mRNA_H-paniculata_contig13459.2153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: D8LSE8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE8_ECTSI) HSP 1 Score: 643 bits (1658), Expect = 5.580e-210 Identity = 432/763 (56.62%), Postives = 502/763 (65.79%), Query Frame = 1
Query: 1 QVMMNARLRRLLEEALGLTEERERHREGGAEHHGLTLDELDVCERAVLARIQGMGFPADDVLRAMAACPGEKTSEEDNLATKTTPIPAPTFTSSTVVSRRADTLLEWLCLHLAEHELPDGFDPRGKMLDVIRPGKKKPEATTXXXXXXXXXXXXILGVSSDPGAEAAAAAEYDTVIGALELRLLEYGFGYAEMENAVNKGAKRDVEEQERYSNTPAALMLRPLGVLAAGLAAE------VDFAELGVRGGXXXXXXXXXEAQEAVDEEVLSLEAIYGDDVVVSPHMPKGSHLLTFDLRTLASMPTETWLDVWILRAGAGQGGYPGEAAPIALVREGGRNVTTAAAAAAGLTHLRAAQVALARRAASLVGNTAVYDLLVWAIEELPGILSSQSDGPIAAAAGESAGAISSLVISSVS--SP---VAVTAKTTVSGRGVAGGLSGGSTMPLIRLAGASEPLFAPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRRSIDGLPPGDRKRARERVEASREFAVKRKQREQLPAAAARAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGP----DEFRALVTQPRRIAAVGVAQRVADERCERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSGVRGVGKDGKTPIMHIPGRTFPVRDLYLEDALSMTGHRPRLKRR 2244
+VMM+ARLR++LEEALGLTEERER R+GGAEHHGLTLD L+ +RA L ++QGMGFPADDVLRA+ ACPGE+ + +RAD LLEWLCLHL E ELP GFDPRG+ LDVIRPG+ D G AA A GA D E+E S++ A +LRPL +LA GL G E +EAVDEEV+SLEAIY V V+P+MP+G++LL+FDL LAS+PT+ WLDVW+ +AG G GGYP EA P+ALVR G ++ AAGL H AAQVALARRA SL+GN AVYD+L+WA++ELP +L+ + G AA A + +SV SP VA GG G RL G +EPL++ + XXXXXX XXXXXXXXXXX XXXXXXXXX LPPG+RKR RE+VEASREF +R+QR LPAA A+AEFL++AR SQVVLVSGETGCGKTTQIPQFLLEEWE+G GP D+ R LVTQPRRIAAVGVAQRVADERCER+GAGVGY+IRGESK GP+TRLLFCTTGLLLRRMQGDP L+ELTHL+VDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYF G+ G+ GKTP++HIPGRTFPVRDLYLEDA++ TGHRPRLKR+
Sbjct: 256 KVMMSARLRKILEEALGLTEERERQRDGGAEHHGLTLDGLEGTDRAALEKVQGMGFPADDVLRAVDACPGEE---------------------GETLGQRADALLEWLCLHLEEAELPKGFDPRGRNLDVIRPGQ-------------------------DFGVAAAIA------------------------------GASTD--EEENGSDSLDAGLLRPLKILAGGLVPASARKQXXXXXXXXXAAGLDAELMTEEEGREAVDEEVMSLEAIYDGAVAVAPNMPEGAYLLSFDLTNLASLPTKAWLDVWVPQAG-GVGGYPSEAPPVALVR--GPDLL-----AAGLLH--AAQVALARRAKSLIGNPAVYDILMWALDELPAMLALPATGR---AARRKEAAXXXXISASVGYGSPGVSVAXXXXXXXXXSAKGGGEGGVDRSVRPRLPG-TEPLWSGGASSLGGXXXXXXRGGGXXXXXXXXXXXQXXXXXXXXX--------------XXXLPPGERKRGREKVEASREFESRRRQRAALPAAKAKAEFLSLARRSQVVLVSGETGCGKTTQIPQFLLEEWEEGGGPGGGPDDLRVLVTQPRRIAAVGVAQRVADERCERLGAGVGYKIRGESKAGPDTRLLFCTTGLLLRRMQGDPRLEELTHLVVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFGGLPGL-PGGKTPVLHIPGRTFPVRDLYLEDAIAATGHRPRLKRK 911
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: A0A7S1NDV8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NDV8_9EUGL) HSP 1 Score: 234 bits (596), Expect = 3.230e-68 Identity = 121/204 (59.31%), Postives = 153/204 (75.00%), Query Frame = 1
Query: 1621 RAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGPDEFRALVTQPRRIAAVGVAQRVADERCERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSGVRGVGKDGKTPIMHIPGRTFPVRDLYLEDALSMTGHRPR 2232
R EFL + R+ QVVLVSGETGCGKTTQIPQFLLEE E + +V QPRRIAAVGVA RVA+ERCE VG G GY +RG+++ GP TRLLFCTTG++LR++QG+P L ++H+I+DEVHER++D+DFL+ALL +L + LKV+LMSAT+DT R A YF +G G P++HIPG T+PV + YLE L TG+ PR
Sbjct: 4 REEFLGLVRKHQVVLVSGETGCGKTTQIPQFLLEEAERAGTSRACKVVVAQPRRIAAVGVAGRVAEERCEGVGQGCGYHVRGDARYGPGTRLLFCTTGIVLRQLQGNPGLKGVSHIIIDEVHERNMDSDFLMALLRRLLQQGSHLKVVLMSATMDTTRLAQYFR--KGGGP--APPVIHIPGFTYPVTEHYLEHILRCTGYCPR 203
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: A0A2V3IHA0_9FLOR (Putative ATP-dependent RNA helicase DHX57 n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHA0_9FLOR) HSP 1 Score: 230 bits (587), Expect = 9.720e-60 Identity = 129/253 (50.99%), Postives = 168/253 (66.40%), Query Frame = 1
Query: 1504 RSIDGLPPGDRKRARERVEASR--------------EFAVKRKQREQLPAAAARAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGPDEFRALVTQPRRIAAVGVAQRVADERCERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSGVRGVGKDGK--TPIMHIPGRTFPVRDLYLEDALSM 2214
R+ LP G+ + R+ + R E +K+R LPA AR+E L+ +QVV+VSG TG GKTTQIPQFLLEE + P + TQPRRIAA+ VA+RVA ERC+ VG VGYQ++ S++ +TRL+FCTTG+LLRR+Q DPHL+ ++H+I+DEVHER + DFL+ +L ILPKR L+VILMSATLD A+FAAYFS K PI+ IPGRT+PV +LYLEDA+S+
Sbjct: 552 RASQALPEGNDRTGRKEIARKRIHRPVQSDPLKHSPELLEMKKRRAGLPAHKARSEILSKVMNNQVVVVSGATGSGKTTQIPQFLLEEASENRRPVSI--ICTQPRRIAAMSVAERVASERCQSVGESVGYQVKLNSRLSRQTRLVFCTTGVLLRRLQSDPHLESVSHVILDEVHERSSETDFLMLILRDILPKRRSLRVILMSATLDAAKFAAYFSSTPSSSSSWKIRVPIVAIPGRTYPVDELYLEDAVSL 802
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: A0A1R3HE89_9ROSI (Helicase ATP-binding domain-containing protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HE89_9ROSI) HSP 1 Score: 218 bits (554), Expect = 1.280e-59 Identity = 116/227 (51.10%), Postives = 157/227 (69.16%), Query Frame = 1
Query: 1537 KRARERVEASREFAVKRKQREQLPAAAARAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGPDEFRALVTQPRRIAAVGVAQRVADERCERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSGVRGVGKDGKTPIMHIPGRTFPVRDLYLEDALSMT 2217
K+ +E +AS V + RE+LPA +A+FL E+QV++VSGETGCGKTTQ+PQF+LEE + + + TQPRRI+A+ VA R++ ER E +G VGYQIR ESK +TRLLFCTTG+LLR++ DP+L ++HL+VDE+HER L+ DFLL +L +LP+RP L++ILMSAT++ F+ YF G P +HIPG TFPV +L+LED L T
Sbjct: 181 KQKQENAKASNSVKVMQSFREKLPAFKVKADFLKAVTENQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNIMCTQPRRISAISVAARISSERGESLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVQDPYLKGVSHLLVDEIHERGLNEDFLLIILRDLLPRRPDLRLILMSATINAELFSKYF---------GNAPTIHIPGLTFPVAELFLEDVLQKT 398
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: A0A7R9ILV7_9NEOP (Hypothetical protein n=1 Tax=Timema tahoe TaxID=61484 RepID=A0A7R9ILV7_9NEOP) HSP 1 Score: 229 bits (585), Expect = 1.830e-59 Identity = 125/238 (52.52%), Postives = 161/238 (67.65%), Query Frame = 1
Query: 1546 RERVEASREFAVKRK---------QREQLPAAAARAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGPDEFR---ALVTQPRRIAAVGVAQRVADERCERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSGVRGVGKDGKTPIMHIPGRTFPVRDLYLEDALSMTGH 2223
RE V +R+F K+ +R +LPA E + ++QVV++SGETGCGK+TQ+PQFLL++W P R + TQPRR++A+GVA+RVADER ERVG VGYQIR ESK+ TRL FCTTG+LLRR++GDPHL ++H+IVDEVHER ++DFLL +L +LP RP LKVILMSATL+ F+ YF+ K P +HI GRTFPV L+LED L TG+
Sbjct: 451 REDVSLARKFREKKNLPRYNNFCDKRRELPAWGKMQEIVRTVADNQVVVISGETGCGKSTQVPQFLLDDWLLSYNPQNRRHVEIVCTQPRRLSAIGVAERVADERAERVGQSVGYQIRLESKISSMTRLTFCTTGILLRRLEGDPHLSMVSHIIVDEVHERSEESDFLLLILKDLLPVRPDLKVILMSATLNADLFSEYFN---------KVPTLHIEGRTFPVTQLFLEDILESTGY 679
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: A0A7S3C1X0_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C1X0_9VIRI) HSP 1 Score: 217 bits (553), Expect = 2.450e-59 Identity = 119/210 (56.67%), Postives = 145/210 (69.05%), Query Frame = 1
Query: 1594 REQLPAAAARAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGPDEFRALVTQPRRIAAVGVAQRVADERCERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSGVRGVGKDGKTPIMHIPGRTFPVRDLYLEDALSMTGH 2223
R++LPA AR LA +QVV+VSGETGCGKTTQ+PQFLLE+ E + TQPRRIAA+ VAQRVA+ER ER+G VGYQ+R ES+ +TRLLFCTTG+LLR+M GD L +T +IVDE+HER + DFLL +L +LP+RP L+V+LMSATL+ F+ YF G P MHIPG TFPV YLED L TGH
Sbjct: 194 RQKLPAFGARERLLAAVASNQVVVVSGETGCGKTTQLPQFLLEDAIARGRGAEASIVCTQPRRIAAISVAQRVAEERGERLGESVGYQVRLESERSEDTRLLFCTTGVLLRKMAGDRDLRSVTTVIVDEIHERGMYEDFLLVVLRDLLPRRPDLRVVLMSATLNAESFSEYFGGC---------PTMHIPGYTFPVDVRYLEDVLEATGH 394
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: A0A7S1TQC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQC7_9STRA) HSP 1 Score: 223 bits (568), Expect = 3.630e-59 Identity = 121/235 (51.49%), Postives = 161/235 (68.51%), Query Frame = 1
Query: 1594 REQLPAAAARAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGPDE--------FRALVTQPRRIAAVGVAQRVADERC---ERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSG-------VRGVGKDGKTPIMHIPGRTFPVRDLYLEDALSMTGHRPRLKRR 2244
R +LP+ ++ EFL R++QVV++SGETGCGKTTQIPQF+LEE ++ D + + TQPRR+AA GVAQRV++ER + VGY+IRG+S G TRLLFCTTG+LLRR+Q D L +TH+IVDEVHER LD DFLL LL +LPKRP+LKVILMSAT+D + A+YF V G +D P + IPG T+PV ++YL+D +S ++PRL+++
Sbjct: 372 RARLPSCQSKEEFLRTLRKNQVVIISGETGCGKTTQIPQFILEEADEEAALDPNGQGGKAAVKVICTQPRRLAATGVAQRVSEERSGDNPSRDSEVGYKIRGDSAAGQNTRLLFCTTGILLRRLQDDAQLRTVTHVIVDEVHERTLDGDFLLVLLKELLPKRPELKVILMSATIDADKIASYFGSWPTEDRTVLGSARDKPCPCLFIPGYTYPVSEMYLDDLMSSIYYQPRLRKK 606
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: A0A7R9E8G3_9NEOP (Hypothetical protein n=4 Tax=Timema TaxID=61471 RepID=A0A7R9E8G3_9NEOP) HSP 1 Score: 228 bits (582), Expect = 4.540e-59 Identity = 119/213 (55.87%), Postives = 150/213 (70.42%), Query Frame = 1
Query: 1594 REQLPAAAARAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGPDEFR---ALVTQPRRIAAVGVAQRVADERCERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSGVRGVGKDGKTPIMHIPGRTFPVRDLYLEDALSMTGH 2223
R +LPA E + +QVV++SGETGCGK+TQ+PQFLL++W P R + TQPRR++A+GVA+RVADER ERVG VGYQIR ESK+ TRL FCTTG+LLRR++GDPHL ++H+IVDEVHER ++DFLL +L +LP RP LKVILMSATL+ F+ YF+ K P +HI GRTFPV L+LED L TG+
Sbjct: 750 RRELPAWGKMQEIVRTVANNQVVVISGETGCGKSTQVPQFLLDDWLLSYNPQNRRHVEIVCTQPRRLSAIGVAERVADERAERVGQSVGYQIRLESKISSMTRLTFCTTGILLRRLEGDPHLSMVSHIIVDEVHERSEESDFLLLILKDLLPVRPDLKVILMSATLNADLFSEYFN---------KVPTLHIEGRTFPVTQLFLEDILESTGY 953
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: UPI001D08AC20 (putative ATP-dependent RNA helicase DHX57 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D08AC20) HSP 1 Score: 228 bits (581), Expect = 4.560e-59 Identity = 114/210 (54.29%), Postives = 151/210 (71.90%), Query Frame = 1
Query: 1594 REQLPAAAARAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGPDEFRALVTQPRRIAAVGVAQRVADERCERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSGVRGVGKDGKTPIMHIPGRTFPVRDLYLEDALSMTGH 2223
R+ LPA R + L + ++ QV+L+SGETGCGK+TQIPQ++L+ W + TQPRR++A+GVA+RVA ER ER+G +GYQIR E+KV TRL+FCTTG+LL R+Q DP+L+ +TH+IVDEVHER ++DFLL +L ILPKRP LK+ILMSATL+ F+ YF G+ PI+ IPGRTFPV+ +LED L TG+
Sbjct: 419 RKSLPAWNKRDDILNIIKKHQVILISGETGCGKSTQIPQYILDNWLSNDDGKHVEVICTQPRRLSAIGVAERVASERVERIGGTIGYQIRLETKVSDSTRLIFCTTGILLMRLQSDPYLNSITHVIVDEVHERSDESDFLLLILRRILPKRPDLKIILMSATLNAKLFSDYFGGI---------PIIEIPGRTFPVQQYFLEDVLEETGY 619
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Match: A0A2V3ISQ8_9FLOR (Putative ATP-dependent RNA helicase DHX57 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISQ8_9FLOR) HSP 1 Score: 227 bits (579), Expect = 5.510e-59 Identity = 128/253 (50.59%), Postives = 167/253 (66.01%), Query Frame = 1
Query: 1504 RSIDGLPPGDRKRARERVEASR--------------EFAVKRKQREQLPAAAARAEFLAMARESQVVLVSGETGCGKTTQIPQFLLEEWEDGVGPDEFRALVTQPRRIAAVGVAQRVADERCERVGAGVGYQIRGESKVGPETRLLFCTTGLLLRRMQGDPHLDELTHLIVDEVHERHLDADFLLALLIGILPKRPKLKVILMSATLDTARFAAYFSGVRGVGKDGK--TPIMHIPGRTFPVRDLYLEDALSM 2214
R+ LP G+ + R+ + R E +K+R LPA AR+E L+ +QVV+VSG TG GKTTQIPQFLLEE + P + TQPRRIAA+ VA+RVA ERC+ VG VGYQ++ S++ +TRL+FCTTG+LLRR+Q DPHL+ ++H+I+DEV+ER + DFL+ +L ILPKR L+VILMSATLD A+FAAYFS K PI IPGRT+PV +LYLEDA+S+
Sbjct: 270 RASQALPEGNDRTGRKEIARKRIHRPVQSDPLKHSPELLEMKKRRAGLPAHKARSEILSKVMNNQVVVVSGATGSGKTTQIPQFLLEEASENRRPVSI--ICTQPRRIAAMSVAERVASERCQSVGESVGYQVKLNSRLSRQTRLVFCTTGVLLRRLQSDPHLENVSHVILDEVYERSSETDFLMLILRDILPKRRSLRVILMSATLDAAKFAAYFSSTPSSSSSWKIRVPIAAIPGRTYPVDELYLEDAVSL 520 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13459.2153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13459.2153.1 >prot_H-paniculata_contig13459.2153.1 ID=prot_H-paniculata_contig13459.2153.1|Name=mRNA_H-paniculata_contig13459.2153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=759bp MMNARLRRLLEEALGLTEERERHREGGAEHHGLTLDELDVCERAVLARIQback to top mRNA from alignment at H-paniculata_contig13459:389..6907- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13459.2153.1 ID=mRNA_H-paniculata_contig13459.2153.1|Name=mRNA_H-paniculata_contig13459.2153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6519bp|location=Sequence derived from alignment at H-paniculata_contig13459:389..6907- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13459:389..6907- >mRNA_H-paniculata_contig13459.2153.1 ID=mRNA_H-paniculata_contig13459.2153.1|Name=mRNA_H-paniculata_contig13459.2153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4554bp|location=Sequence derived from alignment at H-paniculata_contig13459:389..6907- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |