+H+T VL LGAG+VSF H VKAAE  FTA FS    GQ    PVYLS
Sbjct:  175 LAALHTVAHVTAVLSLGAGAVSFTHIVKAAEPVFTAGFSAALLGQTFAAPVYLS 228
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BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: A0A4D9DFS8_9STRA (TPT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DFS8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.060e-7
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:    2 DILTLVPMAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVYLS 184
            ++  ++P+A +H ++H+T V+ LGAG+VSF H +KAAE  FT+ FS +F  Q     VY S
Sbjct:  166 NVKNILPVAAMHAMAHITAVISLGAGAVSFTHIIKAAEPAFTSLFSALFLKQYFSPVVYAS 226
[Close]
BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Match: A0A6V1SC99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SC99_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 1.320e-6
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 2 
Query:    2 DILTLVPMAFLHMVSHLTVVLGLGAGSVSFVHTVKAAEACFTAAFSIIFQGQILPLPVY 178
            D+  L P A L+ +S LT  +GLGAG+VSFVH VK+AE  FTA F  +  GQ +   VY
Sbjct:  153 DLKALAPTAALNTLSLLTAAIGLGAGTVSFVHIVKSAEPLFTALFGALLLGQFMAPAVY 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13503.2171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FS04_ECTSI9.370e-1973.77Triose phosphate/phosphate translocator, non-green... [more]
A0A6H5KHZ8_9PHAE1.080e-1873.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CHH7_9STRA1.290e-1262.30Plastidic triose-phosphate/phosphate translocator ... [more]
A0A6H5KC08_9PHAE2.030e-1063.64TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK20_ECTSI2.780e-1061.82Glucose-6-phosphate/phosphate translocator n=1 Tax... [more]
A0A835ZDI5_9STRA5.050e-1055.17Triose-phosphate transporter family-domain-contain... [more]
A0A7R9YBK2_9STRA9.660e-1056.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D8LC95_ECTSI3.440e-961.11TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9DFS8_9STRA7.060e-744.26TPT domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6V1SC99_HETAK1.320e-650.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13503contigH-paniculata_contig13503:3643..4474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.031015-CDS-H-paniculata_contig13503:3642..37991622929069.031015-CDS-H-paniculata_contig13503:3642..3799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13503 3643..3799 +
1691480719.663947-CDS-H-paniculata_contig13503:3642..37991691480719.663947-CDS-H-paniculata_contig13503:3642..3799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13503 3643..3799 +
1622929069.0470676-CDS-H-paniculata_contig13503:4443..44721622929069.0470676-CDS-H-paniculata_contig13503:4443..4472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13503 4444..4472 +
1691480719.6823652-CDS-H-paniculata_contig13503:4443..44721691480719.6823652-CDS-H-paniculata_contig13503:4443..4472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13503 4444..4472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13503.2171.1prot_H-paniculata_contig13503.2171.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13503 3643..4472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13503.2171.1

>prot_H-paniculata_contig13503.2171.1 ID=prot_H-paniculata_contig13503.2171.1|Name=mRNA_H-paniculata_contig13503.2171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
GYIDASSHGVSAHGVTPYCGARTWGRVRLVCAHRESGGGVLHGCILHHFS
RPDPASAGVPVA
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mRNA from alignment at H-paniculata_contig13503:3643..4474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13503.2171.1 ID=mRNA_H-paniculata_contig13503.2171.1|Name=mRNA_H-paniculata_contig13503.2171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=832bp|location=Sequence derived from alignment at H-paniculata_contig13503:3643..4474+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATATATTGACGCTAGTTCCCATGGCGTTTCTGCACATGGTGTCACACC
TTACTGTGGTGCTAGGACTTGGGGCCGGGTCCGTCTCGTTTGTGCACACC
GTGAAAGCGGCGGAGGCGTGCTTCACGGCTGCATTCTCCATCATTTTTCA
AGGCCAGGTGCGGACGGTGTATCTCTCGTTTGACGGATTGATTGTTGCGT
CTGGCATTGAAAACAGCGGCACTCACGGTACGGTGTAGTGGTCTGTTACG
TCTAGAGTCGTGGCTGACGCACTTAGGGGACGGAGAGCGCGCAAAACCAG
ATCATACCGCATCGAAAGCATAATTGATACCACACATGTGTGTGCGCGCT
GTGGTGCGTCCCGAACTCTCCTGCGTGTGGTGCTATGGTATCAAAAGCAA
CATTTCAAAGTCGAGCGTTTTTGTGCCATGTACCCCCCTTAGTGAGCTAA
TTTTGCCGATTAAGTGCATACAGCTCAACTTTGAAGCGAGCTGGTATGAG
AATCTCGAGGAGGTGAAATGGAAGGTTTTTTATTTCAAGGGTGTCAGTCA
GTTGTTCGTATTAAGACTATTTTATCCATACCTACAGTGCACATGAAAGT
GATACAGTGATACCCTCTTGTGAACGTTGCCGTAACTCATGTCGTGCCTG
GTCGAAGAGGCGCGAGAAGTCCTGGTACTTTTCATGATGGAGTCAAAATG
TATGTCATATTAACAGAATCTTGTCGATCTGTAATCCCCCCCCCGATCGC
TCATCAATTCCGATCACGTCGCGTCAACTACCTCCTCGTCCGATCCTCCA
GATCCTGCCTCTGCCGGTGTACCTGTCGCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13503:3643..4474+

>mRNA_H-paniculata_contig13503.2171.1 ID=mRNA_H-paniculata_contig13503.2171.1|Name=mRNA_H-paniculata_contig13503.2171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig13503:3643..4474+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATATATTGACGCTAGTTCCCATGGCGTTTCTGCACATGGTGTCACACC
TTACTGTGGTGCTAGGACTTGGGGCCGGGTCCGTCTCGTTTGTGCACACC
GTGAAAGCGGCGGAGGCGTGCTTCACGGCTGCATTCTCCATCATTTTTCA
AGGCCAGGGATATATTGACGCTAGTTCCCATGGCGTTTCTGCACATGGTG
TCACACCTTACTGTGGTGCTAGGACTTGGGGCCGGGTCCGTCTCGTTTGT
GCACACCGTGAAAGCGGCGGAGGCGTGCTTCACGGCTGCATTCTCCATCA
TTTTTCAAGGCCAGATCCTGCCTCTGCCGGTGTACCTGTCGCTATCCTGC
CTCTGCCGGTGTACCTGTCGCT
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