mRNA_H-paniculata_contig13474.2161.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13474.2161.1 vs. uniprot
Match: D7FJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE2_ECTSI) HSP 1 Score: 317 bits (811), Expect = 9.890e-93 Identity = 222/509 (43.61%), Postives = 305/509 (59.92%), Query Frame = 1 Query: 1 NPAARHEEARMKFEQDVASKLMRVIEKKKLDNLKEELADETVNREAAQARLERLEKSIPKLYEDLKKMQEQLVESRMETNELRKLNTMITADIENSIAARKREEDEKNTSAAMLLAEDGAVDATIRQRSIQNRDG--NGRISLKATGGRILGALKFGYKDVGSANSQ----------LAILQKAKEMKMLVVQRPTS----------PVDDSSTLDDGEVNERGGKPVEELENEKAVAVEKATKLRYKLRMEEVDD--RQRALLLEEGKILADGPVSPRTHAAARLQLTYLTQNKVDLESKVAGMQARSKSIRLQVPLDENQLLRRRLEAIERTALKLNLPGPKGEIEAPTERLDLECSEVLRLKDTIVTLKADKFKVTEEVTRIEQELNKLKQFKAEITNLADSSLDESSSDGFDDTSVNNVGNSDGGKISTKWKQRAKQLQIYTKWQLADSEARARREKAENDLRTRSHEIMAGEMAILSKNYRRELTRLYKVNQLLRERLAEYQVQ 1455 NP ARHEEAR +FE DVASKLM+VIEKKKL NL+EELADE NREAA ARL +E+ IPKL+EDLK +Q QLV+SRMETNELRK+NT++T D+ + AA + +AA+ AE T+R I N G S + G ++GA++F + + A + L+KAKEM VVQ P PVDD+ + +D E+ + + + LE+E+ V A LR + DD ++RA + ++ R A+ + ++ L + + DLESK+A MQ S DEN LRRRLEAIERT LKLN+ G +++ ERL+LE +EV RL+ T+ L+ DK +TEE +E ++ +L QFKAE NLAD S+++S S+G + S G D G KWKQRAK+LQ Y KWQLA++E +A+R++A+ L++RSHEI+ EMA+L K YRRE RLY+VN+ L ++LAE Q Sbjct: 549 NPTARHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLAMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVMTTDL--AQAASSEGQVRIRDAAAVREAE-----TTLRDHPIGNAAAVAGGAPSFRHAAGAVVGAIRFSTRQLAGAGREPRAGPAQQQDTVALRKAKEMGQWVVQNPPEEHQEGEQEEYPVDDNDSAEDRELVSKLKRQISALEDERRAPVAGAAGLRSDMDDFRNDDGGKERAYTSGGTPNAGEETLADRRFASIKFEVENLKEVRRDLESKIAKMQVES---------DENSFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMMTEEKASLEYDIQRLAQFKAEFENLADISINDSESNGLNGDSGTAGGAVDCGD-GGKWKQRAKKLQQYIKWQLAEAETQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERGRLYEVNRTLLQQLAELDAQ 1040
BLAST of mRNA_H-paniculata_contig13474.2161.1 vs. uniprot
Match: A0A6H5L653_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L653_9PHAE) HSP 1 Score: 306 bits (785), Expect = 2.160e-89 Identity = 227/541 (41.96%), Postives = 313/541 (57.86%), Query Frame = 1 Query: 1 NPAARHEEARMKFEQDVASKLMRVIEKKKLDNLKEELADETVNREAAQARLERLEKSIPKLYEDLKKMQEQLVESRMETNELRKLNTMITADIENSIAARKREEDEKNTSAAMLLAEDGAVDATIRQRSIQNRD---GNGRISLKATGGRILGALKFGYKDV---------GSANSQLAI-LQKAKEMKMLVVQRPTS------PVDDSSTLDDGEVNERGGKPVEELENEKAVAVEKATKLRYKLRMEEVDD--RQRALLLEEGKILADGPVSPRTHAAARLQLTYLTQNKVDLESKVAGMQARSKSIRLQVPLDENQLLRRRLEAIERTALKLNLPGPKGEIEAPTERLDLECSEVLRLKDTIVTLKADKFKVTE-----------------------------------EVTRIEQELNKLKQFKAEITNLADSSLDESSSDGFDDTSVNNVGNSDGGKISTKWKQRAKQLQIYTKWQLADSEARARREKAENDLRTRSHEIMAGEMAILSKNYRRELTRLYKVNQLLRERLAEYQVQ 1455 NP RHEEAR +FE DVASKLM+VIEKKKL NL+EELADE NREAA ARL +E+ IPKL+EDLK +Q QLV+SRMETNELRK+NT++T D+ + AA + +AA+ AE T+R I+N G R+ + T ++GA++F + + G A Q + L+KAKEM VVQ P PVDD+ + +D E+ + + + LE+E+ V V A +LR + DD ++RA + ++ R A+ RL++ L + + DLESK+A MQ S DEN LRRRLEAIERT LKLN+ G +++ ERL+LE +EV RL+ T+ L+ DK +TE E +E ++ +L QFKAE NLAD S+++S S+G D S G +D G KWKQRAK+LQ Y KWQLA++E +A+R++A+ L++RSHEI+ EMA+L K YRRE +RLY+VN+ L ++LAE Q Sbjct: 380 NPTLRHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLAMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVMTTDL--AQAASSEGQVRIRDAAAVREAE-----TTLRDHPIENAAAVAGGARL-FRHTASTVVGAIRFSTRQIAGTRGGPGAGPAYQQDTVALRKAKEMGQWVVQNPPEEHQAEYPVDDNDSAEDRELVSKLKRQISALEDERRVPVAGAGELRSDMDDFRNDDGGKERAYTSGGTPNAEEETLADRRFASIRLEVENLKEVRRDLESKIAKMQVES---------DENNFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMITEAAAKAQDESVPLVQVEAERVSFERKIAGLERQHQQEKASLEYDIQRLAQFKAEFENLADISINDSESNGLDGDSGTAGGAADCGD-GGKWKQRAKKLQQYVKWQLAEAETQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERSRLYEVNRTLLQQLAELDAQ 902 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13474.2161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13474.2161.1 >prot_H-paniculata_contig13474.2161.1 ID=prot_H-paniculata_contig13474.2161.1|Name=mRNA_H-paniculata_contig13474.2161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=483bp MKFEQDVASKLMRVIEKKKLDNLKEELADETVNREAAQARLERLEKSIPKback to top mRNA from alignment at H-paniculata_contig13474:672..5965- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13474.2161.1 ID=mRNA_H-paniculata_contig13474.2161.1|Name=mRNA_H-paniculata_contig13474.2161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5294bp|location=Sequence derived from alignment at H-paniculata_contig13474:672..5965- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13474:672..5965- >mRNA_H-paniculata_contig13474.2161.1 ID=mRNA_H-paniculata_contig13474.2161.1|Name=mRNA_H-paniculata_contig13474.2161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2898bp|location=Sequence derived from alignment at H-paniculata_contig13474:672..5965- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |