mRNA_H-paniculata_contig13482.2167.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13482.2167.1
Unique NamemRNA_H-paniculata_contig13482.2167.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13482.2167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13482contigH-paniculata_contig13482:1092..2533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size531
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13482.2167.1prot_H-paniculata_contig13482.2167.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13482 1130..2409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.5184693-UTR-H-paniculata_contig13482:1091..11291622929068.5184693-UTR-H-paniculata_contig13482:1091..1129Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13482 1092..1129 +
1691480719.5144382-UTR-H-paniculata_contig13482:1091..11291691480719.5144382-UTR-H-paniculata_contig13482:1091..1129Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13482 1092..1129 +
1622929068.5472863-UTR-H-paniculata_contig13482:2409..25331622929068.5472863-UTR-H-paniculata_contig13482:2409..2533Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13482 2410..2533 +
1691480719.5413234-UTR-H-paniculata_contig13482:2409..25331691480719.5413234-UTR-H-paniculata_contig13482:2409..2533Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13482 2410..2533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.5286603-CDS-H-paniculata_contig13482:1129..11571622929068.5286603-CDS-H-paniculata_contig13482:1129..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13482 1130..1157 +
1691480719.525993-CDS-H-paniculata_contig13482:1129..11571691480719.525993-CDS-H-paniculata_contig13482:1129..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13482 1130..1157 +
1622929068.5381944-CDS-H-paniculata_contig13482:2068..24091622929068.5381944-CDS-H-paniculata_contig13482:2068..2409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13482 2069..2409 +
1691480719.5335107-CDS-H-paniculata_contig13482:2068..24091691480719.5335107-CDS-H-paniculata_contig13482:2068..2409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13482 2069..2409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13482.2167.1

>prot_H-paniculata_contig13482.2167.1 ID=prot_H-paniculata_contig13482.2167.1|Name=mRNA_H-paniculata_contig13482.2167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MSRRPIFSRGACSVDLQTACLLGEVVSILHTACCRPPILGMLRANVDVGP
GHMWVMTIAMWKRSVKEFRVTRHVSVAWPPLLFCFAGKCIQVQIEVNYIT
STCVRWSYNMKIRVIVRVTVVE*
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mRNA from alignment at H-paniculata_contig13482:1092..2533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13482.2167.1 ID=mRNA_H-paniculata_contig13482.2167.1|Name=mRNA_H-paniculata_contig13482.2167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1442bp|location=Sequence derived from alignment at H-paniculata_contig13482:1092..2533+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTTTGACGCAAAAGGTGTTGGCCTTTCACGCGGAATGAGTCGAAGA
CCAATCTTCTCTCGAGGTGAGGAGTGGCGATCGTTCGCTGGATATGTATA
TATATATATTTTTTTTTTCTTGGTTCTTGTTTTTGCACAAATTCTTATCT
TCTGACGCTTTTTTTCGGACGTTGGGATATCTTTCGGTGATTCCACTGCT
TATTTTCCAGATTAGTAGCAACTTTGAACAAGGCATGAAGGCAATGGACT
GATGATTTTTAACTGCGTTTTTTCGTCGGTGTGTAAAACATTGTACCGAA
ACCCGACTTTCAAGTCTTGGTAGACGAATACCTCGACAGCTGGGGCGACC
GTTACAACGAGGACCTCTACACGACAAACGGGACCTATCCAGAGTCGGAT
CTTTTGTGATGGTGTGATGTAATATGTTCTTGGGGTCACCGTGCTATCGA
TGTACTTTTTTTGCTGATCAAAAGTATACCCACCTGAGGTTTAACGTCAG
CTACATAACATCAACATGGATATCGAATGAGCGTTAGAGCTTACTTGTAC
CAACTGAGGCAGGTAAGTTGGCTTATGAATTAGGCTCCCGGTGTATTTTT
TCCTCCTGTGATCCATTTATGTGAATGCTAGCTATTCCATGTTTCACGTA
CATTACACACGCGAGTGATGCTTTGTAAAGGTTGTAGCAGACGTTGTGCC
AGGTCGAAGACATGCGAGTTTTCCTGGTACTCGGTCATGATGTGGTGAGA
AACAAATGTCATGTGAACAGGCTCCTGTCGATTTAGCTCTGCCAAGCAGT
ATCCTGGAATATCCGTCAAGTCCATCCGAGCGTCGGCCCACCTGGTAGAC
ATGCGTGGGCGGATCTGTATGAGTTGTAGGAGTGCTCCTCTCCTCTCCCT
CCCCCACCCTCCTTCCTCCCCCAACTCTTACCTGGCTTTCTATCCGTCGT
GCTTCCTTTCGTTCGGTTCGGGGCAAGGCGCTTGCAGTGTGGATTTACAG
ACTGCTTGCTTGCTTGGAGAAGTGGTGAGCATACTGCATACGGCATGCTG
CAGGCCTCCTATTTTAGGTATGTTAAGGGCCAACGTGGATGTGGGACCGG
GTCATATGTGGGTCATGACGATTGCAATGTGGAAGCGATCGGTCAAGGAG
TTTCGTGTGACTCGGCATGTCTCCGTCGCATGGCCTCCCTTATTGTTTTG
TTTTGCTGGTAAGTGTATACAAGTACAGATTGAAGTCAACTACATAACCT
CAACATGTGTACGATGGAGTTATAATATGAAGATCAGAGTTATAGTTCGA
GTGACTGTCGTAGAGTAATTTTACTACCATAGGGAGAATTTCAGTTATCG
AAATTGAGTGTTGTTTTCGATTTTGATGGTGTCAGTCGTTCATATGAGAA
CTATTTCATGTTTTATCTACAGTGCACGTGCGGCCGATACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13482:1092..2533+

>mRNA_H-paniculata_contig13482.2167.1 ID=mRNA_H-paniculata_contig13482.2167.1|Name=mRNA_H-paniculata_contig13482.2167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig13482:1092..2533+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCGAAGACCAATCTTCTCTCGAGATGAGTCGAAGACCAATCTTCT
CTCGAGGCGCTTGCAGTGTGGATTTACAGACTGCTTGCTTGCTTGGAGAA
GTGGTGAGCATACTGCATACGGCATGCTGCAGGCCTCCTATTTTAGGTAT
GTTAAGGGCCAACGTGGATGTGGGACCGGGTCATATGTGGGTCATGACGA
TTGCAATGTGGAAGCGATCGGTCAAGGAGTTTCGTGTGACTCGGCATGTC
TCCGTCGCATGGCCTCCCTTATTGTTTTGTTTTGCTGGTAAGTGTATACA
AGTACAGATTGAAGTCAACTACATAACCTCAACATGTGTACGATGGAGTT
ATAATATGAAGATCAGAGTTATAGTTCGAGTGACTGTCGTAGAGTAAGCG
CTTGCAGTGTGGATTTACAGACTGCTTGCTTGCTTGGAGAAGTGGTGAGC
ATACTGCATACGGCATGCTGCAGGCCTCCTATTTTAGGTATGTTAAGGGC
CAACGTGGATGTGGGACCGGGTCATATGTGGGTCATGACGATTGCAATGT
GGAAGCGATCGGTCAAGGAGTTTCGTGTGACTCGGCATGTCTCCGTCGCA
TGGCCTCCCTTATTGTTTTGTTTTGCTGGTAAGTGTATACAAGTACAGAT
TGAAGTCAACTACATAACCTCAACATGTGTACGATGGAGTTATAATATGA
AGATCAGAGTTATAGTTCGAGTGACTGTCGTAGAGTAA
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