mRNA_H-paniculata_contig13481.2166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13481.2166.1
Unique NamemRNA_H-paniculata_contig13481.2166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.260e-41
Identity = 68/137 (49.64%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 GAMGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGYEGSQNEKTIVRLDKAIS*IRKDEPYVSTEFTLIYADGTVTTHKGVFSIVDGGYHKWRILVCPMKNPGSAETILWMQRLESVRKDV 411
            GA+GSTD+TH++WG  P + +R+YTGKE  PT+A+++ VDHS RVL+VT+G+ G+ N+KTI+R DKA++ IR D  Y   ++ L   DG     KG + +VD GYHKWR L+ P K P     +++ +RLES RKDV
Sbjct:  153 GAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDV 289          
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.880e-41
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 GAMGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGYEGSQNEKTIVRLDKAIS*IRKDEPYVSTEFTLIYADGTVTTHKGVFSIVDGGYHKWRILVCPMKNPGSAETILWMQRLESVRKDV 411
            GAMGS D+TH+ W   P + +R YTGKE  PT+ Y++ VDH+ R ++VT+G+ GS N+KT V  D A+  IR D+ Y    F +   DGT TT KG + +VD GYHKW+IL+ P K P S   +L+ +RLESVRKDV
Sbjct:   30 GAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDV 166          
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.060e-40
Identity = 68/137 (49.64%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 GAMGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGYEGSQNEKTIVRLDKAIS*IRKDEPYVSTEFTLIYADGTVTTHKGVFSIVDGGYHKWRILVCPMKNPGSAETILWMQRLESVRKDV 411
            GA+GSTD+TH++WG  P + +R+YTGKE  PT+A+++ VDHS RVL+VT+G+ G+ N+KTI+R DKA++ IR D  Y   ++ L   DG     KG + +VD GYHKWR L+ P K P     +++ +RLES RKDV
Sbjct:  244 GAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDV 380          
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.230e-40
Identity = 71/137 (51.82%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 GAMGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGYEGSQNEKTIVRLDKAIS*IRKDEPYVSTEFTLIYADGTVTTHKGVFSIVDGGYHKWRILVCPMKNPGSAETILWMQRLESVRKDV 411
            GA GSTD+TH+ WG  P + +R YTGKE  PT+AY++ VDH+ RVL+VT G+ GS N+K+I+R D A++ IR+D  Y   EFT+  ADGT    KG + +VD GYHKW  L+ P K P     + + +RLESVRKDV
Sbjct:  228 GATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDV 364          
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.140e-37
Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 GAMGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGYEGSQNEKTIVRLDKAIS*IRKDEPYVSTEFTLIYADGTVTTHKGVFSIVDGGYHKWRILVCPMKNPGSAETILWMQRLESVRKDV 411
            GAMGS D+TH+ W   P + +R YTGKE +PT+ Y++ V+H+ R ++VT+G+  S N+KT V  D  +  IR D  Y    F +   DGT TT KG + +VD GYHKW+IL+ P K P S   IL+ +RLESVRKDV
Sbjct:  170 GAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDV 306          
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.570e-33
Identity = 69/165 (41.82%), Postives = 93/165 (56.36%), Query Frame = 1
Query:    1 GAMGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGYEGSQNEKTIVRLDKAIS*IRKDEPYV----------------------------STEFTLIYADGTVTTHKGVFSIVDGGYHKWRILVCPMKNPGSAETILWMQRLESVRKDV 411
            GA+GS D+TH+ W   P + +R YTGKE  PT+AY++ VDH+ R ++VT+G+ GS N+KTIV  D A+  I  D+ Y                                F +   DGT TT KG + +VD GYHKW+IL+ P K P S   +L+ +RLESVRKDV
Sbjct:  157 GAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDV 321          
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 7.850e-33
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   49 PVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGYEGSQNEKTIVRLDKAIS*IRKDEPYVSTEFTLIYADGTVTTHKGVFSIVDGGYHKWRILVCPMKNPGSAETILWMQRLESVRKDV 411
            P + +R YTGKE  PT+AY++ VDH+ RVL+VT G+ GS N+K+I+R D A++ IR+D  Y   EFT+  ADGT    KG + +VD GYHKW  L+ P K P     + + +RLESVRKDV
Sbjct:    3 PYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDV 123          
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.520e-31
Identity = 53/107 (49.53%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 GAMGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGYEGSQNEKTIVRLDKAIS*IRKDEPYVSTEFTLIYADGTVTTHKGVFSIVDGGYHK 321
            GA+GSTD+TH+ W   P S +R YTGKE +P++AY+ IVDH+ R+L+VTKG+ G+ N+KTI+  D A++ IR+D  Y    +TL   +G     KG +SIVD GY+K
Sbjct:   11 GAIGSTDVTHIRWAFCPYSWARQYTGKEGLPSIAYQAIVDHTGRILAVTKGFAGAMNDKTIIWYDTAVAKIRRDPVYTEKVYTLSDKNGQPFERKGNYSIVDNGYNK 117          
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.540e-30
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 GAMGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGYEGSQNEKTIVRLDKAIS*IRKDEPYVSTEFTLIYADGTVTTHKGVFSIVDGGYHKWRILVCPMKNPGSAE 366
            GAMGS D+TH+ W   P +  R YTGKE +PT+ Y++ V+H+ R  +VT+G+ GS N+KTIV  D A+  IR D+ Y    F +   DGT TT KG + +VD GYHKW+IL+   + P   E
Sbjct:  197 GAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVPAERE 318          
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Match: A0A7S4F9V1_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F9V1_CHRCT)

HSP 1 Score: 123 bits (309), Expect = 2.390e-30
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 GAMGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTK-GYEGSQNEKTIVRLDKAIS*IRKDEPYVSTEFTLIYADGTVTTHKGVFSIVDGGYHKWRILVCPMKNPGSAETILWMQRLESVRKDV 411
            GA+ S D  HVHW   P      + GKE  PT  Y + VDHS R+L VT   + G++++KT+ R D  I  + + E Y   EF +   DGT  T KG++++VDGGYH WR L+CP+K+    +   W +RLESVRKDV
Sbjct:  246 GAICSIDGVHVHWNRCPCKQWAAHKGKEGYPTRVYNVAVDHSRRILHVTDHSHPGARSDKTLARSDDLIVGMHEGELYSQVEFEVFRDDGTTKTIKGLYALVDGGYHTWRCLMCPVKSAQQMDVKYWSKRLESVRKDV 383          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13481.2166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE2.260e-4149.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI3.880e-4150.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPH7_9PHAE1.060e-4049.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE3.230e-4051.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE1.140e-3748.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.570e-3341.82DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTC6_9PHAE7.850e-3350.41DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J792_9PHAE3.520e-3149.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI1.540e-3046.72Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A7S4F9V1_CHRCT2.390e-3044.20Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13481contigH-paniculata_contig13481:1775..2829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size412
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13481.2166.1prot_H-paniculata_contig13481.2166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13481 1781..1984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.4483757-UTR-H-paniculata_contig13481:1774..17801622929068.4483757-UTR-H-paniculata_contig13481:1774..1780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13481 1775..1780 +
1691480719.4753795-UTR-H-paniculata_contig13481:1774..17801691480719.4753795-UTR-H-paniculata_contig13481:1774..1780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13481 1775..1780 +
1622929068.472596-UTR-H-paniculata_contig13481:1984..20951622929068.472596-UTR-H-paniculata_contig13481:1984..2095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13481 1985..2095 +
1691480719.4958718-UTR-H-paniculata_contig13481:1984..20951691480719.4958718-UTR-H-paniculata_contig13481:1984..2095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13481 1985..2095 +
1622929068.4821696-UTR-H-paniculata_contig13481:2738..28291622929068.4821696-UTR-H-paniculata_contig13481:2738..2829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13481 2739..2829 +
1691480719.504919-UTR-H-paniculata_contig13481:2738..28291691480719.504919-UTR-H-paniculata_contig13481:2738..2829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13481 2739..2829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.4625714-CDS-H-paniculata_contig13481:1780..19841622929068.4625714-CDS-H-paniculata_contig13481:1780..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13481 1781..1984 +
1691480719.4865072-CDS-H-paniculata_contig13481:1780..19841691480719.4865072-CDS-H-paniculata_contig13481:1780..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13481 1781..1984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13481.2166.1

>prot_H-paniculata_contig13481.2166.1 ID=prot_H-paniculata_contig13481.2166.1|Name=mRNA_H-paniculata_contig13481.2166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MGSTDITHVHWGCAPVSHSRLYTGKEKIPTLAYEMIVDHSSRVLSVTKGY
EGSQNEKTIVRLDKAIS*
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mRNA from alignment at H-paniculata_contig13481:1775..2829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13481.2166.1 ID=mRNA_H-paniculata_contig13481.2166.1|Name=mRNA_H-paniculata_contig13481.2166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1055bp|location=Sequence derived from alignment at H-paniculata_contig13481:1775..2829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCGATGGGATCCACGGATATTACTCACGTCCACTGGGGCTGCGCGCC TGTTTCGCACTCCAGACTGTACACTGGGAAAGAGAAGATTCCCACACTGG CGTACGAGATGATCGTGGACCACTCGAGTCGAGTTCTCTCCGTCACCAAA GGGTACGAGGGCTCCCAAAACGAAAAGACCATCGTGCGGCTGGACAAGGC AATTTCGTAGATTCGTAAAGACGAACCATACGTGTCCACCGAGTTCACCC TCATCTACGCGGACGGTACAGTGACTACGCACAAAGGTGTTTTCAGCATC GTCGACGGGGGATACCACAAGGTAAGGAAAGGTTGTGGTCGCTGCCGTCG AGCAGTTGCTAGTGTGATTTCGTACACCAGTACATTTAAAACGGAGAGCG GGATGTACTGCACATCCTGCCCCATGACAACAGCCCTCGCCTATCCATCG AAGAAGCCACAATATGATCACGCAAGGGATACAGGCAAAAGGAACGTAGT TTTGCAAACTTTCGGCGTTTGGGTTAACTTAGAAGCACGGTCTTCTACAC CACTTCGAAGTGAAGATGCAAATGTTGCACGCGTCGTACGAAAAAAACAA GGCGTTGTTGGTTGGGGTTTGACGGTTGCTGTATCGGATACTAACCATAC CCTGTGCAAACGTGTGTAACTGGCATTTTTTCCGCTTTATCGAAGAACTG TAAATTTCTAGTGTTTCAGTGTAGGGAAACATATACCGCCACCTAGAAAT AATTATGATATTACCGTGCCGCCTACCCGATCGTCGCGGATTATCCGGCC GTTGTGAAGACGGAAGGTTGCCATAACAGCGGGGTCTTATAACCACGAAC GAACTCTGTGTATGCCGCCTGCAAAACTACCACCGTGCCTTTCCCCAGCC CCGCGGCACCCCCTCGTTCACTTCTTTCCCCCCCCCCCCCCCCCCCCATT CCTGGAAAACACAGTGGAGGATTCTCGTTTGCCCGATGAAAAATCCTGGC TCGGCTGAGACAATACTGTGGATGCAGCGTCTGGAGAGTGTGCGCAAGGA CGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig13481:1775..2829+

>mRNA_H-paniculata_contig13481.2166.1 ID=mRNA_H-paniculata_contig13481.2166.1|Name=mRNA_H-paniculata_contig13481.2166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig13481:1775..2829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATCCACGGATATTACTCACGTCCACTGGGGCTGCGCGCCTGTTTC
GCACTCCAGACTGTACACTGGGAAAGAGAAGATTCCCACACTGGCGTACG
AGATGATCGTGGACCACTCGAGTCGAGTTCTCTCCGTCACCAAAGGGTAC
GAGGGCTCCCAAAACGAAAAGACCATCGTGCGGCTGGACAAGGCAATTTC
GTAGATGGGATCCACGGATATTACTCACGTCCACTGGGGCTGCGCGCCTG
TTTCGCACTCCAGACTGTACACTGGGAAAGAGAAGATTCCCACACTGGCG
TACGAGATGATCGTGGACCACTCGAGTCGAGTTCTCTCCGTCACCAAAGG
GTACGAGGGCTCCCAAAACGAAAAGACCATCGTGCGGCTGGACAAGGCAA
TTTCGTAG
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