mRNA_H-paniculata_contig13474.2161.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13474.2161.1
Unique NamemRNA_H-paniculata_contig13474.2161.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13474.2161.1 vs. uniprot
Match: D7FJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE2_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 9.890e-93
Identity = 222/509 (43.61%), Postives = 305/509 (59.92%), Query Frame = 1
Query:    1 NPAARHEEARMKFEQDVASKLMRVIEKKKLDNLKEELADETVNREAAQARLERLEKSIPKLYEDLKKMQEQLVESRMETNELRKLNTMITADIENSIAARKREEDEKNTSAAMLLAEDGAVDATIRQRSIQNRDG--NGRISLKATGGRILGALKFGYKDVGSANSQ----------LAILQKAKEMKMLVVQRPTS----------PVDDSSTLDDGEVNERGGKPVEELENEKAVAVEKATKLRYKLRMEEVDD--RQRALLLEEGKILADGPVSPRTHAAARLQLTYLTQNKVDLESKVAGMQARSKSIRLQVPLDENQLLRRRLEAIERTALKLNLPGPKGEIEAPTERLDLECSEVLRLKDTIVTLKADKFKVTEEVTRIEQELNKLKQFKAEITNLADSSLDESSSDGFDDTSVNNVGNSDGGKISTKWKQRAKQLQIYTKWQLADSEARARREKAENDLRTRSHEIMAGEMAILSKNYRRELTRLYKVNQLLRERLAEYQVQ 1455
            NP ARHEEAR +FE DVASKLM+VIEKKKL NL+EELADE  NREAA ARL  +E+ IPKL+EDLK +Q QLV+SRMETNELRK+NT++T D+  + AA    +     +AA+  AE      T+R   I N      G  S +   G ++GA++F  + +  A  +             L+KAKEM   VVQ P            PVDD+ + +D E+  +  + +  LE+E+   V  A  LR  +     DD  ++RA          +  ++ R  A+ + ++  L + + DLESK+A MQ  S         DEN  LRRRLEAIERT LKLN+ G   +++   ERL+LE +EV RL+ T+  L+ DK  +TEE   +E ++ +L QFKAE  NLAD S+++S S+G +  S    G  D G    KWKQRAK+LQ Y KWQLA++E +A+R++A+  L++RSHEI+  EMA+L K YRRE  RLY+VN+ L ++LAE   Q
Sbjct:  549 NPTARHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLAMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVMTTDL--AQAASSEGQVRIRDAAAVREAE-----TTLRDHPIGNAAAVAGGAPSFRHAAGAVVGAIRFSTRQLAGAGREPRAGPAQQQDTVALRKAKEMGQWVVQNPPEEHQEGEQEEYPVDDNDSAEDRELVSKLKRQISALEDERRAPVAGAAGLRSDMDDFRNDDGGKERAYTSGGTPNAGEETLADRRFASIKFEVENLKEVRRDLESKIAKMQVES---------DENSFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMMTEEKASLEYDIQRLAQFKAEFENLADISINDSESNGLNGDSGTAGGAVDCGD-GGKWKQRAKKLQQYIKWQLAEAETQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERGRLYEVNRTLLQQLAELDAQ 1040          
BLAST of mRNA_H-paniculata_contig13474.2161.1 vs. uniprot
Match: A0A6H5L653_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L653_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 2.160e-89
Identity = 227/541 (41.96%), Postives = 313/541 (57.86%), Query Frame = 1
Query:    1 NPAARHEEARMKFEQDVASKLMRVIEKKKLDNLKEELADETVNREAAQARLERLEKSIPKLYEDLKKMQEQLVESRMETNELRKLNTMITADIENSIAARKREEDEKNTSAAMLLAEDGAVDATIRQRSIQNRD---GNGRISLKATGGRILGALKFGYKDV---------GSANSQLAI-LQKAKEMKMLVVQRPTS------PVDDSSTLDDGEVNERGGKPVEELENEKAVAVEKATKLRYKLRMEEVDD--RQRALLLEEGKILADGPVSPRTHAAARLQLTYLTQNKVDLESKVAGMQARSKSIRLQVPLDENQLLRRRLEAIERTALKLNLPGPKGEIEAPTERLDLECSEVLRLKDTIVTLKADKFKVTE-----------------------------------EVTRIEQELNKLKQFKAEITNLADSSLDESSSDGFDDTSVNNVGNSDGGKISTKWKQRAKQLQIYTKWQLADSEARARREKAENDLRTRSHEIMAGEMAILSKNYRRELTRLYKVNQLLRERLAEYQVQ 1455
            NP  RHEEAR +FE DVASKLM+VIEKKKL NL+EELADE  NREAA ARL  +E+ IPKL+EDLK +Q QLV+SRMETNELRK+NT++T D+  + AA    +     +AA+  AE      T+R   I+N     G  R+  + T   ++GA++F  + +         G A  Q  + L+KAKEM   VVQ P        PVDD+ + +D E+  +  + +  LE+E+ V V  A +LR  +     DD  ++RA          +  ++ R  A+ RL++  L + + DLESK+A MQ  S         DEN  LRRRLEAIERT LKLN+ G   +++   ERL+LE +EV RL+ T+  L+ DK  +TE                                   E   +E ++ +L QFKAE  NLAD S+++S S+G D  S    G +D G    KWKQRAK+LQ Y KWQLA++E +A+R++A+  L++RSHEI+  EMA+L K YRRE +RLY+VN+ L ++LAE   Q
Sbjct:  380 NPTLRHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLAMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVMTTDL--AQAASSEGQVRIRDAAAVREAE-----TTLRDHPIENAAAVAGGARL-FRHTASTVVGAIRFSTRQIAGTRGGPGAGPAYQQDTVALRKAKEMGQWVVQNPPEEHQAEYPVDDNDSAEDRELVSKLKRQISALEDERRVPVAGAGELRSDMDDFRNDDGGKERAYTSGGTPNAEEETLADRRFASIRLEVENLKEVRRDLESKIAKMQVES---------DENNFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMITEAAAKAQDESVPLVQVEAERVSFERKIAGLERQHQQEKASLEYDIQRLAQFKAEFENLADISINDSESNGLDGDSGTAGGAADCGD-GGKWKQRAKKLQQYVKWQLAEAETQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERSRLYEVNRTLLQQLAELDAQ 902          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13474.2161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJE2_ECTSI9.890e-9343.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L653_9PHAE2.160e-8941.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13474contigH-paniculata_contig13474:672..5965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006020.1
Exons8
Model size1479
Cds size1449
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929067.7943883-CDS-H-paniculata_contig13474:671..8541622929067.7943883-CDS-H-paniculata_contig13474:671..854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 672..854 -
1691480719.0899816-CDS-H-paniculata_contig13474:671..8541691480719.0899816-CDS-H-paniculata_contig13474:671..854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 672..854 -
1622929067.8138564-CDS-H-paniculata_contig13474:1100..13281622929067.8138564-CDS-H-paniculata_contig13474:1100..1328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 1101..1328 -
1691480719.0990899-CDS-H-paniculata_contig13474:1100..13281691480719.0990899-CDS-H-paniculata_contig13474:1100..1328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 1101..1328 -
1622929067.8317857-CDS-H-paniculata_contig13474:2404..25951622929067.8317857-CDS-H-paniculata_contig13474:2404..2595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 2405..2595 -
1691480719.1091733-CDS-H-paniculata_contig13474:2404..25951691480719.1091733-CDS-H-paniculata_contig13474:2404..2595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 2405..2595 -
1622929067.8477952-CDS-H-paniculata_contig13474:2912..31031622929067.8477952-CDS-H-paniculata_contig13474:2912..3103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 2913..3103 -
1691480719.122198-CDS-H-paniculata_contig13474:2912..31031691480719.122198-CDS-H-paniculata_contig13474:2912..3103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 2913..3103 -
1622929067.8843908-CDS-H-paniculata_contig13474:3641..37121622929067.8843908-CDS-H-paniculata_contig13474:3641..3712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 3642..3712 -
1691480719.1327937-CDS-H-paniculata_contig13474:3641..37121691480719.1327937-CDS-H-paniculata_contig13474:3641..3712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 3642..3712 -
1622929067.8998806-CDS-H-paniculata_contig13474:4422..48031622929067.8998806-CDS-H-paniculata_contig13474:4422..4803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 4423..4803 -
1691480719.1410522-CDS-H-paniculata_contig13474:4422..48031691480719.1410522-CDS-H-paniculata_contig13474:4422..4803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 4423..4803 -
1622929067.9155035-CDS-H-paniculata_contig13474:5219..53511622929067.9155035-CDS-H-paniculata_contig13474:5219..5351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 5220..5351 -
1691480719.1495147-CDS-H-paniculata_contig13474:5219..53511691480719.1495147-CDS-H-paniculata_contig13474:5219..5351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 5220..5351 -
1622929067.929683-CDS-H-paniculata_contig13474:5863..59351622929067.929683-CDS-H-paniculata_contig13474:5863..5935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 5864..5935 -
1691480719.1582553-CDS-H-paniculata_contig13474:5863..59351691480719.1582553-CDS-H-paniculata_contig13474:5863..5935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13474 5864..5935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929067.9459271-UTR-H-paniculata_contig13474:5935..59651622929067.9459271-UTR-H-paniculata_contig13474:5935..5965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13474 5936..5965 -
1691480719.1689932-UTR-H-paniculata_contig13474:5935..59651691480719.1689932-UTR-H-paniculata_contig13474:5935..5965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13474 5936..5965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13474.2161.1prot_H-paniculata_contig13474.2161.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13474 672..5935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13474.2161.1

>prot_H-paniculata_contig13474.2161.1 ID=prot_H-paniculata_contig13474.2161.1|Name=mRNA_H-paniculata_contig13474.2161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=483bp
MKFEQDVASKLMRVIEKKKLDNLKEELADETVNREAAQARLERLEKSIPK
LYEDLKKMQEQLVESRMETNELRKLNTMITADIENSIAARKREEDEKNTS
AAMLLAEDGAVDATIRQRSIQNRDGNGRISLKATGGRILGALKFGYKDVG
SANSQLAILQKAKEMKMLVVQRPTSPVDDSSTLDDGEVNERGGKPVEELE
NEKAVAVEKATKLRYKLRMEEVDDRQRALLLEEGKILADGPVSPRTHAAA
RLQLTYLTQNKVDLESKVAGMQARSKSIRLQVPLDENQLLRRRLEAIERT
ALKLNLPGPKGEIEAPTERLDLECSEVLRLKDTIVTLKADKFKVTEEVTR
IEQELNKLKQFKAEITNLADSSLDESSSDGFDDTSVNNVGNSDGGKISTK
WKQRAKQLQIYTKWQLADSEARARREKAENDLRTRSHEIMAGEMAILSKN
YRRELTRLYKVNQLLRERLAEYQVQVSAKDTN*
back to top

mRNA from alignment at H-paniculata_contig13474:672..5965-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13474.2161.1 ID=mRNA_H-paniculata_contig13474.2161.1|Name=mRNA_H-paniculata_contig13474.2161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5294bp|location=Sequence derived from alignment at H-paniculata_contig13474:672..5965- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCCAGCAGCGAGACACGAAGAGGCTCGCATGAAATTCGAGCAAGATGT AGCAAGCAAGCTTATGCGGGTCATCGAGAAAAAGAAACTGGATAATCTCA AGGTTGTGCAAGCACTGTAACATCGAACCGAATATACGGGGGGCGCGGGG AACTTGATTCGTACAGTGAACGATTAGACCTCTCCACCCCCCAAATACTT GTTCTCTCGGCTTGTGTACGATATATGAATGTTGTTGTACATCACGTTGT TTCAGACTGGTGTGTGAAGTCCACACCTTATTATTTAGTTCTCATATGCT TCGCTAGACAGTTTCGATGAGGTGGACATCACAATCCAATGCACTCCAAT CGCCCGAAAGCGCTCAGTCGTAAAATGGAAAACAAGTCACCCTCGGTATC TGAGCACTCCCTAGGCGCACAGGCCCAGTAAAGATGCACGTTCGGTCTCA CCTGTTCCACGCTAAACACCATTGACACCTGCAGGCATCAAGCAAAAGCG GCAAAATGAGGACGATAAGCGCACGTTCGGACTAACCTCTCTTGACGCTC ATTCCGTTCCCTTGCACTGAACGTCCACATCGATATGCGTTCTTGTTCCC ATCCCGTAAACTAGGAAGAATTGGCGGATGAAACGGTCAATCGAGAGGCC GCGCAGGCCCGCCTCGAGAGGCTGGAAAAGTCGATTCCAAAGTTATATGA AGACTTGAAGAAGATGCAAGAGCAACTTGTAGAATCTCGAATGGAGGTCA GGCATTGATTTTTTGCGTACCATTCTGATTCCCTAGGTGATGACATTAGA TCTTGTAAAATTGTGAAATAGCATGTGGCTACGTAGACTTCCATTTTTCC TCTAGATCCAGTCATCGAACAGTGCAGGGTACGTTGAGCATGAAACCCGT TATACTCGTATCTATGAAGGCATGCAGTCCCTCAGAGTCGGTCATGTAAC AATTCGCTTCGAAGACTTGCATTTGAATGCCTTGATTTTCGTCCCAACGG TCCGTGACATTGAAAAGGACTGCCACAGCATACAATCGCGTATTTTCCGA AAACAAGGCAACAGAAAGGTGCGTATGCTCCGGTCGGCAGCAGAAGTCTC TGGCGCAACGTGTTTGCCTGAATGGATACACTGCTACCCGACGACCATCT ACCCAACCGCAGACAAACGAACTCCGCAAGTTGAACACCATGATAACTGC CGATATTGAGAATAGCATAGCCGCGAGGAAGCGCGAGGAAGACGAGAAGA ACACATCTGCCGCCATGCTGCTAGCTGAAGACGGCGCCGTCGACGCAACT ATTCGCCAGCGAAGCATCCAGAATAGAGATGGTAACGGTCGCATCTCGTT GAAGGCAACAGGTGGTAGAATTCTAGGGGCTCTTAAGTTTGGGTACAAGG ATGTTGGGAGTGCCAATAGTCAACTTGCGATCCTACAGAAGGCGAAAGAA ATGAAGATGTTGGTGGTGCAACGCCCAACATCGCCAGTTGATGATAGCTC CACATTGGACGACGGAGAGGTGAACGAGCGGGGTGGGAAACCCGTGAACC AGGGAGCGGCGGATGAAGCAGAGGTAAAATATGTGTCACAGTTGATCTCA GCAGAACATGGGGACAAAGAAGAGAATCTACCATTGTCGCCGCTTGATAC GGGACTAAGCGCTGCACGTCGGCTTTAGATTGCCACTTAGTGTATCACAA GATAAGGTAACATACTTTGGACTAGTATTGTGTCTTCCTATCCTGAACAA CAGCTCACGAGCTGCTCTCCGGAGTACTTAAACGACGTGTTCCAAGTGCG TCCACGTGAATTAAACTCTCGCTGCTGCTACCCGATATTTTCAGGTGCTA TTGGTCCTTATCTGCTGTTGACGGAGTTCAGACCCTACGTCTTCTCAAGT ACGACACTGCACCCTTCAACCGTGGCTCACCTATGCATATTATTCTCTGG TATTCCTTGATGACCCGTAGGCAAAGAGGAGAGACTCCTCAGGAACGAGT GAGAATCTTGGAATGCACGAGAAAAACATGCTCGACATGCTGCGAAAACA GGTAGCGATGAAGCGGCATAAAGGGTACCGACAACACTACTGGGCAGCTT TGCTGGCCAGATTTGGTTCTGCTGTCTGGGTACATCTGCCAGTTTGAAAA CAGCGAGCGCACTGATAACGTTGACCTGGCTGCTGATTTAAGTCATTTTT CTACTCGGATAATATGTTACGCCCCGATTCCCGCGAATCTCGTGTGGCTG CAGGTGGAAGAGCTTGAGAATGAAAAGGCAGTAGCTGTCGAAAAGGCCAC AAAACTCAGGTATAAATTGCGTATGTTCATGCCCATTGCGACACGATTGA TGCCCATCTGGCGATGTTGAGCACTGAACACATGCTTCCTCTGTGACGTA GTCGCTTGAACATCTTCCTTTTTATGTAGAATCTTTCATGTGTTTGAGTC GAACCTCGGAAATTGGCGAGGTCCACTGGATGCGGGAGCGGCGCAAAAAG ACTCTCGGCCGAGAAATGGTCATATTCCCAAGCGCATTTCAATTATTGTG TCAGGATTAATAGTCGCTCAAGGTTTGAGTTAAAATTGACCATTTTTGCT GTTTTTCCGATTTTCACGTTTTTCCGCTGGAAAAATACAAACAGGAACAA AATATAACAATGTGTATTTATGGCACAGAGGAAGTACAGCATTTCGCGTG TCTCGAAGGCCTAGATACCTCATTTGGAGGCTCCGCAAGTCAAGACAAAA AAAACGCTAGATCTAACGACTATCTCCGGCACTGACTTCTCTTTGTGTAC ACGGCGTCGGAATTGTCGATGGCCTCATTCTCCCACACCTTCCCCATGAT CTGCTACCATAGGGAGGAGGTAGACGATAGGCAGCGAGCGTTGCTACTGG AGGAAGGAAAGATATTGGCCGATGGACCTGTCAGCCCGAGAACGCACGCA GCGGCGAGACTCCAACTCACATATCTTACCCAGAATAAGGTGGATCTCGA ATCCAAGGTCGCCGGCATGCAGGCAAGAAGCAAGTCAATTCGCCTGCAGG TCCGTGCCGACGGATGACTGGAAGTACAAACGGAGTAGGGAAAATATATA TCTAAAGTAAACGATATCAACACGATACTGCTTCCCGCAATTCCCCAAAC AAACCGATCGGAAGAGTCAATTTAACTTTCAAATTTGACAATCTGGAGTA ACTAACATGGATCTCAGGGTATAGAGCTCGATGTGCATTCTTGTTTGTTT TCATCGAACGTGAAAGTCTACGTGTGTTTGAGGGTCGAAAATGAAAGGTA TGTGCTTCCGCTTGCCCATCGTACCCCACCGTTCCCCACCTCTAATTTGA CATGTTGTCTCAGCAGGGAGCTTTAGACGAGAATCAGCTCCTCCGTCGCC GTCTAGAAGCTATTGAACGTACCGCCCTTAAGCTGAATCTTCCGGGACCA AAAGGGGAAATTGAAGCCCCCACGGAACGTCTCGATCTGGAGTGCAGTGA AGTGCTGCGCCTCAAAGACACGATTGTTACGCTCAAGGCCGACAAGTTTA AGGTGACTGAAGTATACTTCTCGCCGCTGTCCGTGGCAATACTGCCAATA AATTGTTGCAGGCATATAGCAGGCGGCGACCGAGTACAGTTACATAATGC AAAGAAAATACAGCCAGTGCAAAAACCAAAAGAAAATGCCCATTAGATCC GAGCATCGGTGGGAAGGTGGTCAAGATGTGGAGGTTGATATAGTCCAGGC TTTTTATAGCGGAAATATTGGACGATTCAAGACAATCAGATAAGAAGAGG AGTGCAGGCGTAACTTCTTCCAGAAGTTAGCTGTCCGGGGTAGCGTACAA TATCGATCGGTACGCCATCTTTACTCCTTGTGAACAAACCGTTGCCACTT CCCACCACTACATCTTTTCCCCATCACATGGCGGAAAATAACGAAATCCG TCAGCGACAGAGTACGAAACTGAGTCACGGTCAAAACAAACTGGGCATGG CAGTGTGTGATTACGAGAGGCGATGAATCAGAGCTAGGACAACATATGCG CTCAGCCTTTGCCCCTCTTCCCTCTCATATAAAGTGCGTTTGACTGGTAG CTGGGGTGCCGGCCTGGTACGGCTTCATTATACGCCCAGCAACCCTTTCT CGTGTACCGGATCCTTGCTGTAAACTTATTGGGGGTATTGTAGGAGATTG CGAAGATGAAAGAGACGAGCGTTCCGCGGGCAAAGTTGGAGGAAGCCAGG GCGATGGCGGAGAAGCAGGTCGCGTTGCTGAAGACAAGGCATGGAGAGGC ACGTCCCCTCTGACACCCATGAACTGCTCCATATCCCTGTCCTTACCAAT GTAGAAACGTACGTCATACTGTACGCATTCCGTGAGTGAGGCATGATAAG TATGCGGCCCAACACCTGCAGCGTGCTGGTACGATGGTATACATACAGTA GAGAGCGTGTTCTAATGAATATCTCCAACTCTCCATCTTCCAAACAGAGC CGCCTACTGCCGAATCGACTTCCCAGCCCTACACGAGTACAACGTTTAAC TACCTGTCCCATGCCCGCCCGGCCGCCGCCTTGTCACCGGTTCGTTGGCG AACTCGACATGCCGGTTTAACTTTCTCGGTCGATCAGGAAGTGACCCGTA TTGAACAGGAGTTGAACAAACTAAAACAATTCAAGGCCGAGATTACAAAC CTTGCGGACAGCTCACTGGACGAAAGCAGTTCCGACGGGTTCGATGACAC CAGTGTCAACAACGTTGGCAATAGCGATGGCGGCAAAATATCGACGAAAT GGAAGCAGCGAGCCAAGCAACTCCAGATATACACCAAGTGGCAACTTGCC GATTCAGAGGCCCGGGTAAATTCCCCACCACTATAATAGTATGGTGCGGC GACGACAGAGGTACTCCTCTTACGACGTATACGTCGTGATCAGTCCAGCC GTTCCGTCCAGAAAAAAAGAAAAGCGTAGCTAGATACATGTTGATTGCTG TTTTGTTTCGTGTAGGAATATATGACAGAATCACTGCTGCACGGACTTTT GACAGGTGTCCCCGCCCTCCTCTGGCGACCCTTTTGTCCTCCTGACGTGC GTCGACGTCAGGCGCGCCGCGAGAAAGCAGAGAATGATCTCAGAACACGA TCTCACGAGATCATGGCGGGCGAAATGGCCATTCTTTCGAAAAATTATCG CCGCGAACTGACTCGGTTGTACAAGGTCAATCAACTCCTCCGAGAACGAT TAGCCGAATACCAAGTCCAGGTCAGCGCAAAAGACACAAATTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13474:672..5965-

>mRNA_H-paniculata_contig13474.2161.1 ID=mRNA_H-paniculata_contig13474.2161.1|Name=mRNA_H-paniculata_contig13474.2161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2898bp|location=Sequence derived from alignment at H-paniculata_contig13474:672..5965- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATTCGAGCAAGATGTAGCAAGCAAGCTTATGCGGGTCATCGAGAA
AAAGAAACTGGATAATCTCAAGATGAAATTCGAGCAAGATGTAGCAAGCA
AGCTTATGCGGGTCATCGAGAAAAAGAAACTGGATAATCTCAAGGAAGAA
TTGGCGGATGAAACGGTCAATCGAGAGGCCGCGCAGGCCCGCCTCGAGAG
GCTGGAAAAGTCGATTCCAAAGTTATATGAAGACTTGAAGAAGATGCAAG
AGCAACTTGTAGAATCTCGAATGGAGGAAGAATTGGCGGATGAAACGGTC
AATCGAGAGGCCGCGCAGGCCCGCCTCGAGAGGCTGGAAAAGTCGATTCC
AAAGTTATATGAAGACTTGAAGAAGATGCAAGAGCAACTTGTAGAATCTC
GAATGGAGACAAACGAACTCCGCAAGTTGAACACCATGATAACTGCCGAT
ATTGAGAATAGCATAGCCGCGAGGAAGCGCGAGGAAGACGAGAAGAACAC
ATCTGCCGCCATGCTGCTAGCTGAAGACGGCGCCGTCGACGCAACTATTC
GCCAGCGAAGCATCCAGAATAGAGATGGTAACGGTCGCATCTCGTTGAAG
GCAACAGGTGGTAGAATTCTAGGGGCTCTTAAGTTTGGGTACAAGGATGT
TGGGAGTGCCAATAGTCAACTTGCGATCCTACAGAAGGCGAAAGAAATGA
AGATGTTGGTGGTGCAACGCCCAACATCGCCAGTTGATGATAGCTCCACA
TTGGACGACGGAGAGGTGAACGAGCGGGGTGGGAAACCCACAAACGAACT
CCGCAAGTTGAACACCATGATAACTGCCGATATTGAGAATAGCATAGCCG
CGAGGAAGCGCGAGGAAGACGAGAAGAACACATCTGCCGCCATGCTGCTA
GCTGAAGACGGCGCCGTCGACGCAACTATTCGCCAGCGAAGCATCCAGAA
TAGAGATGGTAACGGTCGCATCTCGTTGAAGGCAACAGGTGGTAGAATTC
TAGGGGCTCTTAAGTTTGGGTACAAGGATGTTGGGAGTGCCAATAGTCAA
CTTGCGATCCTACAGAAGGCGAAAGAAATGAAGATGTTGGTGGTGCAACG
CCCAACATCGCCAGTTGATGATAGCTCCACATTGGACGACGGAGAGGTGA
ACGAGCGGGGTGGGAAACCCGTGGAAGAGCTTGAGAATGAAAAGGCAGTA
GCTGTCGAAAAGGCCACAAAACTCAGGTATAAATTGCGTATGTGGAAGAG
CTTGAGAATGAAAAGGCAGTAGCTGTCGAAAAGGCCACAAAACTCAGGTA
TAAATTGCGTATGGAGGAGGTAGACGATAGGCAGCGAGCGTTGCTACTGG
AGGAAGGAAAGATATTGGCCGATGGACCTGTCAGCCCGAGAACGCACGCA
GCGGCGAGACTCCAACTCACATATCTTACCCAGAATAAGGTGGATCTCGA
ATCCAAGGTCGCCGGCATGCAGGCAAGAAGCAAGTCAATTCGCCTGCAGG
TCCGGAGGAGGTAGACGATAGGCAGCGAGCGTTGCTACTGGAGGAAGGAA
AGATATTGGCCGATGGACCTGTCAGCCCGAGAACGCACGCAGCGGCGAGA
CTCCAACTCACATATCTTACCCAGAATAAGGTGGATCTCGAATCCAAGGT
CGCCGGCATGCAGGCAAGAAGCAAGTCAATTCGCCTGCAGGTCCCTTTAG
ACGAGAATCAGCTCCTCCGTCGCCGTCTAGAAGCTATTGAACGTACCGCC
CTTAAGCTGAATCTTCCGGGACCAAAAGGGGAAATTGAAGCCCCCACGGA
ACGTCTCGATCTGGAGTGCAGTGAAGTGCTGCGCCTCAAAGACACGATTG
TTACGCTCAAGGCCGACAAGTTTAAGGTGACTGAACTTTAGACGAGAATC
AGCTCCTCCGTCGCCGTCTAGAAGCTATTGAACGTACCGCCCTTAAGCTG
AATCTTCCGGGACCAAAAGGGGAAATTGAAGCCCCCACGGAACGTCTCGA
TCTGGAGTGCAGTGAAGTGCTGCGCCTCAAAGACACGATTGTTACGCTCA
AGGCCGACAAGTTTAAGGTGACTGAAGAAGTGACCCGTATTGAACAGGAG
TTGAACAAACTAAAACAATTCAAGGCCGAGATTACAAACCTTGCGGACAG
CTCACTGGACGAAAGCAGTTCCGACGGGTTCGATGACACCAGTGTCAACA
ACGTTGGCAATAGCGATGGCGGCAAAATATCGACGAAATGGAAGCAGCGA
GCCAAGCAACTCCAGATATACACCAAGTGGCAACTTGCCGATTCAGAGGC
CCGGGAAGTGACCCGTATTGAACAGGAGTTGAACAAACTAAAACAATTCA
AGGCCGAGATTACAAACCTTGCGGACAGCTCACTGGACGAAAGCAGTTCC
GACGGGTTCGATGACACCAGTGTCAACAACGTTGGCAATAGCGATGGCGG
CAAAATATCGACGAAATGGAAGCAGCGAGCCAAGCAACTCCAGATATACA
CCAAGTGGCAACTTGCCGATTCAGAGGCCCGGGCGCGCCGCGAGAAAGCA
GAGAATGATCTCAGAACACGATCTCACGAGATCATGGCGGGCGAAATGGC
CATTCTTTCGAAAAATTATCGCCGCGAACTGACTCGGTTGTACAAGGTCA
ATCAACTCCTCCGAGAACGATTAGCCGAATACCAAGTCCAGGTCAGCGCA
AAAGACACAAATTGAGCGCGCCGCGAGAAAGCAGAGAATGATCTCAGAAC
ACGATCTCACGAGATCATGGCGGGCGAAATGGCCATTCTTTCGAAAAATT
ATCGCCGCGAACTGACTCGGTTGTACAAGGTCAATCAACTCCTCCGAGAA
CGATTAGCCGAATACCAAGTCCAGGTCAGCGCAAAAGACACAAATTGA
back to top