mRNA_H-paniculata_contig13454.2152.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13454.2152.1
Unique NamemRNA_H-paniculata_contig13454.2152.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: D8LFE8_ECTSI (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE8_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 6.830e-128
Identity = 188/232 (81.03%), Postives = 205/232 (88.36%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLEGAEGHDFESAGLGTNRFATVVLYFNDVKEGGETVFTKAPGINYHDLEADYMVPVREVLSELELPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYGMSSVDSETGRTVGIRSKGATVENDPTFKV 696
            +RSSTGT GK+ISKTRTSDNAFVTHT+TAQALKRRIFQLLGIEEY E+WADGLQVLRYNESQAY+AH+DYLE AEGHDF+S GLGTNRFATVVLYFNDV+EGGETVFT APGI++H L  D  VPVREVL  L+LP  GWEEKLLLQCRR+MVV PKRG AVLFYNQHPDGRKD++ EHGACPVIDGQKWAANLWVWNGPRYG+SSVD ETGRTV     G  +  DPTF+V
Sbjct:  246 KRSSTGTKGKAISKTRTSDNAFVTHTNTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLESAEGHDFKSEGLGTNRFATVVLYFNDVREGGETVFTHAPGIDHH-LVPDTKVPVREVLENLDLPRSGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIDGQKWAANLWVWNGPRYGLSSVDPETGRTVD--KAGNNIVPDPTFQV 474
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BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: A0A835YK64_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK64_9STRA)

HSP 1 Score: 244 bits (624), Expect = 1.900e-74
Identity = 127/223 (56.95%), Postives = 159/223 (71.30%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLEGAEG--HDFESAGLGTNRFATVVLYFNDVKEGGETVFTKAPGINYHDLEADYMVPVRE------VLSELELPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYGMSSVDSETGRTV 645
            +RSSTGT  KSI++TRTS+NAF+T + TA  LK+RIF LLG++ YV++WADGLQVLRYN S+ YI HYDYL+ + G  H F+S  LGTNRFATVVLY NDV+ GGETVFT     +  +++ D  +          VL+   +  G WEE+L   CR  + V PK+G A+LFYNQ PDG++D A  HGACPV+ GQKWAANLWVWNGPRYG + +D   GRTV
Sbjct:  223 KRSSTGTKEKSIAQTRTSENAFITASETAIGLKKRIFALLGMK-YVDTWADGLQVLRYNVSKGYIDHYDYLDESSGQDHSFDSGHLGTNRFATVVLYLNDVEAGGETVFTLGDIPDGPEIDVDEAIEQLRNSEEAAVLAAAGVEKGSWEERLTALCRTRLAVKPKQGSAILFYNQVPDGKRDRASRHGACPVLAGQKWAANLWVWNGPRYGYTELDDH-GRTV 443
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BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: W7TKQ8_9STRA (Prolyl 4-hydroxylase, alpha subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKQ8_9STRA)

HSP 1 Score: 217 bits (553), Expect = 8.590e-64
Identity = 118/217 (54.38%), Postives = 144/217 (66.36%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLE--GAEGHDFESAGLG-TNRFATVVLYFNDVKEGGETVFTKAPGINYHDLEADYMVPVREVLSEL-------ELPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYGMSSV 621
            +RS+TGT G  +S  RTS+NAF T +  A  LKRR+F LLG+  YVE+WADGLQVLRYN S+AYI H DYLE      H+F+SA  G TNRFATV+LY  DV+EGGETVF          LE + M   +EV +E        +L  G WEE++   C   + V P++G AVLFY+QHPDGR D    HGACPV+ G KWAANLWVWNGPR+G S+ 
Sbjct:  281 KRSTTGTQGAVVSSQRTSENAFDTTSPVAMKLKRRVFDLLGMRPYVETWADGLQVLRYNASKAYIPHMDYLEFDSNADHNFDSASPGGTNRFATVLLYLTDVEEGGETVFPLG-----EPLEKE-MRTTQEVQAEARARGRAADLKPGSWEEEMTETCISRLAVKPRKGRAVLFYSQHPDGRPDERSLHGACPVVKGVKWAANLWVWNGPRFGHSAT 491
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BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: A0A6U4DEC0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DEC0_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.870e-61
Identity = 104/214 (48.60%), Postives = 138/214 (64.49%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLEGAEGHDF--ESAGLGTNRFATVVLYFNDVKEGGETVFTKAPGINYHDLEADYMVPVREVLSELELPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYGMSSVDSETG 636
            +RS+TG+    +S TRTS+ AF TH+  A  LKRR F LLG++ Y E  ADGLQ+LRYN S AY +HYD++E     +F  +    G+NRFATV+LY +DV++GGETVF KAPG    +  +  +  +RE           W+EKL+ +C   + + PK G A+LFYNQ PDG +D    HGACPV+ GQKWAANLWVWN  RYG +   ++ G
Sbjct:   33 KRSTTGSKSVEVSSTRTSETAFDTHSKVALKLKRRCFDLLGMQPYEEKMADGLQLLRYNVSAAYNSHYDFIESTTDANFNWQPREGGSNRFATVLLYLSDVEQGGETVFPKAPGYGSAEEVSTEISRLREGPYAGYFRKNSWQEKLVGECNSKLSIKPKAGEAILFYNQLPDGSRDENSIHGACPVLKGQKWAANLWVWNDIRYGYARKTADKG 246
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BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: A0A6U4DH60_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DH60_9STRA)

HSP 1 Score: 201 bits (511), Expect = 7.180e-61
Identity = 103/216 (47.69%), Postives = 139/216 (64.35%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLEGAEGHDF--ESAGLGTNRFATVVLYFNDVKEGGETVFTKAPGINYHDLEADYMVPVREVLSELELPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYGMSSVDSETGRT 642
            +RS+TG+    +S TRTS+ AF TH+  A  LKRR F LLG++ Y E  ADGLQ+LRYN S AY +HYD++E     +F  +    G+NRFATV+LY +DV++GGETVF KAPG    +  +  +  +RE           W+EKL+ +C   + + PK G A+LFYNQ PDG +D    HGACPV+ GQKWAANLWVWN  RYG +   ++  ++
Sbjct:   33 KRSTTGSKSVEVSSTRTSETAFDTHSKVALKLKRRCFDLLGMQPYEEKMADGLQLLRYNVSAAYNSHYDFIESTTDANFNWQPREGGSNRFATVLLYLSDVEQGGETVFPKAPGYGSAEEVSTEISRLREGPYAGYFRKNSWQEKLVGECNSKLSIKPKAGEAILFYNQLPDGSRDENSIHGACPVLKGQKWAANLWVWNDIRYGYARKTADKAKS 248
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BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: A0A7S2V4E4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4E4_9STRA)

HSP 1 Score: 205 bits (521), Expect = 3.210e-60
Identity = 101/216 (46.76%), Postives = 139/216 (64.35%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLEGAEG--HDFESAGLGTNRFATVVLYFNDVKEGGETVFTKAPGINYHDLEADYMVPVREVLSELE-------LPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYGMSSV 621
            +RSS G TG +++  RTS+N F   +  A ALKRR F+LLG EEY ESW DGLQVLRYN S AY  H D     E   H+++SAG G+NR+AT++LY  DV+EGGETVF KAP  +        M+P+ + + ++             W+E+++ +C+  + V PK+G A+LFY+Q+PDG  D    HG CPV+ G KWAAN+W+WNGPR G + +
Sbjct:  185 KRSSVGATGYTVNSERTSENGFDNFSPVAMALKRRSFELLGFEEYKESWVDGLQVLRYNLSTAYNPHMDPFPVGEDQYHNYDSAGKGSNRYATILLYMTDVEEGGETVFPKAPAAD------GSMMPLAQAVDDVRERKLVEMFERRSWQERMVAECQHRLAVKPKKGDAILFYSQNPDGTVDENSLHGGCPVLSGTKWAANIWIWNGPRVGYTKL 394
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BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: K0SHI1_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHI1_THAOC)

HSP 1 Score: 203 bits (517), Expect = 5.250e-58
Identity = 111/239 (46.44%), Postives = 146/239 (61.09%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLEG---AEGHDFESAGLGTNRFATVVLYFND--VKEGGETVFTKAPGINYHDLEADYMVPVREVLSELE--------LPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYGMSSVDSETGRTVGIRSKGATVEN 678
            +RSSTG +G +++  RTS+N F TH   +QA+KRR   +LG +EY ES  DGLQVLRYN++ AYI H D+++     + H+F+SAGLG+NRFAT++LY +D  V +GGETVFT   G      E D+ V   E +  L         L    WEEK++  CR  + V P    AVLFY+Q+PDG  D + +HG CPVI+G+KWAANLWVWN PR G              RS+G   EN
Sbjct:  331 KRSSTGASGYNVNSQRTSENGFDTHGKVSQAVKRRCMNVLGFDEYEESLTDGLQVLRYNKTTAYIPHLDWIDDYGKKQEHNFDSAGLGSNRFATILLYMSDLGVGDGGETVFTS--GWPVGQAEEDH-VQTNEAIDALRESGDVENILTRDSWEEKMVANCRSRLAVRPHSSRAVLFYSQNPDGTPDRSSKHGGCPVINGEKWAANLWVWNAPRGGFPGSPKNQHVVEKNRSQGKVAEN 566
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BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: A0A7S4RCI9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RCI9_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.520e-57
Identity = 107/227 (47.14%), Postives = 143/227 (63.00%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLEG---AEGHDFESAGLGTNRFATVVLYFNDVKE--GGETVFTKAPGINYHDLEADYMVPVREVLSELE-------LPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYGM--SSVDSETGR 639
            +RSSTG +G +++  RTS+N F TH   AQ +KRR   +LG + Y ES  DGLQVLRYN++ AYI H D+++     E H+F+SAG+G+NRFAT++LY +D+ E  GGETVF +   +       +  V + E L  L        L  G W+E ++ QCR  + V P    AVLFY+QHPDG  D + +HG CPV+ G+KWAANLWVWNGPR G   S V+ E  R
Sbjct:  298 KRSSTGASGYNVNSQRTSENGFDTHGKEAQKVKRRCLDVLGFDHYEESMTDGLQVLRYNKTTAYIPHMDWIDDHYKREEHNFDSAGVGSNRFATILLYMSDLDENDGGETVFKEGWPVGQ---PVEERVQIDEALRTLRESGDADMLEQGSWQETMVAQCRSRLAVRPNSARAVLFYSQHPDGSPDESSKHGGCPVLHGEKWAANLWVWNGPRNGFPGSPVNEEVVR 521
[Close]
BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: B8BSA1_THAPS (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSA1_THAPS)

HSP 1 Score: 201 bits (511), Expect = 6.630e-57
Identity = 104/218 (47.71%), Postives = 143/218 (65.60%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLEG---AEGHDFESAGLGTNRFATVVLYFNDVKEG--GETVFTKA--PGINYHDLEADYMVPVREVLSELE--------LPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYG 609
            +RSSTG +G +++  RTS+N F TH   AQA+K R  ++LG +EY+ES+ DGLQVLRYN++ AYI H D+++     E H+++SAG+G+NRFAT++LY +D+ EG  GETVF K   PG +  +      V +++ L+ L         L  G WEEK++  CR  + V P    A LFY+Q+PDG  D    HG CPVI+G+KWAANLWVWN PR G
Sbjct:  371 KRSSTGASGYNVNSQRTSENGFDTHGKEAQAVKHRCMEILGFDEYIESFTDGLQVLRYNKTTAYIPHLDWIDDYHKKEEHNYDSAGIGSNRFATILLYMSDLGEGDGGETVFVKGWPPGQSEEE-----RVQLKDALASLRESGDVTGLLKEGSWEEKMVANCRSRLAVRPHSSRAALFYSQNPDGSPDEDSLHGGCPVINGEKWAANLWVWNAPRGG 583
[Close]
BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Match: A0A4D9CQP1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQP1_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.570e-55
Identity = 107/211 (50.71%), Postives = 132/211 (62.56%), Query Frame = 1 
Query:    1 QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWADGLQVLRYNESQAYIAHYDYLE--GAEGHDFESAGLG-TNRFATVVLYFNDVKEGGETVFTKAPGINYHDLEA-DYMVPVREVLSELELPVGGWEEKLLLQCRRNMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGPRYGMSSV 621
            +RS+TGT G  +S  RTS+NAF T +  A  LKRR+F LLG+      W DGLQVLRYN S+AYI H DYLE      H+F+SA  G TNRFATV+LY  DV+EGGETVF     +        +     R      +L  G WEE++   C   + V P++G AVLFY+Q+PDG  D    HGACPV+ G KWAANLWVWNGPR+G S+ 
Sbjct:  143 KRSTTGTQGAVVSSHRTSENAFDTTSPVAMKLKRRVFDLLGMR-----W-DGLQVLRYNASKAYIPHMDYLEFDSNADHNFDSASPGGTNRFATVLLYLTDVEEGGETVFPLGEPLEKETRTTQEIQAEARARGRAADLTPGSWEEEMTETCISRLAVKPQKGRAVLFYSQNPDGTPDERSLHGACPVVKGVKWAANLWVWNGPRFGHSAT 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13454.2152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE8_ECTSI6.830e-12881.03Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A835YK64_9STRA1.900e-7456.95Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
W7TKQ8_9STRA8.590e-6454.38Prolyl 4-hydroxylase, alpha subunit n=1 Tax=Nannoc... [more]
A0A6U4DEC0_9STRA1.870e-6148.60Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4DH60_9STRA7.180e-6147.69Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]
A0A7S2V4E4_9STRA3.210e-6046.76Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
K0SHI1_THAOC5.250e-5846.44Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S4RCI9_9STRA1.520e-5747.14Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
B8BSA1_THAPS6.630e-5747.71Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A4D9CQP1_9STRA1.570e-5550.71Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13454contigH-paniculata_contig13454:1855..6623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue6.5e-104
Seed eggNOG ortholog2880.D8LFE8
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categoryother localisation
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Ec32 ortholog descriptionProlyl 4-hydroxylase, alpha subunit
Ec32 orthologEc-07_006010.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Exons5
Model size714
Cds size714
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13454.2152.1prot_H-paniculata_contig13454.2152.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13454 1855..6623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929066.4461205-CDS-H-paniculata_contig13454:1854..20431622929066.4461205-CDS-H-paniculata_contig13454:1854..2043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 1855..2043 -
1691480718.4722533-CDS-H-paniculata_contig13454:1854..20431691480718.4722533-CDS-H-paniculata_contig13454:1854..2043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 1855..2043 -
1622929066.4811404-CDS-H-paniculata_contig13454:2825..29661622929066.4811404-CDS-H-paniculata_contig13454:2825..2966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 2826..2966 -
1691480718.4841125-CDS-H-paniculata_contig13454:2825..29661691480718.4841125-CDS-H-paniculata_contig13454:2825..2966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 2826..2966 -
1622929066.4963648-CDS-H-paniculata_contig13454:3764..38751622929066.4963648-CDS-H-paniculata_contig13454:3764..3875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 3765..3875 -
1691480718.4936783-CDS-H-paniculata_contig13454:3764..38751691480718.4936783-CDS-H-paniculata_contig13454:3764..3875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 3765..3875 -
1622929066.5629096-CDS-H-paniculata_contig13454:5426..55371622929066.5629096-CDS-H-paniculata_contig13454:5426..5537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 5427..5537 -
1691480718.5031002-CDS-H-paniculata_contig13454:5426..55371691480718.5031002-CDS-H-paniculata_contig13454:5426..5537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 5427..5537 -
1622929066.579747-CDS-H-paniculata_contig13454:6461..66231622929066.579747-CDS-H-paniculata_contig13454:6461..6623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 6462..6623 -
1691480718.512233-CDS-H-paniculata_contig13454:6461..66231691480718.512233-CDS-H-paniculata_contig13454:6461..6623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13454 6462..6623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13454.2152.1

>prot_H-paniculata_contig13454.2152.1 ID=prot_H-paniculata_contig13454.2152.1|Name=mRNA_H-paniculata_contig13454.2152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
QRSSTGTTGKSISKTRTSDNAFVTHTSTAQALKRRIFQLLGIEEYVESWA
DGLQVLRYNESQAYIAHYDYLEGAEGHDFESAGLGTNRFATVVLYFNDVK
EGGETVFTKAPGINYHDLEADYMVPVREVLSELELPVGGWEEKLLLQCRR
NMVVPPKRGHAVLFYNQHPDGRKDMAVEHGACPVIDGQKWAANLWVWNGP
RYGMSSVDSETGRTVGIRSKGATVENDPTFKVITQLL*
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mRNA from alignment at H-paniculata_contig13454:1855..6623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13454.2152.1 ID=mRNA_H-paniculata_contig13454.2152.1|Name=mRNA_H-paniculata_contig13454.2152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4769bp|location=Sequence derived from alignment at H-paniculata_contig13454:1855..6623- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGATCGTCGACGGGCACGACAGGGAAATCCATTAGCAAGACCCGCAC
CAGCGATAACGCCTTCGTGACCCACACAAGCACCGCGCAAGCACTTAAGC
GGCGGATCTTCCAGCTACTGGGGATCGAAGAGTACGTGGAGAGCTGGGCC
GATGGCCTCCAGGTGCGCAGCATGGATGACGATGGTGTCGCCTACGACGT
CGTCATCTGGATGAAAAAAAATAGTGGAAATTATCGAAATTAGTGGCAGC
TTTTGTTTCTTGAAACCGGAAAAATTGCAGCACATACATTACTCTTCGTA
CAGCTGTTGGTACTAAATCCCACAATCTGACTACAAACGCGCTGCTTACA
CACACAGGATGATGGAGCTCAATAGTGGTACGAAATTAGCTCCTTGATGC
ACGCTAGCTTTTACAAGGTTAGGCGGACCGTTTTTTCCCCATCTTCTGAT
CACCGGTTATTTCCCATGCGTATTTTACGGTCCGGTCCGGTCCGGTCCGG
TCCGCTTCGTAATTTTGTCTACTCTATCCCCCAGCGCAGTACCTCGTTTT
CCCAAGGGTGCGTGGTCAATGTTAACAAATCTGCAATGTGCAAAGCATGA
GCACCCCTCCCCCCCCCCCTGTGCAATACTCGATTTTGGATCTTCACGGC
AAAAGTAGTCCTGTATATTAATTAAGTGAACAAAGTGTTCCAACCCATGG
ATAGGAGCCACATGCTCCCAAAGTAGCGCGAGAGGCATTATCTCATGTAT
ATTCCGTGCAAATATTTTGATGCGGTCCGTTCTGGTCCGGTTTGTCTCGT
CTTGAACGATCTACGACAAGGGTGATTTAATGTGCCTTTCGCGTATTTAT
CAACTATTTGGTAAACGAGAGATGGACTGTGTCCAACCATTTTTATATAT
ATATATATATATATTTATAAATGTATTGTTACCTATCAATGACGTTTATT
TAATCTCTTGTCTTTTTGGTATTTTCCTGTCGTGTTGATCTTGCCGTGTG
GCGTTTCCCGTTCAACCTGTCTCTTTTCGGTGTGGTCCATGTGATCCATG
ACTTGTGTATATTTGTGTGTGTGTGTGTGCATGCAGGTCCTTCGCTACAA
TGAAAGCCAGGCATACATAGCCCACTACGACTATCTCGAGGGCGCAGAGG
GACACGATTTCGAATCTGCTGGCCTGGGGACCAACAGATTTGCCACGGTA
AGCAATCGAAGCCATTGCCCAGATTCTTGCCACCCTATAATGCTACTTCA
ATTTGGCCAACATGATCACATATGAAGTCATTTTCCACAAACCCGATTTC
AATCTAACATGGAAGTCACCTCGCGATAGTGTAAGCCAAGAACCGACGCA
GTGCTCTCCCAGCTTTGGACAGGAGGTTCCGATAGGGAAAGATGGCTGAT
CCTCACCTGTATTCAACCCATGTGAAACGGGGAAACATTAAAACCGTAGA
GTGCGGCCTTCGAAACGAGGCTAGGGGGTCTAACCTTGGTCATCATACAG
AGGGTAGCTCACAAAACCAATGCACACGTTTGGCATCATGTTGTCGCGTC
GCCAGACGCCCTGCGCACTGGAGAGACTCCTCCCCCCACTGTTTGAATGA
AAAGTGGGACAGGAAACGAAACGAGCGCCAAGAAATTAGGCGTCCCGTAG
GGGCGACTTGAACGCTAGTCATGCAGCAGCGCCTAGATGGTGTTGGAGGC
TATCCAGCACTTGCTCGAGGAGAAATCGCTGAAATTGAGATGGTTTTTCC
CAACAATTGCACTGGACTATAGTCCAAGTCATTTCGAAGGCTATATGACC
ATTATAAATGTTCGATCCAAGAAAGTGGGGGGGTCGATATCCATGCAGAT
GTGAACGCCTCCTTATGCAGATTTTGGCTGTGCAGGTGGTGAGAAATCCT
GGGAAATATGTAAAAAAAACGTGTACACTCACATAACTGTCTGTACAATT
CGGACTAATTTTTTGTTTGTACCGGTGTACAGGTCCTGAGCGAACGCAGG
CGCTCTCGATAAATGGCTTTACTTTGCTTGTATGTCAACGCTTTTGTCAT
ATTCCAGACACTTTAAGTCCGAGGCGATGGGCAATAGTTATATAGATTCA
GCTGCTCAGTGGTTAGATTGATCGCTGTGAGCGAATTATACGTGAACCAG
CGCCTGCATAATTTTGGATGAGCAACTACTTTGGAGTGTAGAGTGTAGAA
ATGGTCTTATCGGAAAAATGGATGGTGTTGTTTTCTTGCAAGACTCGCGT
TACATCTCTTTTTCATTATCGACATCACTGCGGTTTTGCAACACATGTGT
CCGCGATGTTTTTTTTTTTTGTTTTTTTTTTTACCCTGGTGGATCTATTT
ATTGCCTGCCTCAGACTTGCGTTGGTTCATGTTTTGATACAGGGTTGCCT
GCAGTTGCTGCTCGTCTGGTATACTGTCAGTTGGATATTCATAATGGATT
ACTACTACACCCAGTCAATCTCTACGTGTTCAACCCTATCACAGTGAGTT
ACTTAAATTTTGTTGTATATATATATATGTTCCGGAATCAAGGTGAGATT
TTTGTAATATGGTGTATCGAAGCGACGTTGTGGCTGCGCATGATGGCGTT
GTATCCCTCGGCGTCGTGTTTCTTTCGCGATAGGTGCGTCAAGAACTTCT
ATAATTGAAATGACCCCAGCAAAAGCGGCATATGACAACTGCTGCTTGCG
CACCATTTTTGTATCTTGTCTACCTATGTTGGCCTTGATTGATGTCAGGT
GGTTCTGTACTTCAACGATGTGAAAGAGGGTGGGGAGACTGTCTTCACCA
AGGCGCCCGGTATCAACTACCACGATCTAGAAGCGGACTACATGGTCCCC
GTCCGCGAAGTGAGTTTCCCAAAAAATGCGGTACAGTCAGTCAGAGTGTG
TGCACAAGGAAAACGCGAAATGACGACGTGTCTTGTTTAGGGAGCAGGCC
GCTCTCGTAGGACGCGTTTTTTTTTTTCTTCTCCATCACATTAGATAGTA
TTTTAAATTATCCAATCCAGTTGGTCATATAGTGTTCGATTCCCACTGCA
ACGTTCTTGTGGCATACATCAAGCGAGCAGCATCGGTATGTATATACATA
GCCAATGAAGCACGATTGTAGTACCTTACGATATGGTAGATCAATACTGT
CTTGAACGAGTCAAGTTTTGACACATTTTTTTCAACAGTCATGCGGATCA
AATTTCAAGCCAAGCCCTCCCCTCTCCTAAATAACTTGAAACATGATCGT
CGCCCCAATCGGCAGACTGGAGTGTTTGTTTGTGTGTGGATATGAATATA
CTCGTCATGGTTGAATCATCGAATTTGTTTGTCATGTTCCAGAATGGTGA
CTGTTGCCCGTCGTGATCAAATCAACGCGGCATGAGTACGTGCCATACGT
GGTACGGCTCATGATGATGGTGATGATGGTGGTGGTGGTGGTGGGGTATT
GGTCAACCTTTTATTGCTCCGTTTTTATCGTTCACAGCATTTTGTGTGTT
TTTTTAGCAAAACGGAAAGTCACTCTGCTTCTAAAAAAATGATGTTTTTA
TTACGTTGATTTTTATTTCACGTTTGGAGTGTGGACATGCGAGTGTGATA
GTTGAGTAATCAAAGTGTGCGCCGTGGTGTCATTATCCAACGGCACGAAC
CACGCAGGTGCTGAGCGAGCTAGAGCTGCCCGTGGGAGGATGGGAGGAGA
AGTTGCTGCTGCAGTGCCGCAGGAATATGGTCGTGCCGCCCAAGAGAGGG
CATGCAGTATTGTTCTACAACCAGCATCCAGATGGCCGAAAGGATATGGT
GAGCACCAGACGTGCGAAACTGTCGGAAGCACGCCGTACCTACAGCAGGC
TGATATGATCGTTGAATTATCGTGTTGTTTCCGAGAGGATTTAGAGGTAT
GCGTCCATCCGTGACGATGGTTCTTTTTTTTGCTTGTGTGGGGGCTTAGT
AGCTGTGGGCCAAGCTGGTGAATTTTTGTCGCCCGTTGCCGAAACACGAC
CTTGGTACTGAACTGACGGGATAATGGTACTGTCTTAGAGGGGCAACAAC
ACAAAACGTGTACAGTATTAATAACTCACTTTAGGAACCGGACTTCGTAA
CAGCAAAAAATTAACTTCGCTAACGACCAGTCATGAACGATGAAACCGTC
GACAGAATGCCTTGACCAGCTCTAGATAGCTGTTGAGTTTATCTGAGTGC
AAAGGAGGGTCTGTTTTTCGCCGTTTTGGGGGCTTTGATCTTTGGATCCA
TTGTAGAGGGAGAGCTGATAAACATCGTCTTTTTTTGGAACGGATAAGTT
TTGAATAAGCACTCCACAGCTGATTAGGAGGTCGAAAGTTCCCAAGGGTT
AATAGCTTCTCCTTGTAGTGACTCTTTTTTTTCACTAAGGGCGTATCGTA
CACGACAGTTGTCCTGTCCTCTCGACACATTTTAGTTGTGTTTATGTGTG
TCATCACCCATAGTACATGTGTCATTATTCACAGTACATCACTATGTCAA
TAAATGTTTTACTCTTTATTGATCTAATTCCCCCCCCTCCCCTCTCCCTC
GGGCATGTACGAACTTCTTGCTCTTGTCAGGCTGTCGAGCACGGCGCATG
CCCTGTAATCGACGGCCAGAAGTGGGCTGCCAACTTGTGGGTGTGGAACG
GTCCTCGGTACGGCATGTCTAGCGTTGACTCGGAGACAGGCAGAACCGTG
GGCATTCGTTCCAAGGGAGCAACCGTTGAAAACGACCCAACCTTCAAGGT
AATCACGCAACTGCTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig13454:1855..6623-

>mRNA_H-paniculata_contig13454.2152.1 ID=mRNA_H-paniculata_contig13454.2152.1|Name=mRNA_H-paniculata_contig13454.2152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig13454:1855..6623- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGATCGTCGACGGGCACGACAGGGAAATCCATTAGCAAGACCCGCAC
CAGCGATAACGCCTTCGTGACCCACACAAGCACCGCGCAAGCACTTAAGC
GGCGGATCTTCCAGCTACTGGGGATCGAAGAGTACGTGGAGAGCTGGGCC
GATGGCCTCCAGCAGCGATCGTCGACGGGCACGACAGGGAAATCCATTAG
CAAGACCCGCACCAGCGATAACGCCTTCGTGACCCACACAAGCACCGCGC
AAGCACTTAAGCGGCGGATCTTCCAGCTACTGGGGATCGAAGAGTACGTG
GAGAGCTGGGCCGATGGCCTCCAGGTCCTTCGCTACAATGAAAGCCAGGC
ATACATAGCCCACTACGACTATCTCGAGGGCGCAGAGGGACACGATTTCG
AATCTGCTGGCCTGGGGACCAACAGATTTGCCACGGTCCTTCGCTACAAT
GAAAGCCAGGCATACATAGCCCACTACGACTATCTCGAGGGCGCAGAGGG
ACACGATTTCGAATCTGCTGGCCTGGGGACCAACAGATTTGCCACGGTGG
TTCTGTACTTCAACGATGTGAAAGAGGGTGGGGAGACTGTCTTCACCAAG
GCGCCCGGTATCAACTACCACGATCTAGAAGCGGACTACATGGTCCCCGT
CCGCGAAGTGGTTCTGTACTTCAACGATGTGAAAGAGGGTGGGGAGACTG
TCTTCACCAAGGCGCCCGGTATCAACTACCACGATCTAGAAGCGGACTAC
ATGGTCCCCGTCCGCGAAGTGCTGAGCGAGCTAGAGCTGCCCGTGGGAGG
ATGGGAGGAGAAGTTGCTGCTGCAGTGCCGCAGGAATATGGTCGTGCCGC
CCAAGAGAGGGCATGCAGTATTGTTCTACAACCAGCATCCAGATGGCCGA
AAGGATATGGTGCTGAGCGAGCTAGAGCTGCCCGTGGGAGGATGGGAGGA
GAAGTTGCTGCTGCAGTGCCGCAGGAATATGGTCGTGCCGCCCAAGAGAG
GGCATGCAGTATTGTTCTACAACCAGCATCCAGATGGCCGAAAGGATATG
GCTGTCGAGCACGGCGCATGCCCTGTAATCGACGGCCAGAAGTGGGCTGC
CAACTTGTGGGTGTGGAACGGTCCTCGGTACGGCATGTCTAGCGTTGACT
CGGAGACAGGCAGAACCGTGGGCATTCGTTCCAAGGGAGCAACCGTTGAA
AACGACCCAACCTTCAAGGTAATCACGCAACTGCTATAAGCTGTCGAGCA
CGGCGCATGCCCTGTAATCGACGGCCAGAAGTGGGCTGCCAACTTGTGGG
TGTGGAACGGTCCTCGGTACGGCATGTCTAGCGTTGACTCGGAGACAGGC
AGAACCGTGGGCATTCGTTCCAAGGGAGCAACCGTTGAAAACGACCCAAC
CTTCAAGGTAATCACGCAACTGCTATAA
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